MD15G1345500.v1.1

Small nuclear RNA activating complex (SNAPc), subunit SNAP43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0002506
Physical Location & Seq
Reverse (-)
40497275 .. 40498279
1005 bp
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UTR
Exon/CDS
Intron
MD15G1345500.v1.1.491

Sequence Viewer

Length: 261 bp
ATGGATCTCACTTCGTTCAAGCCGGACATTGACGAGCTGATAGATGAATTTACTAAGGCAAAGCTTCCTTTTTCATTTCACCTTTTCCTTTCTGTTGTTGCTGAATCGACGAGTTTGGCTGATATGAAGATGATATGGCTTTCTCAATATTTTTCTTACATTTACGAGGTGCGGCCTTCTACCAACTTGGCCTTCTACCAACTTGGCCTTCTTCATGCAGTCATTAGTGGGTGGACTTTGTTGCCTTTTGTGTCTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNAPc_SNAP43

Protein Analysis

87

Amino Acids

9.9

Weight (kDa)

4.78

Isoelectric Point (pI)

27.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC1 PF09808 6 - 75 2.4e-07 Small nuclear RNA activating complex (SNAPc), subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 172
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 47
AgsI TTSAA 1 cut(s) 19
AjuI GAANNNNNNNTTGG 4 cut(s) 176, 192, 208, 224
AluBI AGCT 2 cut(s) 37, 64
AluI AGCT 2 cut(s) 37, 64
AlwI GGATC 1 cut(s) 12
AoxI GGCC 3 cut(s) 173, 189, 205
ApoI RAATTY 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 71
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
BshFI GGCC 3 cut(s) 175, 191, 207
BsiSI CCGG 1 cut(s) 23
BsnI GGCC 3 cut(s) 175, 191, 207
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 1 cut(s) 172
BspANI GGCC 3 cut(s) 175, 191, 207
BspPI GGATC 1 cut(s) 12
BssMI GATC 1 cut(s) 4
BstDEI CTNAG 1 cut(s) 54
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 3 cut(s) 175, 191, 207
CviAII CATG 1 cut(s) 215
CviJI RGCY 8 cut(s) 22, 37, 64, 119, 139, 175, 191, 207
CviKI_1 RGCY 8 cut(s) 22, 37, 64, 119, 139, 175, 191, 207
DdeI CTNAG 1 cut(s) 54
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
FaeI CATG 1 cut(s) 218
FaiI YATR 4 cut(s) 125, 136, 216, 259
FatI CATG 1 cut(s) 214
Fnu4HI GCNGC 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 173
GluI GCNGC 1 cut(s) 173
HaeIII GGCC 3 cut(s) 175, 191, 207
HapII CCGG 1 cut(s) 23
Hin1II CATG 1 cut(s) 218
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 1 cut(s) 104
HpaII CCGG 1 cut(s) 23
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 234
Hpy8I GTNNAC 1 cut(s) 234
Hpy99I CGWCG 1 cut(s) 112
HpyAV CCTTC 3 cut(s) 186, 202, 218
HpyCH4V TGCA 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 54
Hsp92II CATG 1 cut(s) 218
Kzo9I GATC 1 cut(s) 4
LpnPI CCDG 1 cut(s) 36
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 2 cut(s) 139, 203
MflI RGATCY 1 cut(s) 4
MluCI AATT 1 cut(s) 47
MnlI CCTC 1 cut(s) 160
MspI CCGG 1 cut(s) 23
NdeII GATC 1 cut(s) 4
NlaIII CATG 1 cut(s) 218
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 1 cut(s) 174
PsuI RGATCY 1 cut(s) 4
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 1 cut(s) 4
SetI ASST 4 cut(s) 39, 66, 84, 171
SgeI CNNG 8 cut(s) 31, 35, 46, 123, 178, 199, 215, 227
Sse9I AATT 1 cut(s) 47
SsiI CCGC 1 cut(s) 172
SspI AATATT 1 cut(s) 149
TaqI TCGA 1 cut(s) 107
TasI AATT 1 cut(s) 47
TauI GCSGC 1 cut(s) 175
TfiI GAWTC 1 cut(s) 104
TspDTI ATGAA 4 cut(s) 60, 63, 140, 203
XapI RAATTY 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.