RLG00000024840

Small nuclear RNA activating complex (SNAPc), subunit SNAP43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0002506
Physical Location & Seq
Reverse (-)
39589692 .. 39590540
849 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024840

Sequence Viewer

Length: 849 bp
ATGGATCTCGCTCCGATGAAGCGCGACATCGACGACCTGATATCCCAATTCACCGCCGCCGATTCGACTCGCTTCACCGATATGAAGCAAGTCTGGCTCTCCAACAAGTTCTCCTACATCTACGACGCGCGTCCCACTTGCACCAATTCCCTCGCCCTCTTCATGCAATCCCTCTATTCCCACTCAATCGGACACCTAATCTCTCCCGATTCCTCCCTGTCACGACGGCTCGGCGGCCTCTACTGCCTCTACTGTCTCTACGAGACCCAGCCCTTCAAGCCCCCTTTCAAGGTCTACCTATCCCTCGAGGAGCTCAAGAAGCTCCGGAAGATCGTGGCCGACGCCAAGGTCCGGGGCGTGAGTGCGGCGAGTGTCGTGGTGAAGCGGATGCTGGAGAAGAATGCGTTTCTGTTCGGGTGTGTGGAGACGAACGAGGGTTTGAAAGGGAAGGTGGATGAGTTGACGGAGCTGGAGAACGCGAGGATTAAAGCGGCGTGTAATAAATTGTTTGATGATACCAAGATTGAGGAGTTTATTCACATGGATTTGGGGATGGAGGTTGATTTGAGGAAGGTGAAGCAGATGTGTAGGGATTATGAGGAGTTGAAGAGGGTTGCGGCGGTGGAAGGCGGTGATGAAGAGATGAAGGGGGTTTCCGAAGGTAAGGAGTTGGTTGGGGATGCAATGGAGAAGATTGCCAAGGAGTGGGATGCTCAGAGGGAAGTGTTTTATCGGCAGACGGGATTGAGTCAGAAACTGAATGAAGATGAGCAGCAGCAGCAGCAAGAAGAGGAGGGAGATGATGATAGTTTCGACAAGGAACTCGAACAAATGCTCTTTAAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNAPc_SNAP43

Protein Analysis

283

Amino Acids

32.33

Weight (kDa)

4.97

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC1 PF09808 6 - 203 1.9e-52 Small nuclear RNA activating complex (SNAPc), subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 347
AbsI CCTCGAGG 1 cut(s) 305
AccB7I CCANNNNNTGG 1 cut(s) 705
AccI GTMKAC 1 cut(s) 294
AccII CGCG 4 cut(s) 24, 128, 130, 479
AccIII TCCGGA 1 cut(s) 324
AciI CCGC 9 cut(s) 54, 57, 234, 365, 385, 491, 617, 620, 630
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 336
AcyI GRCGYC 1 cut(s) 342
AfiI CCNNNNNNNGG 3 cut(s) 289, 351, 705
AgsI TTSAA 4 cut(s) 277, 289, 442, 607
AluBI AGCT 3 cut(s) 313, 322, 469
AluI AGCT 3 cut(s) 313, 322, 469
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 3 cut(s) 257, 260, 419
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 757
Ama87I CYCGRG 1 cut(s) 305
Aor13HI TCCGGA 1 cut(s) 324
AoxI GGCC 2 cut(s) 235, 336
ApeKI GCWGC 4 cut(s) 772, 775, 778, 781
AspLEI GCGC 2 cut(s) 24, 130
AspS9I GGNCC 1 cut(s) 349
AsuC2I CCSGG 1 cut(s) 353
AsuHPI GGTGA 5 cut(s) 43, 67, 391, 586, 644
AvaI CYCGRG 1 cut(s) 305
AvaII GGWCC 1 cut(s) 349
BanII GRGCYC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 4 cut(s) 784, 787, 790, 793
BccI CCATC 1 cut(s) 547
BceAI ACGGC 1 cut(s) 242
BcnI CCSGG 1 cut(s) 353
BcoDI GTCTC 3 cut(s) 257, 260, 419
BisI GCNGC 9 cut(s) 57, 235, 366, 492, 618, 773, 776, 779, 782
BlsI GCNGC 9 cut(s) 58, 236, 367, 493, 619, 774, 777, 780, 783
Bme1390I CCNGG 1 cut(s) 353
Bme18I GGWCC 1 cut(s) 349
BmeT110I CYCGRG 1 cut(s) 305
BmgT120I GGNCC 1 cut(s) 349
BmrFI CCNGG 1 cut(s) 353
BmsI GCATC 3 cut(s) 378, 670, 700
BoxI GACNNNNGTC 1 cut(s) 129
BpmI CTGGAG 2 cut(s) 413, 491
BpuEI CTTGAG 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 353
BsaHI GRCGYC 1 cut(s) 342
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 3 cut(s) 345, 352, 699
BsaWI WCCGGW 1 cut(s) 324
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 3 cut(s) 289, 351, 705
Bse3DI GCAATG 1 cut(s) 690
BseAI TCCGGA 1 cut(s) 324
BseDI CCNNGG 3 cut(s) 345, 352, 699
BseGI GGATG 5 cut(s) 393, 460, 558, 685, 715
BseLI CCNNNNNNNGG 3 cut(s) 289, 351, 705
BseMI GCAATG 1 cut(s) 690
BseMII CTCAG 1 cut(s) 728
BseRI GAGGAG 4 cut(s) 323, 542, 614, 806
BseXI GCAGC 4 cut(s) 784, 787, 790, 793
BseYI CCCAGC 1 cut(s) 267
Bsh1236I CGCG 4 cut(s) 24, 128, 130, 479
BshFI GGCC 2 cut(s) 237, 338
BsiHKAI GWGCWC 1 cut(s) 315
BsiHKCI CYCGRG 1 cut(s) 305
BsiSI CCGG 2 cut(s) 325, 352
BslFI GGGAC 1 cut(s) 117
BslI CCNNNNNNNGG 3 cut(s) 289, 351, 705
BsmAI GTCTC 3 cut(s) 257, 260, 419
BsmBI CGTCTC 1 cut(s) 419
BsmFI GGGAC 1 cut(s) 117
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 2 cut(s) 237, 338
Bso31I GGTCTC 1 cut(s) 257
BsoBI CYCGRG 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 315
Bsp13I TCCGGA 1 cut(s) 324
Bsp143I GATC 2 cut(s) 4, 330
BspACI CCGC 9 cut(s) 54, 57, 234, 365, 385, 491, 617, 620, 630
BspANI GGCC 2 cut(s) 237, 338
BspCNI CTCAG 1 cut(s) 727
BspEI TCCGGA 1 cut(s) 324
BspFNI CGCG 4 cut(s) 24, 128, 130, 479
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 690
BssECI CCNNGG 3 cut(s) 345, 352, 699
BssMI GATC 2 cut(s) 4, 330
BssNI GRCGYC 1 cut(s) 342
BssT1I CCWWGG 2 cut(s) 345, 699
Bst4CI ACNGT 1 cut(s) 254
Bst6I CTCTTC 4 cut(s) 164, 602, 633, 783
BstACI GRCGYC 1 cut(s) 342
BstDEI CTNAG 1 cut(s) 714
BstF5I GGATG 5 cut(s) 393, 460, 558, 685, 715
BstFNI CGCG 4 cut(s) 24, 128, 130, 479
BstHHI GCGC 2 cut(s) 24, 130
BstKTI GATC 2 cut(s) 7, 333
BstMAI GTCTC 3 cut(s) 257, 260, 419
BstMBI GATC 2 cut(s) 4, 330
BstMWI GCNNNNNNNGC 6 cut(s) 94, 243, 277, 319, 778, 781
BstPAI GACNNNNGTC 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 351
BstUI CGCG 4 cut(s) 24, 128, 130, 479
BstV1I GCAGC 4 cut(s) 784, 787, 790, 793
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 237, 338
BtsCI GGATG 5 cut(s) 393, 460, 558, 685, 715
CaiI CAGNNNCTG 1 cut(s) 757
CfoI GCGC 2 cut(s) 24, 130
Cfr13I GGNCC 1 cut(s) 349
CseI GACGC 3 cut(s) 119, 134, 350
CviAII CATG 3 cut(s) 163, 541, 846
CviJI RGCY 9 cut(s) 97, 229, 237, 271, 280, 313, 322, 338, 469
CviKI_1 RGCY 9 cut(s) 97, 229, 237, 271, 280, 313, 322, 338, 469
DdeI CTNAG 1 cut(s) 714
DpnI GATC 2 cut(s) 6, 332
DpnII GATC 2 cut(s) 4, 330
DraI TTTAAA 1 cut(s) 841
DrdI GACNNNNNNGTC 1 cut(s) 347
DseDI GACNNNNNNGTC 1 cut(s) 347
EaeI YGGCCR 1 cut(s) 336
Eam1104I CTCTTC 4 cut(s) 164, 602, 633, 783
EarI CTCTTC 4 cut(s) 164, 602, 633, 783
Ecl136II GAGCTC 1 cut(s) 313
Eco130I CCWWGG 2 cut(s) 345, 699
Eco24I GRGCYC 1 cut(s) 315
Eco31I GGTCTC 1 cut(s) 257
Eco32I GATATC 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 349
Eco53kI GAGCTC 1 cut(s) 313
Eco88I CYCGRG 1 cut(s) 305
EcoICRI GAGCTC 1 cut(s) 313
EcoRV GATATC 1 cut(s) 42
EcoT14I CCWWGG 2 cut(s) 345, 699
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 2 cut(s) 345, 699
Esp3I CGTCTC 1 cut(s) 419
FaeI CATG 3 cut(s) 166, 544, 849
FaiI YATR 5 cut(s) 83, 164, 542, 597, 847
FaqI GGGAC 1 cut(s) 117
FatI CATG 3 cut(s) 162, 540, 845
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 9 cut(s) 57, 235, 366, 492, 618, 773, 776, 779, 782
FokI GGATG 5 cut(s) 400, 467, 565, 692, 722
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 9 cut(s) 57, 235, 366, 492, 618, 773, 776, 779, 782
GlaI GCGC 2 cut(s) 23, 129
GluI GCNGC 9 cut(s) 57, 235, 366, 492, 618, 773, 776, 779, 782
GsaI CCCAGC 1 cut(s) 271
GsuI CTGGAG 2 cut(s) 413, 491
HaeIII GGCC 2 cut(s) 237, 338
HapII CCGG 2 cut(s) 325, 352
HgaI GACGC 3 cut(s) 119, 134, 350
HhaI GCGC 2 cut(s) 24, 130
Hin1I GRCGYC 1 cut(s) 342
Hin1II CATG 3 cut(s) 166, 544, 849
Hin6I GCGC 2 cut(s) 22, 128
HinP1I GCGC 2 cut(s) 22, 128
HincII GTYRAC 1 cut(s) 462
HindII GTYRAC 1 cut(s) 462
HinfI GANTC 4 cut(s) 62, 67, 209, 748
HpaII CCGG 2 cut(s) 325, 352
HphI GGTGA 5 cut(s) 43, 67, 391, 586, 644
Hpy166II GTNNAC 2 cut(s) 295, 462
Hpy188I TCNGA 5 cut(s) 15, 191, 658, 717, 753
Hpy188III TCNNGA 4 cut(s) 206, 222, 316, 325
Hpy8I GTNNAC 2 cut(s) 295, 462
Hpy99I CGWCG 4 cut(s) 35, 128, 228, 344
HpyAV CCTTC 6 cut(s) 283, 442, 565, 620, 640, 653
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4V TGCA 3 cut(s) 141, 166, 683
HpyF10VI GCNNNNNNNGC 6 cut(s) 94, 243, 277, 319, 778, 781
HpyF3I CTNAG 1 cut(s) 714
Hsp92I GRCGYC 1 cut(s) 342
Hsp92II CATG 3 cut(s) 166, 544, 849
HspAI GCGC 2 cut(s) 22, 128
Kpn2I TCCGGA 1 cut(s) 324
Kzo9I GATC 2 cut(s) 4, 330
LmnI GCTCC 4 cut(s) 16, 310, 327, 466
LpnPI CCDG 8 cut(s) 50, 79, 230, 281, 338, 365, 377, 455
Lsp1109I GCAGC 4 cut(s) 784, 787, 790, 793
LweI GCATC 3 cut(s) 378, 670, 700
MaeIII GTNAC 1 cut(s) 219
MalI GATC 2 cut(s) 6, 332
MboI GATC 2 cut(s) 4, 330
MboII GAAGA 8 cut(s) 151, 340, 409, 619, 650, 703, 776, 800
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 3 cut(s) 47, 145, 503
MlyI GAGTC 2 cut(s) 61, 757
MmeI TCCRAC 1 cut(s) 126
MroI TCCGGA 1 cut(s) 324
MseI TTAA 2 cut(s) 486, 840
MslI CAYNNNNRTG 1 cut(s) 80
MspI CCGG 2 cut(s) 325, 352
MspR9I CCNGG 1 cut(s) 353
Mva1269I GAATGC 1 cut(s) 406
MvnI CGCG 4 cut(s) 24, 128, 130, 479
MwoI GCNNNNNNNGC 6 cut(s) 94, 243, 277, 319, 778, 781
NciI CCSGG 1 cut(s) 353
NdeII GATC 2 cut(s) 4, 330
NlaIII CATG 3 cut(s) 166, 544, 849
NmeAIII GCCGAG 1 cut(s) 210
NmuCI GTSAC 1 cut(s) 219
PaeR7I CTCGAG 1 cut(s) 305
PctI GAATGC 1 cut(s) 406
PfeI GAWTC 2 cut(s) 62, 209
PflMI CCANNNNNTGG 1 cut(s) 705
PkrI GCNGC 9 cut(s) 58, 236, 367, 493, 619, 774, 777, 780, 783
PleI GAGTC 2 cut(s) 61, 756
PpsI GAGTC 2 cut(s) 61, 756
PshAI GACNNNNGTC 1 cut(s) 129
Psp124BI GAGCTC 1 cut(s) 315
PspFI CCCAGC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 349
PspXI VCTCGAGB 1 cut(s) 305
PstNI CAGNNNCTG 1 cut(s) 757
PsuI RGATCY 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 80
SacI GAGCTC 1 cut(s) 315
SaqAI TTAA 2 cut(s) 486, 840
SatI GCNGC 9 cut(s) 57, 235, 366, 492, 618, 773, 776, 779, 782
Sau3AI GATC 2 cut(s) 4, 330
Sau96I GGNCC 1 cut(s) 349
SchI GAGTC 2 cut(s) 61, 757
ScrFI CCNGG 1 cut(s) 353
SduI GDGCHC 1 cut(s) 315
SfaNI GCATC 3 cut(s) 378, 670, 700
Sfr274I CTCGAG 1 cut(s) 305
SinI GGWCC 1 cut(s) 349
SlaI CTCGAG 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 80
SmlI CTYRAG 2 cut(s) 305, 314
SmoI CTYRAG 2 cut(s) 305, 314
Sse9I AATT 3 cut(s) 47, 145, 503
SsiI CCGC 9 cut(s) 54, 57, 234, 365, 385, 491, 617, 620, 630
SstI GAGCTC 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 351
StyI CCWWGG 2 cut(s) 345, 699
TaaI ACNGT 1 cut(s) 254
TaqI TCGA 5 cut(s) 30, 65, 306, 813, 825
TasI AATT 3 cut(s) 47, 145, 503
TauI GCSGC 5 cut(s) 59, 237, 368, 494, 620
TfiI GAWTC 2 cut(s) 62, 209
Tru1I TTAA 2 cut(s) 486, 840
Tru9I TTAA 2 cut(s) 486, 840
TseFI GTSAC 1 cut(s) 219
TseI GCWGC 4 cut(s) 772, 775, 778, 781
Tsp45I GTSAC 1 cut(s) 219
TspDTI ATGAA 6 cut(s) 32, 98, 151, 651, 659, 777
TspGWI ACGGA 1 cut(s) 479
Van91I CCANNNNNTGG 1 cut(s) 705
VpaK11BI GGWCC 1 cut(s) 349
XhoI CTCGAG 1 cut(s) 305
XmiI GTMKAC 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.