Rorug02G0353700

Small nuclear RNA activating complex (SNAPc), subunit SNAP43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002506
Physical Location & Seq
Forward (+)
44445947 .. 44447023
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0353700.1

Sequence Viewer

Length: 1077 bp
ATGATGCAAGCAGCTACTTACCTACTTCAGCCAATCGCCGCTTCGGACTGCGGATATCCTATGCAGAACCATCTGGTGCCCAATTTACACCCTATTATTCTTCCAATCCCTGGCATAATCAATCGGGTTTGGCACAAGAATTTGGAGTCTGAGTTTAAGAAAATCCGGAACTTACTCTTTTGGCCCGGTGAGCCCCATACGCATGACCGCTGCTTTCTTGCTTCTATAGACACCGAATTCCCCGGTCAACTTTCTGCATCCGACAAAGGCCGTCTCCGAGAGCCACAATACAATTATGAGATGATGAAGAAAAATGTGAACGCCACCAACATAATCCAATTGGGTTTGACTCTCTCGGACAGATTTGGAAACTTCTACGTATGGGAGTTCAATTTCAGTGACTTTGATATCGAAAGTGATGAGCAAAACAAGGACTCAATTAAGTTTCTCAAGACTCATGGGACCGATTTCCAGAGAAACAAGAAGGACGGTATTCCTTCCTCTAAGTTCGCAGAGTTGTGTCGGGGCTCTGGGCTGGTAGGAAACAGTTCAGAGGTACATTTGACATGGGTAGGTTTCCAGAGTTCTTATGATTTTGGCTTCTTCACCAAGATTCTCAGTGGGCAAAATTTGCCAGACGAAATGCATGGATTCATGAGAAACGTGAAGGAGTACTTTGGGGCTAGCGTGTTTGACATTAAACACATGATCACGAGGTTCTGTTCCGGAGTTTGTGGGGGTTTGGACAAGGTGGCAAACAAGCTCGGGGTTGCTCGGGCAGCCGGGAAGAGTCACATGGCTGGTTCTGACAGTCTTTTGACATTGCAAACCTTTCTCAAGCTTATAAATGAGTGTTTGGAGCCAGCAGATTCTAACAGCAGCAACATTGGGACATTGCAGAAGTTTACAATGAATATGAGTTTTGTGGATTCTTTTGTGAGTTCCCGCGCTCCTTGTGATACCGGTTTGGCATTGCAGGTCTTTAAGATGCTTATAAGACTCGAGGAAGAAAGAGAGAAACAGAACTACTTTAAGTTGTATAGTTGTCAAGGGGCTTTGTATAGTTTAGCAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNAPc_SNAP43

Protein Analysis

358

Amino Acids

40.41

Weight (kDa)

6.79

Isoelectric Point (pI)

36.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAF1 PF04857 71 - 166 4.1e-11 CAF1 family ribonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 845, 995
Acc36I ACCTGC 1 cut(s) 967
AccB1I GGYRCC 1 cut(s) 76
AccB7I CCANNNNNTGG 1 cut(s) 110
AccII CGCG 1 cut(s) 948
AccIII TCCGGA 2 cut(s) 165, 725
AciI CCGC 4 cut(s) 39, 51, 208, 946
AcsI RAATTY 3 cut(s) 139, 236, 628
AcuI CTGAAG 1 cut(s) 11
AfaI GTAC 2 cut(s) 558, 674
AfiI CCNNNNNNNGG 1 cut(s) 110
AgeI ACCGGT 1 cut(s) 962
AgsI TTSAA 1 cut(s) 391
AjnI CCWGG 1 cut(s) 109
AjuI GAANNNNNNNTTGG 2 cut(s) 25, 57
AluBI AGCT 3 cut(s) 14, 763, 841
AluI AGCT 3 cut(s) 14, 763, 841
Alw26I GTCTC 1 cut(s) 278
Ama87I CYCGRG 3 cut(s) 764, 774, 1001
Aor13HI TCCGGA 2 cut(s) 165, 725
AoxI GGCC 2 cut(s) 182, 268
ApeKI GCWGC 4 cut(s) 11, 210, 779, 879
ApoI RAATTY 3 cut(s) 139, 236, 628
AsiGI ACCGGT 1 cut(s) 962
Asp700I GAANNNNTTC 1 cut(s) 547
AspLEI GCGC 1 cut(s) 950
AspS9I GGNCC 2 cut(s) 183, 462
AsuC2I CCSGG 3 cut(s) 186, 243, 784
AsuHPI GGTGA 2 cut(s) 200, 598
AsuNHI GCTAGC 1 cut(s) 683
AvaI CYCGRG 3 cut(s) 764, 774, 1001
AvaII GGWCC 1 cut(s) 462
BaeGI GKGCMC 1 cut(s) 81
BanI GGYRCC 1 cut(s) 76
BanII GRGCYC 2 cut(s) 195, 530
BauI CACGAG 1 cut(s) 712
BbvI GCAGC 4 cut(s) 23, 197, 791, 891
BccI CCATC 1 cut(s) 78
BceAI ACGGC 1 cut(s) 255
BciT130I CCWGG 1 cut(s) 111
BclI TGATCA 1 cut(s) 708
BcnI CCSGG 3 cut(s) 186, 243, 784
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 1 cut(s) 684
BfmI CTRYAG 1 cut(s) 225
BfuAI ACCTGC 1 cut(s) 967
BisI GCNGC 5 cut(s) 12, 39, 211, 780, 880
BlsI GCNGC 5 cut(s) 13, 40, 212, 781, 881
BmcAI AGTACT 1 cut(s) 674
Bme1390I CCNGG 4 cut(s) 111, 186, 243, 784
Bme18I GGWCC 1 cut(s) 462
BmeT110I CYCGRG 3 cut(s) 764, 774, 1001
BmgT120I GGNCC 2 cut(s) 183, 462
BmiI GGNNCC 3 cut(s) 78, 463, 861
BmrFI CCNGG 4 cut(s) 111, 186, 243, 784
BmsI GCATC 2 cut(s) 266, 978
BmtI GCTAGC 1 cut(s) 687
BpuEI CTTGAG 2 cut(s) 434, 821
BpuMI CCSGG 3 cut(s) 186, 243, 784
BsaAI YACGTR 1 cut(s) 379
BsaJI CCNNGG 2 cut(s) 109, 241
BsaWI WCCGGW 3 cut(s) 165, 725, 962
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse118I RCCGGY 1 cut(s) 962
Bse3DI GCAATG 3 cut(s) 821, 893, 971
BseAI TCCGGA 2 cut(s) 165, 725
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 2 cut(s) 109, 241
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMI GCAATG 3 cut(s) 821, 893, 971
BseMII CTCAG 2 cut(s) 141, 631
BseSI GKGCMC 1 cut(s) 81
BseXI GCAGC 4 cut(s) 23, 197, 791, 891
Bsh1236I CGCG 1 cut(s) 948
BshFI GGCC 2 cut(s) 184, 270
BshNI GGYRCC 1 cut(s) 76
BshTI ACCGGT 1 cut(s) 962
BsiHKCI CYCGRG 3 cut(s) 764, 774, 1001
BsiSI CCGG 6 cut(s) 166, 186, 243, 726, 783, 963
BslFI GGGAC 2 cut(s) 475, 904
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 278
BsmBI CGTCTC 1 cut(s) 278
BsmFI GGGAC 2 cut(s) 475, 904
BsnI GGCC 2 cut(s) 184, 270
BsoBI CYCGRG 3 cut(s) 764, 774, 1001
Bsp1286I GDGCHC 3 cut(s) 81, 195, 530
Bsp13I TCCGGA 2 cut(s) 165, 725
Bsp143I GATC 1 cut(s) 708
BspACI CCGC 4 cut(s) 39, 51, 208, 946
BspANI GGCC 2 cut(s) 184, 270
BspCNI CTCAG 2 cut(s) 142, 630
BspEI TCCGGA 2 cut(s) 165, 725
BspFNI CGCG 1 cut(s) 948
BspHI TCATGA 1 cut(s) 654
BspLI GGNNCC 3 cut(s) 78, 463, 861
BspMI ACCTGC 1 cut(s) 967
BspOI GCTAGC 1 cut(s) 687
BspT107I GGYRCC 1 cut(s) 76
BsrDI GCAATG 3 cut(s) 821, 893, 971
BsrFI RCCGGY 1 cut(s) 962
BssAI RCCGGY 1 cut(s) 962
BssECI CCNNGG 2 cut(s) 109, 241
BssMI GATC 1 cut(s) 708
BssSI CACGAG 1 cut(s) 712
Bst2BI CACGAG 1 cut(s) 712
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 3 cut(s) 491, 548, 812
Bst6I CTCTTC 1 cut(s) 782
BstAPI GCANNNNNTGC 1 cut(s) 631
BstBAI YACGTR 1 cut(s) 379
BstC8I GCNNGC 3 cut(s) 9, 685, 864
BstDEI CTNAG 3 cut(s) 150, 504, 617
BstF5I GGATG 1 cut(s) 257
BstFNI CGCG 1 cut(s) 948
BstHHI GCGC 1 cut(s) 950
BstKTI GATC 1 cut(s) 711
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 1 cut(s) 708
BstMWI GCNNNNNNNGC 4 cut(s) 190, 199, 631, 779
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 4 cut(s) 109, 184, 241, 782
BstSFI CTRYAG 1 cut(s) 225
BstSLI GKGCMC 1 cut(s) 81
BstSNI TACGTA 1 cut(s) 379
BstUI CGCG 1 cut(s) 948
BstV1I GCAGC 4 cut(s) 23, 197, 791, 891
BsuRI GGCC 2 cut(s) 184, 270
BtsCI GGATG 1 cut(s) 257
BtsIMutI CAGTG 2 cut(s) 403, 625
BveI ACCTGC 1 cut(s) 967
Cac8I GCNNGC 3 cut(s) 9, 685, 864
CciI TCATGA 1 cut(s) 654
CfoI GCGC 1 cut(s) 950
Cfr10I RCCGGY 1 cut(s) 962
Cfr13I GGNCC 2 cut(s) 183, 462
Csp6I GTAC 2 cut(s) 557, 673
CspAI ACCGGT 1 cut(s) 962
CviAII CATG 7 cut(s) 203, 458, 567, 647, 655, 706, 796
CviQI GTAC 2 cut(s) 557, 673
DdeI CTNAG 3 cut(s) 150, 504, 617
DpnI GATC 1 cut(s) 710
DpnII GATC 1 cut(s) 708
Eam1104I CTCTTC 1 cut(s) 782
EarI CTCTTC 1 cut(s) 782
Eco105I TACGTA 1 cut(s) 379
Eco24I GRGCYC 2 cut(s) 195, 530
Eco32I GATATC 2 cut(s) 56, 409
Eco47I GGWCC 1 cut(s) 462
Eco57I CTGAAG 1 cut(s) 11
Eco88I CYCGRG 3 cut(s) 764, 774, 1001
EcoRI GAATTC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 109
EcoRV GATATC 2 cut(s) 56, 409
EcoT22I ATGCAT 1 cut(s) 648
EcoT38I GRGCYC 2 cut(s) 195, 530
Esp3I CGTCTC 1 cut(s) 278
FaeI CATG 7 cut(s) 206, 461, 570, 650, 658, 709, 799
FalI AAGNNNNNCTT 2 cut(s) 659, 691
FaqI GGGAC 2 cut(s) 475, 904
FatI CATG 7 cut(s) 202, 457, 566, 646, 654, 705, 795
FauI CCCGC 1 cut(s) 953
FbaI TGATCA 1 cut(s) 708
Fnu4HI GCNGC 5 cut(s) 12, 39, 211, 780, 880
FokI GGATG 1 cut(s) 244
FriOI GRGCYC 2 cut(s) 195, 530
Fsp4HI GCNGC 5 cut(s) 12, 39, 211, 780, 880
FspBI CTAG 1 cut(s) 684
GlaI GCGC 1 cut(s) 949
GluI GCNGC 5 cut(s) 12, 39, 211, 780, 880
HaeIII GGCC 2 cut(s) 184, 270
HapII CCGG 6 cut(s) 166, 186, 243, 726, 783, 963
HhaI GCGC 1 cut(s) 950
Hin1II CATG 7 cut(s) 206, 461, 570, 650, 658, 709, 799
Hin6I GCGC 1 cut(s) 948
HinP1I GCGC 1 cut(s) 948
HincII GTYRAC 1 cut(s) 248
HindII GTYRAC 1 cut(s) 248
HindIII AAGCTT 1 cut(s) 839
HpaII CCGG 6 cut(s) 166, 186, 243, 726, 783, 963
HphI GGTGA 2 cut(s) 200, 598
Hpy166II GTNNAC 3 cut(s) 248, 319, 906
Hpy188I TCNGA 7 cut(s) 46, 151, 262, 278, 358, 553, 808
Hpy188III TCNNGA 7 cut(s) 166, 451, 472, 580, 655, 712, 726
Hpy8I GTNNAC 3 cut(s) 248, 319, 906
HpyAV CCTTC 3 cut(s) 478, 507, 661
HpyCH4III ACNGT 3 cut(s) 491, 548, 812
HpyCH4IV ACGT 2 cut(s) 378, 663
HpyCH4V TGCA 7 cut(s) 7, 64, 257, 646, 826, 898, 976
HpyF10VI GCNNNNNNNGC 4 cut(s) 190, 199, 631, 779
HpyF3I CTNAG 3 cut(s) 150, 504, 617
HpySE526I ACGT 2 cut(s) 378, 663
Hsp92II CATG 7 cut(s) 206, 461, 570, 650, 658, 709, 799
HspAI GCGC 1 cut(s) 948
Kpn2I TCCGGA 2 cut(s) 165, 725
Ksp22I TGATCA 1 cut(s) 708
Kzo9I GATC 1 cut(s) 708
LmnI GCTCC 2 cut(s) 859, 955
Lsp1109I GCAGC 4 cut(s) 23, 197, 791, 891
LweI GCATC 2 cut(s) 266, 978
MaeI CTAG 1 cut(s) 684
MaeII ACGT 2 cut(s) 378, 663
MaeIII GTNAC 2 cut(s) 398, 791
MalI GATC 1 cut(s) 710
MboI GATC 1 cut(s) 708
MboII GAAGA 5 cut(s) 92, 319, 595, 799, 1019
MfeI CAATTG 1 cut(s) 338
MhlI GDGCHC 3 cut(s) 81, 195, 530
MluCI AATT 8 cut(s) 82, 139, 236, 292, 338, 391, 438, 628
MlyI GAGTC 6 cut(s) 155, 343, 428, 448, 799, 993
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 4 cut(s) 511, 547, 708, 997
Mph1103I ATGCAT 1 cut(s) 648
MroI TCCGGA 2 cut(s) 165, 725
MroXI GAANNNNTTC 1 cut(s) 547
MseI TTAA 6 cut(s) 156, 441, 699, 984, 1032, 1075
MslI CAYNNNNRTG 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 210
MspI CCGG 6 cut(s) 166, 186, 243, 726, 783, 963
MspR9I CCNGG 4 cut(s) 111, 186, 243, 784
MunI CAATTG 1 cut(s) 338
MvaI CCWGG 1 cut(s) 111
MvnI CGCG 1 cut(s) 948
MwoI GCNNNNNNNGC 4 cut(s) 190, 199, 631, 779
NciI CCSGG 3 cut(s) 186, 243, 784
NdeII GATC 1 cut(s) 708
NheI GCTAGC 1 cut(s) 683
NlaIII CATG 7 cut(s) 206, 461, 570, 650, 658, 709, 799
NlaIV GGNNCC 3 cut(s) 78, 463, 861
NmuCI GTSAC 2 cut(s) 398, 791
NsiI ATGCAT 1 cut(s) 648
PaeR7I CTCGAG 1 cut(s) 1001
PagI TCATGA 1 cut(s) 654
PdmI GAANNNNTTC 1 cut(s) 547
PfeI GAWTC 4 cut(s) 613, 651, 869, 929
PflMI CCANNNNNTGG 1 cut(s) 110
PinAI ACCGGT 1 cut(s) 962
PkrI GCNGC 5 cut(s) 13, 40, 212, 781, 881
PleI GAGTC 6 cut(s) 154, 343, 428, 448, 798, 993
PpsI GAGTC 6 cut(s) 154, 343, 428, 448, 798, 993
Ppu21I YACGTR 1 cut(s) 379
PsiI TTATAA 2 cut(s) 845, 995
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 3 cut(s) 78, 463, 861
PspPI GGNCC 2 cut(s) 183, 462
PspXI VCTCGAGB 1 cut(s) 1001
RsaI GTAC 2 cut(s) 558, 674
RsaNI GTAC 2 cut(s) 557, 673
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 6 cut(s) 156, 441, 699, 984, 1032, 1075
SatI GCNGC 5 cut(s) 12, 39, 211, 780, 880
Sau3AI GATC 1 cut(s) 708
Sau96I GGNCC 2 cut(s) 183, 462
ScaI AGTACT 1 cut(s) 674
SchI GAGTC 6 cut(s) 155, 343, 428, 448, 799, 993
ScrFI CCNGG 4 cut(s) 111, 186, 243, 784
SduI GDGCHC 3 cut(s) 81, 195, 530
SfaNI GCATC 2 cut(s) 266, 978
SfcI CTRYAG 1 cut(s) 225
Sfr274I CTCGAG 1 cut(s) 1001
SinI GGWCC 1 cut(s) 462
SlaI CTCGAG 1 cut(s) 1001
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 3 cut(s) 449, 836, 1001
SmoI CTYRAG 3 cut(s) 449, 836, 1001
SnaBI TACGTA 1 cut(s) 379
Sse9I AATT 8 cut(s) 82, 139, 236, 292, 338, 391, 438, 628
SsiI CCGC 4 cut(s) 39, 51, 208, 946
SspMI CTAG 1 cut(s) 684
StyD4I CCNGG 4 cut(s) 109, 184, 241, 782
TaaI ACNGT 3 cut(s) 491, 548, 812
TaiI ACGT 2 cut(s) 381, 666
TaqI TCGA 2 cut(s) 411, 1002
TaqII GACCGA 1 cut(s) 479
TasI AATT 8 cut(s) 82, 139, 236, 292, 338, 391, 438, 628
TatI WGTACW 1 cut(s) 672
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 4 cut(s) 613, 651, 869, 929
Tru1I TTAA 6 cut(s) 156, 441, 699, 984, 1032, 1075
Tru9I TTAA 6 cut(s) 156, 441, 699, 984, 1032, 1075
TscAI CASTG 2 cut(s) 403, 625
TseFI GTSAC 2 cut(s) 398, 791
TseI GCWGC 4 cut(s) 11, 210, 779, 879
Tsp45I GTSAC 2 cut(s) 398, 791
TspDTI ATGAA 3 cut(s) 320, 643, 926
TspRI CASTG 2 cut(s) 403, 625
Van91I CCANNNNNTGG 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 462
XapI RAATTY 3 cut(s) 139, 236, 628
XhoI CTCGAG 1 cut(s) 1001
XmnI GAANNNNTTC 1 cut(s) 547
XspI CTAG 1 cut(s) 684
ZrmI AGTACT 1 cut(s) 674
Zsp2I ATGCAT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.