RLG00000019772

Small nuclear RNA activating complex (SNAPc), subunit SNAP43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002506
Physical Location & Seq
Reverse (-)
56492862 .. 56493454
593 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019772

Sequence Viewer

Length: 516 bp
ATGCAATCCCTCTATTCCCACTCAATCAGACACCTAATCGCTCCCGATTCCTCCCTGTCACGAAGACTCGGCGGCCTCTACTGTCTCTACGAGACCCAGCCCTTCAAGCCCCCTTTCAAGGTCTACCTATCCCTCGAGGAGCTCAAGAAGCTCCGGAAGCTCGTGGCCGACGCCAAGGTCCGGGGCGTGAGTGCGGCGAGTGCCGTGGTGAAGCGGATGCTGGAGAAGAATGCGTTTCTGTTCGGGTGTGTGGAGACGAACGAGGGTTTGAAAGGGAAGGTGGATGAGTTGACGGAGCTGGAGAACGCGAGGATTAAAGCGGCGTGTAAGAAGTTGTTTGATGATACCAAGATTGAAGAGTTTATTCACATGGATTTGGGGATGGAGGTTGATTTGAGGAAGGTGAAGCAGATGTGTAGGGATTATGAGGAGTTGAAGAGGGTTGCGGCGGTGGAGGGCGGTGATGAAGAGATGAAGGGCGTTTCGGAAGACCGGATTGAGTCAGAAACTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNAPc_SNAP43

Protein Analysis

172

Amino Acids

19.45

Weight (kDa)

6.03

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC1 PF09808 1 - 146 9.2e-30 Small nuclear RNA activating complex (SNAPc), subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
AbsI CCTCGAGG 1 cut(s) 134
AccI GTMKAC 1 cut(s) 123
AccII CGCG 1 cut(s) 308
AccIII TCCGGA 1 cut(s) 153
AciI CCGC 7 cut(s) 72, 194, 214, 320, 446, 449, 459
AcoI YGGCCR 1 cut(s) 165
AcyI GRCGYC 1 cut(s) 171
AfiI CCNNNNNNNGG 2 cut(s) 118, 180
AgsI TTSAA 5 cut(s) 106, 118, 271, 356, 436
AluBI AGCT 4 cut(s) 142, 151, 160, 298
AluI AGCT 4 cut(s) 142, 151, 160, 298
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 3 cut(s) 86, 89, 248
AlwNI CAGNNNCTG 1 cut(s) 509
Ama87I CYCGRG 1 cut(s) 134
Aor13HI TCCGGA 1 cut(s) 153
AoxI GGCC 2 cut(s) 73, 165
AspS9I GGNCC 1 cut(s) 178
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 3 cut(s) 220, 415, 473
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 1 cut(s) 178
BanII GRGCYC 1 cut(s) 144
BauI CACGAG 1 cut(s) 161
BbsI GAAGAC 2 cut(s) 70, 495
Bbv12I GWGCWC 1 cut(s) 144
BccI CCATC 1 cut(s) 376
BceAI ACGGC 1 cut(s) 188
BcnI CCSGG 1 cut(s) 182
BcoDI GTCTC 3 cut(s) 86, 89, 248
BisI GCNGC 4 cut(s) 73, 195, 321, 447
BlsI GCNGC 4 cut(s) 74, 196, 322, 448
Bme1390I CCNGG 1 cut(s) 182
Bme18I GGWCC 1 cut(s) 178
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 178
BmrFI CCNGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 207
BpiI GAAGAC 2 cut(s) 70, 495
BpmI CTGGAG 2 cut(s) 242, 320
BpuEI CTTGAG 1 cut(s) 128
BpuMI CCSGG 1 cut(s) 182
BsaHI GRCGYC 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 3 cut(s) 174, 181, 204
BsaWI WCCGGW 2 cut(s) 153, 492
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 180
BseAI TCCGGA 1 cut(s) 153
BseDI CCNNGG 3 cut(s) 174, 181, 204
BseGI GGATG 3 cut(s) 222, 289, 387
BseLI CCNNNNNNNGG 2 cut(s) 118, 180
BseRI GAGGAG 2 cut(s) 152, 443
BseYI CCCAGC 1 cut(s) 96
Bsh1236I CGCG 1 cut(s) 308
BshFI GGCC 2 cut(s) 75, 167
BsiHKAI GWGCWC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 3 cut(s) 154, 181, 493
BslI CCNNNNNNNGG 2 cut(s) 118, 180
BsmAI GTCTC 3 cut(s) 86, 89, 248
BsmBI CGTCTC 1 cut(s) 248
BsmI GAATGC 1 cut(s) 235
BsnI GGCC 2 cut(s) 75, 167
Bso31I GGTCTC 1 cut(s) 86
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 144
Bsp13I TCCGGA 1 cut(s) 153
BspACI CCGC 7 cut(s) 72, 194, 214, 320, 446, 449, 459
BspANI GGCC 2 cut(s) 75, 167
BspEI TCCGGA 1 cut(s) 153
BspFNI CGCG 1 cut(s) 308
BspTNI GGTCTC 1 cut(s) 86
BssECI CCNNGG 3 cut(s) 174, 181, 204
BssNI GRCGYC 1 cut(s) 171
BssSI CACGAG 1 cut(s) 161
BssT1I CCWWGG 1 cut(s) 174
Bst2BI CACGAG 1 cut(s) 161
Bst4CI ACNGT 1 cut(s) 83
Bst6I CTCTTC 3 cut(s) 351, 431, 462
BstACI GRCGYC 1 cut(s) 171
BstDSI CCRYGG 1 cut(s) 204
BstF5I GGATG 3 cut(s) 222, 289, 387
BstFNI CGCG 1 cut(s) 308
BstMAI GTCTC 3 cut(s) 86, 89, 248
BstMWI GCNNNNNNNGC 4 cut(s) 106, 148, 157, 200
BstSCI CCNGG 1 cut(s) 180
BstUI CGCG 1 cut(s) 308
BstV2I GAAGAC 2 cut(s) 70, 495
BsuRI GGCC 2 cut(s) 75, 167
BtgI CCRYGG 1 cut(s) 204
BtsCI GGATG 3 cut(s) 222, 289, 387
CaiI CAGNNNCTG 1 cut(s) 509
Cfr13I GGNCC 1 cut(s) 178
CseI GACGC 1 cut(s) 179
CviAII CATG 1 cut(s) 370
CviJI RGCY 8 cut(s) 75, 100, 109, 142, 151, 160, 167, 298
CviKI_1 RGCY 8 cut(s) 75, 100, 109, 142, 151, 160, 167, 298
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 3 cut(s) 351, 431, 462
EarI CTCTTC 3 cut(s) 351, 431, 462
Ecl136II GAGCTC 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 174
Eco24I GRGCYC 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 142
Eco88I CYCGRG 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 248
FaeI CATG 1 cut(s) 373
FaiI YATR 2 cut(s) 371, 426
FatI CATG 1 cut(s) 369
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 4 cut(s) 73, 195, 321, 447
FokI GGATG 3 cut(s) 229, 296, 394
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 4 cut(s) 73, 195, 321, 447
GluI GCNGC 4 cut(s) 73, 195, 321, 447
GsaI CCCAGC 1 cut(s) 100
GsuI CTGGAG 2 cut(s) 242, 320
HaeIII GGCC 2 cut(s) 75, 167
HapII CCGG 3 cut(s) 154, 181, 493
HgaI GACGC 1 cut(s) 179
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 1 cut(s) 373
HincII GTYRAC 1 cut(s) 291
HindII GTYRAC 1 cut(s) 291
HinfI GANTC 3 cut(s) 47, 66, 500
HpaII CCGG 3 cut(s) 154, 181, 493
HphI GGTGA 3 cut(s) 220, 415, 473
Hpy166II GTNNAC 2 cut(s) 124, 291
Hpy188I TCNGA 3 cut(s) 29, 487, 505
Hpy188III TCNNGA 4 cut(s) 44, 60, 145, 154
Hpy8I GTNNAC 2 cut(s) 124, 291
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 4 cut(s) 112, 271, 394, 469
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 4 cut(s) 106, 148, 157, 200
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 1 cut(s) 373
Kpn2I TCCGGA 1 cut(s) 153
LmnI GCTCC 4 cut(s) 46, 139, 156, 295
LpnPI CCDG 7 cut(s) 68, 110, 167, 194, 206, 284, 506
LweI GCATC 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 57
MboII GAAGA 6 cut(s) 75, 238, 368, 448, 479, 500
MhlI GDGCHC 1 cut(s) 144
MlyI GAGTC 2 cut(s) 60, 509
MroI TCCGGA 1 cut(s) 153
MseI TTAA 1 cut(s) 315
MspI CCGG 3 cut(s) 154, 181, 493
MspR9I CCNGG 1 cut(s) 182
Mva1269I GAATGC 1 cut(s) 235
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 4 cut(s) 106, 148, 157, 200
NciI CCSGG 1 cut(s) 182
NlaIII CATG 1 cut(s) 373
NmeAIII GCCGAG 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 57
PaeR7I CTCGAG 1 cut(s) 134
PctI GAATGC 1 cut(s) 235
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 4 cut(s) 74, 196, 322, 448
PleI GAGTC 2 cut(s) 60, 508
PpsI GAGTC 2 cut(s) 60, 508
Psp124BI GAGCTC 1 cut(s) 144
PspFI CCCAGC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 178
PspXI VCTCGAGB 1 cut(s) 134
PstNI CAGNNNCTG 1 cut(s) 509
SacI GAGCTC 1 cut(s) 144
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 4 cut(s) 73, 195, 321, 447
Sau96I GGNCC 1 cut(s) 178
SchI GAGTC 2 cut(s) 60, 509
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 1 cut(s) 144
SfaNI GCATC 1 cut(s) 207
Sfr274I CTCGAG 1 cut(s) 134
SinI GGWCC 1 cut(s) 178
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 2 cut(s) 134, 143
SmoI CTYRAG 2 cut(s) 134, 143
SsiI CCGC 7 cut(s) 72, 194, 214, 320, 446, 449, 459
SstI GAGCTC 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 83
TaqI TCGA 1 cut(s) 135
TauI GCSGC 4 cut(s) 75, 197, 323, 449
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TseFI GTSAC 1 cut(s) 57
Tsp45I GTSAC 1 cut(s) 57
TspDTI ATGAA 2 cut(s) 480, 488
TspGWI ACGGA 1 cut(s) 308
VpaK11BI GGWCC 1 cut(s) 178
XhoI CTCGAG 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.