MD05G1013300.v1.1

Small nuclear RNA activating complex (SNAPc), subunit SNAP43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0002506
Physical Location & Seq
Reverse (-)
2572920 .. 2577596
4677 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1013300.v1.1.491

Sequence Viewer

Length: 852 bp
ATGGATCTCACTCCGTTCAAGCGGGACGTTGACGAGCTGATAGATGAATTTGCTAAGGCTGAATCAACGAGTTTGGCTGATATGAAGAGGATATGGCTTTCCAAAAAGTTTTCTTACATTTACGAGGCGCGGCCTTCTACCAACTTGGCCTTCTTCATGCAGTCATTGTATGCGCATTTGATCGGATACATAGTCGGCACAGCTTCTTTATCACACAGAGTGGGTGGACTCTATTGCCTTTTCTGTCTCTATGAGACTCAACCATGCAAACCTCCATTCAGGATTTATATATCTCTTGAAGAGCTGAAGAAACTTCGAAAGCTTGTTATTGACACAAAGGAAAACCAAATAAAAGTGGTATCTTCCTTGGTAAGAAAAATGCTAGAAAAGAATACTTTCCTGTTTGGGTTCGTGGATACAAACGAAGAGTCTTTTGCAGAGACAGTAAACCAACTGACACAATTACAGGATGCTCGAGTTCAAGTTGCCTACAAGGAGTTATTTGCTAATACTAAGATTGAGGACTTTCTCCACATGGACTTGGGAATGGAAGTTGACCTGAATACACTTAAGCAAATGTCAACAGAGTATGCAGAGGCCAAGAAAATAGCAATTACGGAGGCCAGCAAGGTTGTGGACGTTGGAGATATAAAGCACATTGCAGAAGGTAAGGAACTGGTTGGAGATGTAGCGGAGAAGATGGTTGGGCAATGGGATTCTCAAAGAGAAGTCTTTTATCAACAAACAGGGGTAAACCAGCAACAGCTGCAACTGATGAGTGACAATGACAATGACGACTTTGATAAGGAACTGGAACAACTGCTATCTGGAGCAGATTATACAAGCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNAPc_SNAP43

Protein Analysis

284

Amino Acids

32.42

Weight (kDa)

4.88

Isoelectric Point (pI)

31.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNAPC1 PF09808 6 - 201 1.6e-55 Small nuclear RNA activating complex (SNAPc), subunit 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 174
AccII CGCG 1 cut(s) 130
AciI CCGC 3 cut(s) 22, 130, 692
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 1 cut(s) 47
AcuI CTGAAG 1 cut(s) 326
AdeI CACNNNGTG 1 cut(s) 220
AflII CTTAAG 1 cut(s) 569
AgsI TTSAA 3 cut(s) 19, 299, 482
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 5 cut(s) 37, 203, 304, 322, 766
AluI AGCT 5 cut(s) 37, 203, 304, 322, 766
Alw26I GTCTC 3 cut(s) 248, 251, 434
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 474
AoxI GGCC 4 cut(s) 131, 147, 597, 621
ApeKI GCWGC 1 cut(s) 766
ApoI RAATTY 1 cut(s) 47
ArsI GACNNNNNNTTYG 2 cut(s) 413, 445
Asp700I GAANNNNTTC 1 cut(s) 395
AspLEI GCGC 2 cut(s) 130, 175
AsuII TTCGAA 1 cut(s) 316
AvaI CYCGRG 1 cut(s) 474
BbvI GCAGC 1 cut(s) 753
BccI CCATC 1 cut(s) 694
BciVI GTATCC 2 cut(s) 179, 409
BcoDI GTCTC 3 cut(s) 248, 251, 434
BfaI CTAG 1 cut(s) 383
BfrI CTTAAG 1 cut(s) 569
BfuI GTATCC 2 cut(s) 179, 409
BisI GCNGC 2 cut(s) 131, 767
BlsI GCNGC 2 cut(s) 132, 768
BmeT110I CYCGRG 1 cut(s) 474
BmsI GCATC 1 cut(s) 460
BpmI CTGGAG 1 cut(s) 849
Bpu10I CCTNAGC 1 cut(s) 54
Bpu14I TTCGAA 1 cut(s) 316
BsaJI CCNNGG 1 cut(s) 366
Bse1I ACTGG 2 cut(s) 681, 816
Bse3DI GCAATG 2 cut(s) 657, 716
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 1 cut(s) 475
BseMI GCAATG 2 cut(s) 657, 716
BseNI ACTGG 2 cut(s) 681, 816
BseXI GCAGC 1 cut(s) 753
Bsh1236I CGCG 1 cut(s) 130
BshFI GGCC 4 cut(s) 133, 149, 599, 623
BsiHKCI CYCGRG 1 cut(s) 474
BslFI GGGAC 1 cut(s) 38
BsmAI GTCTC 3 cut(s) 248, 251, 434
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 4 cut(s) 133, 149, 599, 623
BsoBI CYCGRG 1 cut(s) 474
Bsp119I TTCGAA 1 cut(s) 316
Bsp143I GATC 2 cut(s) 4, 180
BspACI CCGC 3 cut(s) 22, 130, 692
BspANI GGCC 4 cut(s) 133, 149, 599, 623
BspFNI CGCG 1 cut(s) 130
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 294
BspT104I TTCGAA 1 cut(s) 316
BspTI CTTAAG 1 cut(s) 569
BsrDI GCAATG 2 cut(s) 657, 716
BsrI ACTGG 2 cut(s) 681, 816
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 2 cut(s) 4, 180
BssT1I CCWWGG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 445
Bst6I CTCTTC 3 cut(s) 80, 294, 420
BstAFI CTTAAG 1 cut(s) 569
BstAPI GCANNNNNTGC 1 cut(s) 766
BstBI TTCGAA 1 cut(s) 316
BstC8I GCNNGC 1 cut(s) 625
BstDEI CTNAG 2 cut(s) 54, 513
BstF5I GGATG 1 cut(s) 475
BstFNI CGCG 1 cut(s) 130
BstHHI GCGC 2 cut(s) 130, 175
BstKTI GATC 2 cut(s) 7, 183
BstMAI GTCTC 3 cut(s) 248, 251, 434
BstMBI GATC 2 cut(s) 4, 180
BstMWI GCNNNNNNNGC 1 cut(s) 766
BstUI CGCG 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 753
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuI GTATCC 2 cut(s) 179, 409
BsuRI GGCC 4 cut(s) 133, 149, 599, 623
BtsCI GGATG 1 cut(s) 475
Cac8I GCNNGC 1 cut(s) 625
CfoI GCGC 2 cut(s) 130, 175
CviAII CATG 3 cut(s) 157, 264, 535
DdeI CTNAG 2 cut(s) 54, 513
DpnI GATC 2 cut(s) 6, 182
DpnII GATC 2 cut(s) 4, 180
DraIII CACNNNGTG 1 cut(s) 220
Eam1104I CTCTTC 3 cut(s) 80, 294, 420
EarI CTCTTC 3 cut(s) 80, 294, 420
Eco130I CCWWGG 1 cut(s) 366
Eco57I CTGAAG 1 cut(s) 326
Eco88I CYCGRG 1 cut(s) 474
EcoT14I CCWWGG 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 3 cut(s) 160, 267, 538
FaqI GGGAC 1 cut(s) 38
FatI CATG 3 cut(s) 156, 263, 534
FauI CCCGC 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 131, 767
FokI GGATG 1 cut(s) 482
Fsp4HI GCNGC 2 cut(s) 131, 767
FspAI RTGCGCAY 1 cut(s) 174
FspBI CTAG 1 cut(s) 383
FspI TGCGCA 1 cut(s) 174
GlaI GCGC 2 cut(s) 129, 174
GluI GCNGC 2 cut(s) 131, 767
GsuI CTGGAG 1 cut(s) 849
HaeIII GGCC 4 cut(s) 133, 149, 599, 623
HhaI GCGC 2 cut(s) 130, 175
Hin1II CATG 3 cut(s) 160, 267, 538
Hin6I GCGC 2 cut(s) 128, 173
HinP1I GCGC 2 cut(s) 128, 173
HincII GTYRAC 3 cut(s) 31, 556, 582
HindII GTYRAC 3 cut(s) 31, 556, 582
HindIII AAGCTT 1 cut(s) 320
HinfI GANTC 5 cut(s) 62, 228, 256, 428, 716
Hpy166II GTNNAC 7 cut(s) 31, 227, 448, 556, 582, 637, 754
Hpy188I TCNGA 1 cut(s) 185
Hpy188III TCNNGA 3 cut(s) 280, 296, 828
Hpy8I GTNNAC 7 cut(s) 31, 227, 448, 556, 582, 637, 754
HpyAV CCTTC 3 cut(s) 144, 160, 659
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4IV ACGT 2 cut(s) 27, 639
HpyCH4V TGCA 6 cut(s) 160, 267, 437, 593, 662, 769
HpyF10VI GCNNNNNNNGC 1 cut(s) 766
HpyF3I CTNAG 2 cut(s) 54, 513
HpySE526I ACGT 2 cut(s) 27, 639
Hsp92II CATG 3 cut(s) 160, 267, 538
HspAI GCGC 2 cut(s) 128, 173
Kzo9I GATC 2 cut(s) 4, 180
LguI GCTCTTC 1 cut(s) 294
LmnI GCTCC 1 cut(s) 830
Lsp1109I GCAGC 1 cut(s) 753
LweI GCATC 1 cut(s) 460
MaeI CTAG 1 cut(s) 383
MaeII ACGT 2 cut(s) 27, 639
MaeIII GTNAC 1 cut(s) 779
MalI GATC 2 cut(s) 6, 182
MboI GATC 2 cut(s) 4, 180
MboII GAAGA 7 cut(s) 97, 145, 311, 319, 354, 437, 709
MflI RGATCY 1 cut(s) 4
MluCI AATT 3 cut(s) 47, 461, 612
MlyI GAGTC 3 cut(s) 222, 250, 437
MmeI TCCRAC 2 cut(s) 622, 661
MnlI CCTC 6 cut(s) 81, 118, 282, 514, 589, 613
MroXI GAANNNNTTC 1 cut(s) 395
MseI TTAA 1 cut(s) 570
MspA1I CMGCKG 1 cut(s) 766
MspCI CTTAAG 1 cut(s) 569
MvnI CGCG 1 cut(s) 130
MwoI GCNNNNNNNGC 1 cut(s) 766
NdeII GATC 2 cut(s) 4, 180
NlaIII CATG 3 cut(s) 160, 267, 538
NmuCI GTSAC 1 cut(s) 779
NsbI TGCGCA 1 cut(s) 174
NspV TTCGAA 1 cut(s) 316
PaeR7I CTCGAG 1 cut(s) 474
PciSI GCTCTTC 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 2 cut(s) 62, 716
PkrI GCNGC 2 cut(s) 132, 768
PleI GAGTC 3 cut(s) 222, 250, 436
PpsI GAGTC 3 cut(s) 222, 250, 436
PspXI VCTCGAGB 1 cut(s) 474
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 766
SapI GCTCTTC 1 cut(s) 294
SaqAI TTAA 1 cut(s) 570
SatI GCNGC 2 cut(s) 131, 767
Sau3AI GATC 2 cut(s) 4, 180
SchI GAGTC 3 cut(s) 222, 250, 437
SfaNI GCATC 1 cut(s) 460
Sfr274I CTCGAG 1 cut(s) 474
SfuI TTCGAA 1 cut(s) 316
SlaI CTCGAG 1 cut(s) 474
SmlI CTYRAG 2 cut(s) 474, 569
SmoI CTYRAG 2 cut(s) 474, 569
Sse9I AATT 3 cut(s) 47, 461, 612
SsiI CCGC 3 cut(s) 22, 130, 692
SspMI CTAG 1 cut(s) 383
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 1 cut(s) 445
TaiI ACGT 2 cut(s) 30, 642
TaqI TCGA 2 cut(s) 316, 475
TasI AATT 3 cut(s) 47, 461, 612
TauI GCSGC 1 cut(s) 133
TfiI GAWTC 2 cut(s) 62, 716
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TseFI GTSAC 1 cut(s) 779
TseI GCWGC 1 cut(s) 766
Tsp45I GTSAC 1 cut(s) 779
TspDTI ATGAA 3 cut(s) 60, 98, 145
TspGWI ACGGA 1 cut(s) 632
Vha464I CTTAAG 1 cut(s) 569
XapI RAATTY 1 cut(s) 47
XcmI CCANNNNNNNNNTGG 1 cut(s) 631
XhoI CTCGAG 1 cut(s) 474
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.