AT3G53440
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010457
Physical Location & Seq
Forward (+)
19810655 .. 19812713
2059 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53440.2

Sequence Viewer

Length: 1539 bp
ATGACGAGAAGAAAATCCACCGTCGTCCTGCCGCAGCCTATTCGTCGATCAGCGAGGCTTATCTCTCTGCAGAATCGAGATAGTCAAGTGAAACCCAGGAAAGATCTGGGCTTTGGCTCGGAACCCACGAAGAAAACTCGTCGGGAAGTCTTAAGAGGTCTATCGAAGAGATTAGTATACTCATCGGATAGTCCAATCGAAGATTCGAGGTCGAAGAAATTGAACATTTCGAAAGATGGGTTTCCGTCGCTAAGGAGATCTCTTAGGCTTTCGAGTAGGGAATGTCCTGAAGTCAACAAAGAGAAGCCTAAGACTGCATCTACTTCATCTTCTCGCACGAAATCGTCGACCACTGTTTCGTCTTCTTGTGCTCTGAGACGTTCTCCTAGGTTTTCAAGTGGAGGAGGAGAATCTGTGGATCAATCTTCTTCTTCCATTGGGAAGAAATCAGGTAATAGTGTTTTGAGTAGCTGTAGTACGAAATCAATTTCATCGGAGAAAGTGAAAGGTGGAGATGGTTTGAAATCTAAGGATAGAAGTAGAAGTCGTGTTCGTCCTAAGACTAAGAAGATGTTTAGTGGTTGTGATGATAATGAAGAAGAAGAAGAAGAAGTTAGTGTCTGCCTTACTGAGAGGAAAAGGATGAGAATTGCAAAGCCGAATGAGGAAGAAAATGCTGAAGCAAAAGCTGATGAAGTGAAGAGAAAAGGAAAGGAGGAAGAAGAAGAAGAAGATGAAGAAGAAGGATTGAAGGCAAAGAATAAGCTTGAGAAAGGAGGATGGACAGAGGAGTTGGAGTTAGCTTTACAAGGAGCTTATTTGACGGTGAAGCCAAGTCCTAATTTCTGGAAAAAAGTTGCTAAGATGGTTCCTGGAAAATCTGCGCAGGAATGTTTTGATAGAGTGAACTCAGCTCTGATTACTCCTCGTCAAGCTCAGCCTCGAAGAGCCACAAAAACAATCTTATCAACGATTCCGCAGTTTTCACTTTCTGCAAGCAAACTACTGAAACCCAATTCACCAAAGACAAAGATACGACAGCGCAGAAACAATCTCTCAAAGAAAGTGGTCAGGCATTTACTGGAGAAGCAAAATCATATGGATCAAGGTCTTGGATTTGATCTCTTCTCAGTTCTTGAGCCTAACACCACAAGCAATTTTCTCTCAACTCCAATGGAAAAAGGGCGAAGTCTTCCAAAAATCCTTGAAAGTCCGGTGCCTTGTTCAAGTAAAGATCCAACAACTCTCGTTAGCCCTCCAGTACTGAAACAGGTAAAAAACAAGGCATTGCATGAGAAGTACATTGATCATCTGCATATCAGGGATGCTAAAAGAAAAGCCGAGTCAACTCGACTGGCTGGGAAAGAGAACATAAGACCTATTGAAATTCAGAAGAAGGATTCGGTGAGAGCAGCTAAGGATGCACTTTTCTTTGATGTACAAGATGCAATCCAAAAGCTAAAAGGTCTGGAAGCTGAGAACTCATCTAGTTCTTCAGAGTTTTGCTATGATCATGTCGAAACGGACGAAGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

512

Amino Acids

57.33

Weight (kDa)

9.71

Isoelectric Point (pI)

75.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53440 AT3G53440
fragaria_vesca FvH4_1g18920
malus_domestica MD01G1045600.v1.1 MD15G1306300.v1.1
prunus_persica Prupe.6G210300_v2.0.a1
pyrus_communis pycom01g07170 pycom15g27060 pycom15g27070
rosa_chinensis RchiOBHm_Chr2g0109931
rosa_laevigata RLG00000017770 RLG00000036544
rosa_multiflora Rmu_sc0005173.1_g000019
rosa_roxburghii Rroxscaffold_2G00133870
rosa_rugosa Rorug02G0163900
rosa_samantha Rh2AG215900 Rh2BG225900 Rh2CG218100 Rh2DG221400 Rh5DG403700
rosa_wichuraiana Rw2G016670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 885
AccB1I GGYRCC 1 cut(s) 1216
AccI GTMKAC 2 cut(s) 177, 347
AciI CCGC 2 cut(s) 32, 977
AclWI GGATC 3 cut(s) 426, 1110, 1229
AcsI RAATTY 1 cut(s) 1386
AcuI CTGAAG 3 cut(s) 309, 699, 1479
AfaI GTAC 4 cut(s) 478, 1263, 1301, 1440
AflII CTTAAG 1 cut(s) 151
AgsI TTSAA 7 cut(s) 223, 396, 523, 751, 1208, 1227, 1385
AjnI CCWGG 2 cut(s) 95, 871
AjuI GAANNNNNNNTTGG 2 cut(s) 187, 219
Alw21I GWGCWC 1 cut(s) 373
Alw26I GTCTC 1 cut(s) 370
AlwI GGATC 3 cut(s) 426, 1110, 1229
ApeKI GCWGC 2 cut(s) 34, 1412
ApoI RAATTY 1 cut(s) 1386
ArsI GACNNNNNNTTYG 2 cut(s) 340, 372
AspA2I CCTAGG 1 cut(s) 386
AspLEI GCGC 2 cut(s) 886, 1044
AsuHPI GGTGA 3 cut(s) 838, 1011, 1417
AsuII TTCGAA 1 cut(s) 230
AvrII CCTAGG 1 cut(s) 386
BanI GGYRCC 1 cut(s) 1216
BbsI GAAGAC 2 cut(s) 354, 1184
Bbv12I GWGCWC 1 cut(s) 373
BbvI GCAGC 2 cut(s) 46, 1424
BccI CCATC 4 cut(s) 230, 509, 774, 859
BcgI CGANNNNNNTGC 2 cut(s) 23, 57
BciT130I CCWGG 2 cut(s) 97, 873
BclI TGATCA 2 cut(s) 1306, 1510
BcoDI GTCTC 1 cut(s) 370
BfaI CTAG 2 cut(s) 387, 1488
BfmI CTRYAG 2 cut(s) 68, 472
BfrI CTTAAG 1 cut(s) 151
BglII AGATCT 2 cut(s) 103, 257
BisI GCNGC 3 cut(s) 32, 35, 1413
BlnI CCTAGG 1 cut(s) 386
BlpI GCTNAGC 1 cut(s) 936
BlsI GCNGC 3 cut(s) 33, 36, 1414
BmcAI AGTACT 1 cut(s) 1263
Bme1390I CCNGG 2 cut(s) 97, 873
BmiI GGNNCC 3 cut(s) 123, 870, 1218
BmrFI CCNGG 2 cut(s) 97, 873
BmsI GCATC 4 cut(s) 326, 1315, 1411, 1435
BpiI GAAGAC 2 cut(s) 354, 1184
BplI GAGNNNNNCTC 2 cut(s) 367, 399
BpmI CTGGAG 2 cut(s) 1103, 1242
Bpu10I CCTNAGC 2 cut(s) 251, 1416
Bpu1102I GCTNAGC 1 cut(s) 936
Bpu14I TTCGAA 1 cut(s) 230
BpuEI CTTGAG 2 cut(s) 788, 1157
BsaJI CCNNGG 2 cut(s) 95, 386
BsaWI WCCGGW 1 cut(s) 1213
BsaXI ACNNNNNCTCC 4 cut(s) 399, 429, 782, 812
Bse1I ACTGG 3 cut(s) 1086, 1259, 1359
Bse3DI GCAATG 1 cut(s) 1286
BseBI CCWGG 2 cut(s) 97, 873
BseDI CCNNGG 2 cut(s) 95, 386
BseGI GGATG 4 cut(s) 648, 785, 1330, 1426
BseMI GCAATG 1 cut(s) 1286
BseMII CTCAG 6 cut(s) 365, 621, 924, 950, 1143, 1467
BseNI ACTGG 3 cut(s) 1086, 1259, 1359
BseRI GAGGAG 4 cut(s) 417, 420, 803, 915
BseXI GCAGC 2 cut(s) 46, 1424
BseYI CCCAGC 1 cut(s) 1358
BshNI GGYRCC 1 cut(s) 1216
BsiHKAI GWGCWC 1 cut(s) 373
BsiSI CCGG 1 cut(s) 1214
BsmAI GTCTC 1 cut(s) 370
BsmBI CGTCTC 1 cut(s) 370
Bsp119I TTCGAA 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 373
Bsp1407I TGTACA 1 cut(s) 1438
Bsp143I GATC 9 cut(s) 47, 103, 257, 418, 1102, 1120, 1234, 1306, 1510
Bsp1720I GCTNAGC 1 cut(s) 936
BspACI CCGC 2 cut(s) 32, 977
BspCNI CTCAG 6 cut(s) 366, 622, 923, 949, 1142, 1468
BspLI GGNNCC 3 cut(s) 123, 870, 1218
BspMAI CTGCAG 1 cut(s) 72
BspPI GGATC 3 cut(s) 426, 1110, 1229
BspQI GCTCTTC 1 cut(s) 940
BspT104I TTCGAA 1 cut(s) 230
BspT107I GGYRCC 1 cut(s) 1216
BspTI CTTAAG 1 cut(s) 151
BsrDI GCAATG 1 cut(s) 1286
BsrGI TGTACA 1 cut(s) 1438
BsrI ACTGG 3 cut(s) 1086, 1259, 1359
BssECI CCNNGG 2 cut(s) 95, 386
BssMI GATC 9 cut(s) 47, 103, 257, 418, 1102, 1120, 1234, 1306, 1510
BssNAI GTATAC 1 cut(s) 178
BssT1I CCWWGG 1 cut(s) 386
Bst1107I GTATAC 1 cut(s) 178
Bst2UI CCWGG 2 cut(s) 97, 873
Bst4CI ACNGT 3 cut(s) 22, 355, 826
Bst6I CTCTTC 4 cut(s) 161, 695, 940, 1130
BstAFI CTTAAG 1 cut(s) 151
BstAUI TGTACA 1 cut(s) 1438
BstBI TTCGAA 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 997
BstF5I GGATG 4 cut(s) 648, 785, 1330, 1426
BstHHI GCGC 2 cut(s) 886, 1044
BstKTI GATC 9 cut(s) 50, 106, 260, 421, 1105, 1123, 1237, 1309, 1513
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 9 cut(s) 47, 103, 257, 418, 1102, 1120, 1234, 1306, 1510
BstMWI GCNNNNNNNGC 1 cut(s) 1421
BstNI CCWGG 2 cut(s) 97, 873
BstSCI CCNGG 2 cut(s) 95, 871
BstSFI CTRYAG 2 cut(s) 68, 472
BstV1I GCAGC 2 cut(s) 46, 1424
BstV2I GAAGAC 2 cut(s) 354, 1184
BstX2I RGATCY 3 cut(s) 103, 257, 1234
BstYI RGATCY 3 cut(s) 103, 257, 1234
BstZ17I GTATAC 1 cut(s) 178
BtsCI GGATG 4 cut(s) 648, 785, 1330, 1426
BtsIMutI CAGTG 1 cut(s) 351
Cac8I GCNNGC 1 cut(s) 997
CfoI GCGC 2 cut(s) 886, 1044
Csp6I GTAC 4 cut(s) 477, 1262, 1300, 1439
CspCI CAANNNNNGTGG 2 cut(s) 1047, 1082
CviAII CATG 2 cut(s) 1292, 1514
CviQI GTAC 4 cut(s) 477, 1262, 1300, 1439
DpnI GATC 9 cut(s) 49, 105, 259, 420, 1104, 1122, 1236, 1308, 1512
DpnII GATC 9 cut(s) 47, 103, 257, 418, 1102, 1120, 1234, 1306, 1510
Eam1104I CTCTTC 4 cut(s) 161, 695, 940, 1130
EarI CTCTTC 4 cut(s) 161, 695, 940, 1130
Eco130I CCWWGG 1 cut(s) 386
Eco57I CTGAAG 3 cut(s) 309, 699, 1479
EcoRII CCWGG 2 cut(s) 95, 871
EcoT14I CCWWGG 1 cut(s) 386
ErhI CCWWGG 1 cut(s) 386
Esp3I CGTCTC 1 cut(s) 370
FaeI CATG 2 cut(s) 1295, 1517
FaiI YATR 8 cut(s) 178, 1098, 1100, 1293, 1317, 1373, 1509, 1515
FatI CATG 2 cut(s) 1291, 1513
FauNDI CATATG 1 cut(s) 1098
FbaI TGATCA 2 cut(s) 1306, 1510
FblI GTMKAC 2 cut(s) 177, 347
Fnu4HI GCNGC 3 cut(s) 32, 35, 1413
FokI GGATG 4 cut(s) 655, 792, 1337, 1433
Fsp4HI GCNGC 3 cut(s) 32, 35, 1413
FspBI CTAG 2 cut(s) 387, 1488
FspI TGCGCA 1 cut(s) 885
GlaI GCGC 2 cut(s) 885, 1043
GluI GCNGC 3 cut(s) 32, 35, 1413
GsaI CCCAGC 1 cut(s) 1362
GsuI CTGGAG 2 cut(s) 1103, 1242
HapII CCGG 1 cut(s) 1214
HhaI GCGC 2 cut(s) 886, 1044
Hin1II CATG 2 cut(s) 1295, 1517
Hin6I GCGC 2 cut(s) 884, 1042
HinP1I GCGC 2 cut(s) 884, 1042
HincII GTYRAC 3 cut(s) 295, 348, 1347
HindII GTYRAC 3 cut(s) 295, 348, 1347
HindIII AAGCTT 1 cut(s) 764
HinfI GANTC 6 cut(s) 73, 203, 410, 973, 1343, 1400
HpaII CCGG 1 cut(s) 1214
HphI GGTGA 3 cut(s) 838, 1011, 1417
Hpy166II GTNNAC 5 cut(s) 178, 295, 348, 907, 1347
Hpy188I TCNGA 7 cut(s) 121, 187, 375, 496, 918, 1392, 1498
Hpy188III TCNNGA 6 cut(s) 77, 143, 287, 847, 1136, 1469
Hpy8I GTNNAC 5 cut(s) 178, 295, 348, 907, 1347
Hpy99I CGWCG 5 cut(s) 26, 48, 144, 250, 349
HpyAV CCTTC 3 cut(s) 737, 745, 1390
HpyCH4III ACNGT 3 cut(s) 22, 355, 826
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 8 cut(s) 70, 317, 653, 995, 1291, 1315, 1424, 1448
HpyF10VI GCNNNNNNNGC 1 cut(s) 1421
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 2 cut(s) 1295, 1517
HspAI GCGC 2 cut(s) 884, 1042
Ksp22I TGATCA 2 cut(s) 1306, 1510
Kzo9I GATC 9 cut(s) 47, 103, 257, 418, 1102, 1120, 1234, 1306, 1510
LguI GCTCTTC 1 cut(s) 940
LmnI GCTCC 1 cut(s) 812
Lsp1109I GCAGC 2 cut(s) 46, 1424
LweI GCATC 4 cut(s) 326, 1315, 1411, 1435
MaeI CTAG 2 cut(s) 387, 1488
MaeII ACGT 1 cut(s) 379
MalI GATC 9 cut(s) 49, 105, 259, 420, 1104, 1122, 1236, 1308, 1512
MboI GATC 9 cut(s) 47, 103, 257, 418, 1102, 1120, 1234, 1306, 1510
MflI RGATCY 3 cut(s) 103, 257, 1234
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 7 cut(s) 218, 486, 648, 841, 1015, 1156, 1386
MlyI GAGTC 1 cut(s) 1352
MmeI TCCRAC 2 cut(s) 774, 1262
MseI TTAA 2 cut(s) 152, 1537
MspCI CTTAAG 1 cut(s) 151
MspI CCGG 1 cut(s) 1214
MspR9I CCNGG 2 cut(s) 97, 873
MvaI CCWGG 2 cut(s) 97, 873
MwoI GCNNNNNNNGC 1 cut(s) 1421
NdeI CATATG 1 cut(s) 1098
NdeII GATC 9 cut(s) 47, 103, 257, 418, 1102, 1120, 1234, 1306, 1510
NlaIII CATG 2 cut(s) 1295, 1517
NlaIV GGNNCC 3 cut(s) 123, 870, 1218
NmeAIII GCCGAG 1 cut(s) 1366
NsbI TGCGCA 1 cut(s) 885
NspV TTCGAA 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 940
PcsI WCGNNNNNNNCGW 3 cut(s) 125, 344, 1524
PfeI GAWTC 5 cut(s) 73, 203, 410, 973, 1400
PfoI TCCNGGA 1 cut(s) 871
PkrI GCNGC 3 cut(s) 33, 36, 1414
PleI GAGTC 1 cut(s) 1351
PpsI GAGTC 1 cut(s) 1351
Psp6I CCWGG 2 cut(s) 95, 871
PspFI CCCAGC 1 cut(s) 1358
PspGI CCWGG 2 cut(s) 95, 871
PspN4I GGNNCC 3 cut(s) 123, 870, 1218
PstI CTGCAG 1 cut(s) 72
PsuI RGATCY 3 cut(s) 103, 257, 1234
RsaI GTAC 4 cut(s) 478, 1263, 1301, 1440
RsaNI GTAC 4 cut(s) 477, 1262, 1300, 1439
SalI GTCGAC 1 cut(s) 346
SapI GCTCTTC 1 cut(s) 940
SaqAI TTAA 2 cut(s) 152, 1537
SatI GCNGC 3 cut(s) 32, 35, 1413
Sau3AI GATC 9 cut(s) 47, 103, 257, 418, 1102, 1120, 1234, 1306, 1510
ScaI AGTACT 1 cut(s) 1263
SchI GAGTC 1 cut(s) 1352
ScrFI CCNGG 2 cut(s) 97, 873
SduI GDGCHC 1 cut(s) 373
SfaNI GCATC 4 cut(s) 326, 1315, 1411, 1435
SfcI CTRYAG 2 cut(s) 68, 472
SfuI TTCGAA 1 cut(s) 230
SmlI CTYRAG 3 cut(s) 151, 767, 1136
SmoI CTYRAG 3 cut(s) 151, 767, 1136
Sse9I AATT 7 cut(s) 218, 486, 648, 841, 1015, 1156, 1386
SsiI CCGC 2 cut(s) 32, 977
SspMI CTAG 2 cut(s) 387, 1488
StyD4I CCNGG 2 cut(s) 95, 871
StyI CCWWGG 1 cut(s) 386
TaaI ACNGT 3 cut(s) 22, 355, 826
TaiI ACGT 1 cut(s) 382
TasI AATT 7 cut(s) 218, 486, 648, 841, 1015, 1156, 1386
TatI WGTACW 3 cut(s) 1261, 1299, 1438
TauI GCSGC 1 cut(s) 34
TfiI GAWTC 5 cut(s) 73, 203, 410, 973, 1400
Tru1I TTAA 2 cut(s) 152, 1537
Tru9I TTAA 2 cut(s) 152, 1537
TscAI CASTG 1 cut(s) 358
TseI GCWGC 2 cut(s) 34, 1412
TspDTI ATGAA 5 cut(s) 315, 480, 609, 708, 750
TspGWI ACGGA 2 cut(s) 234, 1538
TspRI CASTG 1 cut(s) 358
Vha464I CTTAAG 1 cut(s) 151
XapI RAATTY 1 cut(s) 1386
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
XmaJI CCTAGG 1 cut(s) 386
XmiI GTMKAC 2 cut(s) 177, 347
XspI CTAG 2 cut(s) 387, 1488
ZrmI AGTACT 1 cut(s) 1263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.