Rw2G016670
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0010457
Physical Location & Seq
Forward (+)
20123511 .. 20127315
3805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G016670.1

Sequence Viewer

Length: 1782 bp
ATGAGGAATGCCCACCAGGTGTTTGTGAAAATGCCTGAGAGAGACTCAGCGGCCTCCACACCCCAACAATCCTCAATTCTGCGAAGATCTCCCAGATTTCTTCACCCCAACCCCAAGACCACTCCAGAACCACAGAAACTCGCCACACCTCGCCGGAAGCCTCAGAGAAAGACCTCTGCAGAATCCGAAAACCAGAAAACCCCCAAATCCAAATTCAGAAGGAACGGGGCAAAAGCTTTGGATTGTAGACTTCTTGAGAAGAGTAACAGTCCAGAACCGGAGCAAACGGCCACGATTCTCCGAAAGTCGCAGCGGCTTGTGGAATTGAAAGAGAGATCTGGGCAGTTGGAAAACCCTAAAACCCCCAAATTTAAATCTAGAAGCGACAATGTGGTACGCTCTTTGAATCTTTCGATTGGCTCGAAGAAATTGAGTAAAGCCAAGGCTGGGTCGAGAGAATCTAAGGTTTTGAATCAGGAGGTGGTCGTGGTGGATGAAGATGAGGATTCCTCCCCAGAGAGAGTCTCAAAGAAATTGGGGGAATCTCATTATGGGTCAAGAAAAGCTCCAAGATTGAACCATGTCAGTGATGGGTTTCAGACTCCTAGACGATCTACGAGGTTGGGTGGTAAGCAGAATGTGGTTGACAAACAGACTGATAAGGCAACTAGTGGTAGATCTAAGAGCAAGTCCAAAATTTCTTTGGATAAAGAGAAGGTCTCAGGTGTTCGGAAAGATGGAGCTTGTGTGAATTCAGGCGAAATTGTTTTGGAAAAGAGCAAAAGGGTGAGTAAGAAAAGTTCAGTCGGTGGTGTTGAAACAGTTAGTGGGGAAGGTGGAGAGGGCAAAGCTCAAGAGTTAGATTGCAGAGATAAAAAAGTTGCGGTTAGGAGGAAGAGAAAGAGAGGTGGAGAAGATGTCAAGGTCGCCAAAGGGTGGACAAAGGAACAAGAATTGGCCTTGCAGAGAGCTTATTTGCTAGCAAAGCCGACGCCTGGTTTCTGGAAGCAGGTTTCTAAACTGGTTCCCGGAAAGTCTGCACAGGATTGCTTTGATAGGATACATTCTGACCATATAACCCCACCCCAACCTCGTCCTCGGTCGAGGGCAAAGATTACTACAAATTCATCCCCCCTTGGAGGCTTTTCACTCTCTGCAAGTAGACTGCTTAATCCTGTTGAGTCAAAGGCTAAAGGACATGGCTGCAATAAACAGAGAAGCCATCTTGCGCAGAAAGCTGTCAGAGCATTATTACACAAGCATTATCAAGTGCACCAAGAGTTTGAGGCAGATCTATTTTCAGTACTTGAGCCAAGTGTAGGTCCATCTACTGAGACTTCTCAGCCTAGTGTTATACCTTCTACTCCAACAAATTCACAGGTAAAGCAGGGATTCCTTCACAAGAGCAGTCAAATATCATCTGCGGGTCATAAGAAGCCCCTCTCAAGGTTTAGTAACTCATCTGAGACATCTCTTGTTAGTCCTCCGGTATTAAAGCAGGTCAAGAACAAGGTCTTGCATGAGAAATATATTGACCAATTGCATATCAGGGAAGCTAAGAGAAAAACATTAGCTAAAAACACTAAAAAATCCACTGGTGGAATCGATGAAACACAAAAGAGTCATATTCAGGAAGTGGATCTGAGAACTGCAAAAATTGCCCTGGTTTCTGATGCAAGAGATGCTATCAATAAGCTCAAACATCTGCAGGAAAACTCTTCGGAGTCGGATGATGATGGAATTGCAAGGGATGATGAGGAAGATGAAGATGAGACTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

593

Amino Acids

65.73

Weight (kDa)

10.01

Isoelectric Point (pI)

54.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53440 AT3G53440
fragaria_vesca FvH4_1g18920
malus_domestica MD01G1045600.v1.1 MD15G1306300.v1.1
prunus_persica Prupe.6G210300_v2.0.a1
pyrus_communis pycom01g07170 pycom15g27060 pycom15g27070
rosa_chinensis RchiOBHm_Chr2g0109931
rosa_laevigata RLG00000017770 RLG00000036544
rosa_multiflora Rmu_sc0005173.1_g000019
rosa_roxburghii Rroxscaffold_2G00133870
rosa_rugosa Rorug02G0163900
rosa_samantha Rh2AG215900 Rh2BG225900 Rh2CG218100 Rh2DG221400 Rh5DG403700
rosa_wichuraiana Rw2G016670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1230
Acc36I ACCTGC 2 cut(s) 1000, 1489
AccB7I CCANNNNNTGG 1 cut(s) 936
AccI GTMKAC 2 cut(s) 247, 1162
AciI CCGC 4 cut(s) 50, 313, 884, 1424
AclWI GGATC 1 cut(s) 1647
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 6 cut(s) 212, 368, 696, 751, 1123, 1372
AcyI GRCGYC 1 cut(s) 992
AdeI CACNNNGTG 1 cut(s) 19
AfaI GTAC 2 cut(s) 396, 1305
AfiI CCNNNNNNNGG 6 cut(s) 447, 936, 995, 1139, 1319, 1446
AgsI TTSAA 5 cut(s) 328, 406, 472, 577, 818
AhlI ACTAGT 1 cut(s) 668
AjnI CCWGG 3 cut(s) 15, 994, 1662
AjuI GAANNNNNNNTTGG 2 cut(s) 197, 229
AluBI AGCT 9 cut(s) 236, 566, 743, 851, 971, 1238, 1556, 1574, 1696
AluI AGCT 9 cut(s) 236, 566, 743, 851, 971, 1238, 1556, 1574, 1696
Alw21I GWGCWC 1 cut(s) 1275
Alw26I GTCTC 6 cut(s) 36, 529, 724, 1328, 1460, 1766
Alw44I GTGCAC 1 cut(s) 1271
AlwI GGATC 1 cut(s) 1647
AoxI GGCC 3 cut(s) 51, 288, 957
ApaLI GTGCAC 1 cut(s) 1271
ApeKI GCWGC 2 cut(s) 310, 1203
ApoI RAATTY 6 cut(s) 212, 368, 696, 751, 1123, 1372
AspLEI GCGC 1 cut(s) 1231
AspS9I GGNCC 1 cut(s) 1322
AsuC2I CCSGG 1 cut(s) 1029
AsuHPI GGTGA 2 cut(s) 95, 799
AsuNHI GCTAGC 1 cut(s) 979
AvaII GGWCC 1 cut(s) 1322
BaeGI GKGCMC 1 cut(s) 1275
Bbv12I GWGCWC 1 cut(s) 1275
BbvI GCAGC 2 cut(s) 322, 1190
BccI CCATC 5 cut(s) 584, 731, 1230, 1333, 1730
BceAI ACGGC 1 cut(s) 303
BciT130I CCWGG 3 cut(s) 17, 996, 1664
BciVI GTATCC 1 cut(s) 1053
BcnI CCSGG 1 cut(s) 1029
BcoDI GTCTC 6 cut(s) 36, 529, 724, 1328, 1460, 1766
BcuI ACTAGT 1 cut(s) 668
BfaI CTAG 5 cut(s) 378, 606, 669, 980, 1347
BfmI CTRYAG 2 cut(s) 177, 1706
BfuAI ACCTGC 2 cut(s) 1000, 1489
BfuI GTATCC 1 cut(s) 1053
BglII AGATCT 4 cut(s) 86, 335, 677, 1291
BisI GCNGC 4 cut(s) 51, 311, 314, 1204
BlsI GCNGC 4 cut(s) 52, 312, 315, 1205
BmcAI AGTACT 1 cut(s) 1305
Bme1390I CCNGG 4 cut(s) 17, 996, 1029, 1664
Bme18I GGWCC 1 cut(s) 1322
BmgT120I GGNCC 1 cut(s) 1322
BmiI GGNNCC 1 cut(s) 1026
BmrFI CCNGG 4 cut(s) 17, 996, 1029, 1664
BmsI GCATC 2 cut(s) 1663, 1672
BmtI GCTAGC 1 cut(s) 983
BplI GAGNNNNNCTC 8 cut(s) 29, 61, 494, 526, 509, 541, 704, 736
BpmI CTGGAG 1 cut(s) 108
BpuEI CTTGAG 4 cut(s) 275, 837, 1328, 1429
BpuMI CCSGG 1 cut(s) 1029
Bsa29I ATCGAT 1 cut(s) 1605
BsaHI GRCGYC 1 cut(s) 992
BsaI GGTCTC 1 cut(s) 724
BsaJI CCNNGG 4 cut(s) 441, 1097, 1135, 1662
BsaWI WCCGGW 2 cut(s) 277, 1486
BsaXI ACNNNNNCTCC 4 cut(s) 732, 762, 903, 933
Bsc4I CCNNNNNNNGG 6 cut(s) 447, 936, 995, 1139, 1319, 1446
Bse1I ACTGG 2 cut(s) 1026, 1600
BseBI CCWGG 3 cut(s) 17, 996, 1664
BseCI ATCGAT 1 cut(s) 1605
BseDI CCNNGG 4 cut(s) 441, 1097, 1135, 1662
BseGI GGATG 4 cut(s) 499, 1127, 1735, 1756
BseLI CCNNNNNNNGG 6 cut(s) 447, 936, 995, 1139, 1319, 1446
BseMII CTCAG 8 cut(s) 27, 60, 176, 735, 1323, 1355, 1455, 1634
BseNI ACTGG 2 cut(s) 1026, 1600
BseSI GKGCMC 1 cut(s) 1275
BseXI GCAGC 2 cut(s) 322, 1190
BseYI CCCAGC 1 cut(s) 446
BsgI GTGCAG 1 cut(s) 1023
Bsh1285I CGRYCG 1 cut(s) 1103
BshFI GGCC 3 cut(s) 53, 290, 959
BshVI ATCGAT 1 cut(s) 1605
BsiEI CGRYCG 1 cut(s) 1103
BsiHKAI GWGCWC 1 cut(s) 1275
BsiSI CCGG 4 cut(s) 154, 278, 1029, 1487
BslI CCNNNNNNNGG 6 cut(s) 447, 936, 995, 1139, 1319, 1446
BsmAI GTCTC 6 cut(s) 36, 529, 724, 1328, 1460, 1766
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 3 cut(s) 53, 290, 959
Bso31I GGTCTC 1 cut(s) 724
Bsp1286I GDGCHC 1 cut(s) 1275
Bsp143I GATC 6 cut(s) 86, 335, 611, 677, 1291, 1639
BspACI CCGC 4 cut(s) 50, 313, 884, 1424
BspANI GGCC 3 cut(s) 53, 290, 959
BspCNI CTCAG 8 cut(s) 28, 59, 175, 734, 1324, 1354, 1456, 1635
BspDI ATCGAT 1 cut(s) 1605
BspLI GGNNCC 1 cut(s) 1026
BspMAI CTGCAG 2 cut(s) 181, 1710
BspMI ACCTGC 2 cut(s) 1000, 1489
BspOI GCTAGC 1 cut(s) 983
BspPI GGATC 1 cut(s) 1647
BspTNI GGTCTC 1 cut(s) 724
BsrI ACTGG 2 cut(s) 1026, 1600
BssECI CCNNGG 4 cut(s) 441, 1097, 1135, 1662
BssMI GATC 6 cut(s) 86, 335, 611, 677, 1291, 1639
BssNI GRCGYC 1 cut(s) 992
BssT1I CCWWGG 2 cut(s) 441, 1135
Bst2UI CCWGG 3 cut(s) 17, 996, 1664
Bst4CI ACNGT 2 cut(s) 269, 823
Bst6I CTCTTC 3 cut(s) 254, 890, 1723
BstACI GRCGYC 1 cut(s) 992
BstAPI GCANNNNNTGC 2 cut(s) 1658, 1682
BstC8I GCNNGC 1 cut(s) 981
BstF5I GGATG 4 cut(s) 499, 1127, 1735, 1756
BstHHI GCGC 1 cut(s) 1231
BstKTI GATC 6 cut(s) 89, 338, 614, 680, 1294, 1642
BstMAI GTCTC 6 cut(s) 36, 529, 724, 1328, 1460, 1766
BstMBI GATC 6 cut(s) 86, 335, 611, 677, 1291, 1639
BstMCI CGRYCG 1 cut(s) 1103
BstMWI GCNNNNNNNGC 5 cut(s) 985, 1235, 1244, 1658, 1682
BstNI CCWGG 3 cut(s) 17, 996, 1664
BstSCI CCNGG 4 cut(s) 15, 994, 1027, 1662
BstSFI CTRYAG 2 cut(s) 177, 1706
BstSLI GKGCMC 1 cut(s) 1275
BstV1I GCAGC 2 cut(s) 322, 1190
BstX2I RGATCY 5 cut(s) 86, 335, 677, 1291, 1639
BstYI RGATCY 5 cut(s) 86, 335, 677, 1291, 1639
Bsu15I ATCGAT 1 cut(s) 1605
BsuI GTATCC 1 cut(s) 1053
BsuRI GGCC 3 cut(s) 53, 290, 959
BsuTUI ATCGAT 1 cut(s) 1605
BtsCI GGATG 4 cut(s) 499, 1127, 1735, 1756
BtsIMutI CAGTG 2 cut(s) 592, 1593
BveI ACCTGC 2 cut(s) 1000, 1489
Cac8I GCNNGC 1 cut(s) 981
CfoI GCGC 1 cut(s) 1231
Cfr13I GGNCC 1 cut(s) 1322
ClaI ATCGAT 1 cut(s) 1605
CseI GACGC 1 cut(s) 1000
CsiI ACCWGGT 1 cut(s) 15
Csp6I GTAC 2 cut(s) 395, 1304
CviAII CATG 3 cut(s) 581, 1199, 1520
CviQI GTAC 2 cut(s) 395, 1304
DpnI GATC 6 cut(s) 88, 337, 613, 679, 1293, 1641
DpnII GATC 6 cut(s) 86, 335, 611, 677, 1291, 1639
DraI TTTAAA 1 cut(s) 373
DraIII CACNNNGTG 1 cut(s) 19
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 3 cut(s) 254, 890, 1723
EarI CTCTTC 3 cut(s) 254, 890, 1723
Eco130I CCWWGG 2 cut(s) 441, 1135
Eco31I GGTCTC 1 cut(s) 724
Eco47I GGWCC 1 cut(s) 1322
EcoRI GAATTC 1 cut(s) 751
EcoRII CCWGG 3 cut(s) 15, 994, 1662
EcoT14I CCWWGG 2 cut(s) 441, 1135
ErhI CCWWGG 2 cut(s) 441, 1135
FaeI CATG 3 cut(s) 584, 1202, 1523
FatI CATG 3 cut(s) 580, 1198, 1519
FauI CCCGC 1 cut(s) 1417
FblI GTMKAC 2 cut(s) 247, 1162
Fnu4HI GCNGC 4 cut(s) 51, 311, 314, 1204
FokI GGATG 4 cut(s) 506, 1114, 1742, 1763
Fsp4HI GCNGC 4 cut(s) 51, 311, 314, 1204
FspBI CTAG 5 cut(s) 378, 606, 669, 980, 1347
FspI TGCGCA 1 cut(s) 1230
GlaI GCGC 1 cut(s) 1230
GluI GCNGC 4 cut(s) 51, 311, 314, 1204
GsaI CCCAGC 1 cut(s) 450
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 3 cut(s) 53, 290, 959
HapII CCGG 4 cut(s) 154, 278, 1029, 1487
HgaI GACGC 1 cut(s) 1000
HhaI GCGC 1 cut(s) 1231
Hin1I GRCGYC 1 cut(s) 992
Hin1II CATG 3 cut(s) 584, 1202, 1523
Hin6I GCGC 1 cut(s) 1229
HinP1I GCGC 1 cut(s) 1229
HincII GTYRAC 1 cut(s) 646
HindII GTYRAC 1 cut(s) 646
HindIII AAGCTT 1 cut(s) 234
HpaII CCGG 4 cut(s) 154, 278, 1029, 1487
HphI GGTGA 2 cut(s) 95, 799
Hpy166II GTNNAC 5 cut(s) 248, 646, 939, 1163, 1273
Hpy8I GTNNAC 5 cut(s) 248, 646, 939, 1163, 1273
Hpy99I CGWCG 1 cut(s) 994
HpyAV CCTTC 5 cut(s) 213, 709, 827, 1368, 1406
HpyCH4III ACNGT 2 cut(s) 269, 823
HpyF10VI GCNNNNNNNGC 5 cut(s) 985, 1235, 1244, 1658, 1682
Hsp92I GRCGYC 1 cut(s) 992
Hsp92II CATG 3 cut(s) 584, 1202, 1523
HspAI GCGC 1 cut(s) 1229
Kzo9I GATC 6 cut(s) 86, 335, 611, 677, 1291, 1639
LmnI GCTCC 3 cut(s) 280, 571, 740
Lsp1109I GCAGC 2 cut(s) 322, 1190
LweI GCATC 2 cut(s) 1663, 1672
MabI ACCWGGT 1 cut(s) 15
MaeI CTAG 5 cut(s) 378, 606, 669, 980, 1347
MaeIII GTNAC 2 cut(s) 263, 1454
MalI GATC 6 cut(s) 88, 337, 613, 679, 1293, 1641
MboI GATC 6 cut(s) 86, 335, 611, 677, 1291, 1639
MfeI CAATTG 1 cut(s) 1538
MflI RGATCY 5 cut(s) 86, 335, 677, 1291, 1639
MhlI GDGCHC 1 cut(s) 1275
MlyI GAGTC 6 cut(s) 38, 531, 595, 1190, 1630, 1733
MmeI TCCRAC 3 cut(s) 327, 1391, 1707
MseI TTAA 3 cut(s) 372, 1170, 1493
MslI CAYNNNNRTG 1 cut(s) 585
MspA1I CMGCKG 2 cut(s) 50, 313
MspI CCGG 4 cut(s) 154, 278, 1029, 1487
MspR9I CCNGG 4 cut(s) 17, 996, 1029, 1664
MunI CAATTG 1 cut(s) 1538
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 3 cut(s) 17, 996, 1664
MwoI GCNNNNNNNGC 5 cut(s) 985, 1235, 1244, 1658, 1682
NciI CCSGG 1 cut(s) 1029
NdeII GATC 6 cut(s) 86, 335, 611, 677, 1291, 1639
NheI GCTAGC 1 cut(s) 979
NlaIII CATG 3 cut(s) 584, 1202, 1523
NlaIV GGNNCC 1 cut(s) 1026
NsbI TGCGCA 1 cut(s) 1230
PcsI WCGNNNNNNNCGW 1 cut(s) 419
PctI GAATGC 1 cut(s) 13
PfeI GAWTC 9 cut(s) 182, 295, 406, 458, 472, 506, 542, 1392, 1602
PflMI CCANNNNNTGG 1 cut(s) 936
PfoI TCCNGGA 1 cut(s) 1027
PkrI GCNGC 4 cut(s) 52, 312, 315, 1205
PleI GAGTC 6 cut(s) 38, 530, 595, 1189, 1629, 1732
PpsI GAGTC 6 cut(s) 38, 530, 595, 1189, 1629, 1732
Psp6I CCWGG 3 cut(s) 15, 994, 1662
PspFI CCCAGC 1 cut(s) 446
PspGI CCWGG 3 cut(s) 15, 994, 1662
PspN4I GGNNCC 1 cut(s) 1026
PspPI GGNCC 1 cut(s) 1322
PsrI GAACNNNNNNTAC 2 cut(s) 784, 816
PstI CTGCAG 2 cut(s) 181, 1710
PsuI RGATCY 5 cut(s) 86, 335, 677, 1291, 1639
RsaI GTAC 2 cut(s) 396, 1305
RsaNI GTAC 2 cut(s) 395, 1304
RseI CAYNNNNRTG 1 cut(s) 585
SaqAI TTAA 3 cut(s) 372, 1170, 1493
SatI GCNGC 4 cut(s) 51, 311, 314, 1204
Sau3AI GATC 6 cut(s) 86, 335, 611, 677, 1291, 1639
Sau96I GGNCC 1 cut(s) 1322
ScaI AGTACT 1 cut(s) 1305
SchI GAGTC 6 cut(s) 38, 531, 595, 1190, 1630, 1733
ScrFI CCNGG 4 cut(s) 17, 996, 1029, 1664
SduI GDGCHC 1 cut(s) 1275
SexAI ACCWGGT 1 cut(s) 15
SfaNI GCATC 2 cut(s) 1663, 1672
SfcI CTRYAG 2 cut(s) 177, 1706
SinI GGWCC 1 cut(s) 1322
SmiI ATTTAAAT 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 585
SmlI CTYRAG 4 cut(s) 254, 852, 1307, 1444
SmoI CTYRAG 4 cut(s) 254, 852, 1307, 1444
SpeI ACTAGT 1 cut(s) 668
SsiI CCGC 4 cut(s) 50, 313, 884, 1424
SspMI CTAG 5 cut(s) 378, 606, 669, 980, 1347
StyD4I CCNGG 4 cut(s) 15, 994, 1027, 1662
StyI CCWWGG 2 cut(s) 441, 1135
SwaI ATTTAAAT 1 cut(s) 373
TaaI ACNGT 2 cut(s) 269, 823
TaqI TCGA 5 cut(s) 413, 422, 452, 1103, 1605
TaqII GACCGA 1 cut(s) 1089
TatI WGTACW 1 cut(s) 1303
TauI GCSGC 2 cut(s) 53, 316
TfiI GAWTC 9 cut(s) 182, 295, 406, 458, 472, 506, 542, 1392, 1602
Tru1I TTAA 3 cut(s) 372, 1170, 1493
Tru9I TTAA 3 cut(s) 372, 1170, 1493
TscAI CASTG 2 cut(s) 592, 1600
TseI GCWGC 2 cut(s) 310, 1203
TspDTI ATGAA 4 cut(s) 510, 1116, 1623, 1779
TspRI CASTG 2 cut(s) 592, 1600
Van91I CCANNNNNTGG 1 cut(s) 936
VneI GTGCAC 1 cut(s) 1271
VpaK11BI GGWCC 1 cut(s) 1322
XapI RAATTY 6 cut(s) 212, 368, 696, 751, 1123, 1372
XbaI TCTAGA 1 cut(s) 377
XcmI CCANNNNNNNNNTGG 2 cut(s) 587, 700
XmiI GTMKAC 2 cut(s) 247, 1162
XspI CTAG 5 cut(s) 378, 606, 669, 980, 1347
ZrmI AGTACT 1 cut(s) 1305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.