Rh2CG218100
MYB Family

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
21525087 .. 21529031
3945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG218100.1

Sequence Viewer

Length: 1803 bp
ATGAGGAATGCCCACCAGGTGTTTGTGAAAATGCCTGAGAGAGACTCAGTGGCCTCCACACCCCAACAATCCTCAATTCTGCGAAGATCTCCCAGATTTCTTCACCCCAAGACCACTCCAGAACCACAGAAACTCGCCACACCTCGCCGGAAGCCTCAGAGAAAGACCGCTGCAGAATCCGAAAACCAGAAAACCCCCAAATCCAAATTCAGAAGGAACGGGGCAAAAGCTTTGGATTGTAGACTTCTTGAGAAGAGTAACAGTCCAGAACCGGAGCAAACGGCCACGAGTCTCCGAAAGTCGCAGCGGCTTGTGGAATTGAAAGAGAGATCTGGGCAGTTGGAAAACCCTAAAACCCCCAAATTTAAATCTAGAAGCGACAATGTGGTACGCTCTTTGAATCTTTCGATTGGCTCGAAGAAATTGAGTAAAGCCAATGCTGGGTCGAGAGAATCTAAGGTTTTGAATCAGGAGGTGGTCGTGGATGAAGCTGAGGATTCCTCCCCAGAGAGAGTCTCAAAGAACTTGGGGGAATCTCATTATGGGTCTCGTAATTGCGAGAAATCGAGTTCTGGGTCAAGAAAAGCTCCAAGATTGAACAATGTCAGTGATGGGTTTCAGACTCCTAGACGATCTTCGAGGTTGGGTGGTAAGCAGAATGTGGTTGACAAACAAACTGATAAGGCAACTAGTGGTAGATCTAAGAGTAAGTCCAAAATTTCTTTGGATAAAGAGAAGGTCTCAGGTGTTCGGAAAGATGGAGCTTGTGTGAATTCAGGCGAAATTGTTTTGGAAAAGAGCAAAAGGGTGAGTAAGAAAAGTTCAGTCGGTGGTGTTGAAACAGTTAGTGTGGAAGGTGGAGAGGGCAAAGCTCAAGAGTTAGATTGTGGAGATAAAAAAGTTGCGGTTAGGAGGAAGAGAAAGAGAGGTGGAGAAGATGTCAAGGTCGCCAAAGGTTGGACAAAGGAACAAGAATTGGCCTTGCAGAGAGCTTATTTGCTAGCAAAGCCGACGCCTGGTTTCTGGAAGCAGGTTTCTAAACTGGTTCCCGGAAAGTCTGCACAGGATTGCTTTGATAGGATACATTCTGACCATATAACCCCACCCCAACCTCGTCCTCGGTCGAGGGCAAAGATTACTACAAATTCATCCCCCCTTGGAGGATTTTCACTCTCTGCAAGTAGACTGCTTAATCCTGTTGAGTCAAAGGCTAAAAGACATGGCTGCAGTAAACAGAGAAGCCATCTTGCGCAGAAAGCTGTCAGAGCATTATTACACAAGCATTATCAAGTGCACCAAGAGTTTGAGGCAGATCTATTTTCAGTACTTGAGCCAAGTGTAGGTCCATCTACTGAGACTTCTCAGCCTAGTGTTGTACCTTCTACTCCAACAAATTCACAGGTAAAGCAGGGATTCCTTCACAAGAGCAGTCAAATATCATCTGCGGGTCATAAGAAGCCCCTCTCAAGGTTTAGTAACTCATCTGAGACATCTCTTGTTAGTCCTCCGGTATTAAAGCAGGTCAAGAACAAGGTCTTGCATGAGAAATATATTGACCAATTGCATATCAGGGAAGCTAAGAGAAAAGCATTAGCTAAAAACACTAAAAAATCCACTGGTGGAATCGATGAAACACAAAAGAGTCATATTCAGGAGGTGGATCTGAGAACTGCAAAAATTGCCCTGGTTTCTGATGCAAGAGATGCTATAAATAAGCTCAAACATCTGCAGGAAAACTCCTCGGAGTCGGATGATGATGGAATTGCAAGGGATGATGAGGAAGATGAAGATGAGACTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

600

Amino Acids

66.3

Weight (kDa)

10.0

Isoelectric Point (pI)

56.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010457)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1251
Acc36I ACCTGC 2 cut(s) 1021, 1510
AccB7I CCANNNNNTGG 1 cut(s) 957
AccI GTMKAC 2 cut(s) 241, 1183
AciI CCGC 4 cut(s) 168, 307, 905, 1445
AclWI GGATC 1 cut(s) 1668
AcoI YGGCCR 1 cut(s) 282
AcsI RAATTY 6 cut(s) 206, 362, 717, 772, 1144, 1393
AcyI GRCGYC 1 cut(s) 1013
AdeI CACNNNGTG 1 cut(s) 19
AfaI GTAC 3 cut(s) 390, 1326, 1377
AfiI CCNNNNNNNGG 6 cut(s) 441, 957, 1016, 1160, 1340, 1467
AgsI TTSAA 5 cut(s) 322, 400, 466, 598, 839
AhlI ACTAGT 1 cut(s) 689
AjnI CCWGG 3 cut(s) 15, 1015, 1683
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
Alw21I GWGCWC 1 cut(s) 1296
Alw26I GTCTC 8 cut(s) 36, 296, 520, 552, 745, 1349, 1481, 1787
Alw44I GTGCAC 1 cut(s) 1292
AlwI GGATC 1 cut(s) 1668
AoxI GGCC 3 cut(s) 51, 282, 978
ApaLI GTGCAC 1 cut(s) 1292
ApeKI GCWGC 3 cut(s) 170, 304, 1224
ApoI RAATTY 6 cut(s) 206, 362, 717, 772, 1144, 1393
AspLEI GCGC 1 cut(s) 1252
AspS9I GGNCC 1 cut(s) 1343
AsuC2I CCSGG 1 cut(s) 1050
AsuHPI GGTGA 2 cut(s) 95, 820
AsuNHI GCTAGC 1 cut(s) 1000
AvaII GGWCC 1 cut(s) 1343
BaeGI GKGCMC 1 cut(s) 1296
BauI CACGAG 1 cut(s) 286
Bbv12I GWGCWC 1 cut(s) 1296
BbvCI CCTCAGC 1 cut(s) 492
BbvI GCAGC 3 cut(s) 157, 316, 1211
BccI CCATC 5 cut(s) 605, 752, 1251, 1354, 1751
BceAI ACGGC 1 cut(s) 297
BciT130I CCWGG 3 cut(s) 17, 1017, 1685
BciVI GTATCC 1 cut(s) 1074
BcnI CCSGG 1 cut(s) 1050
BcoDI GTCTC 8 cut(s) 36, 296, 520, 552, 745, 1349, 1481, 1787
BcuI ACTAGT 1 cut(s) 689
BfaI CTAG 5 cut(s) 372, 627, 690, 1001, 1368
BfmI CTRYAG 3 cut(s) 171, 1225, 1727
BfuAI ACCTGC 2 cut(s) 1021, 1510
BfuI GTATCC 1 cut(s) 1074
BglII AGATCT 4 cut(s) 86, 329, 698, 1312
BisI GCNGC 4 cut(s) 171, 305, 308, 1225
BlsI GCNGC 4 cut(s) 172, 306, 309, 1226
BmcAI AGTACT 1 cut(s) 1326
Bme1390I CCNGG 4 cut(s) 17, 1017, 1050, 1685
Bme18I GGWCC 1 cut(s) 1343
BmgT120I GGNCC 1 cut(s) 1343
BmiI GGNNCC 1 cut(s) 1047
BmrFI CCNGG 4 cut(s) 17, 1017, 1050, 1685
BmsI GCATC 2 cut(s) 1684, 1693
BmtI GCTAGC 1 cut(s) 1004
BplI GAGNNNNNCTC 8 cut(s) 29, 61, 485, 517, 500, 532, 725, 757
BpmI CTGGAG 1 cut(s) 102
Bpu10I CCTNAGC 1 cut(s) 492
BpuEI CTTGAG 4 cut(s) 269, 858, 1349, 1450
BpuMI CCSGG 1 cut(s) 1050
Bsa29I ATCGAT 1 cut(s) 1626
BsaHI GRCGYC 1 cut(s) 1013
BsaI GGTCTC 2 cut(s) 552, 745
BsaJI CCNNGG 4 cut(s) 1118, 1156, 1683, 1740
BsaWI WCCGGW 2 cut(s) 271, 1507
BsaXI ACNNNNNCTCC 4 cut(s) 753, 783, 924, 954
Bsc4I CCNNNNNNNGG 6 cut(s) 441, 957, 1016, 1160, 1340, 1467
Bse1I ACTGG 2 cut(s) 1047, 1621
BseBI CCWGG 3 cut(s) 17, 1017, 1685
BseCI ATCGAT 1 cut(s) 1626
BseDI CCNNGG 4 cut(s) 1118, 1156, 1683, 1740
BseGI GGATG 4 cut(s) 490, 1148, 1756, 1777
BseLI CCNNNNNNNGG 6 cut(s) 441, 957, 1016, 1160, 1340, 1467
BseMII CTCAG 9 cut(s) 27, 60, 170, 483, 756, 1344, 1376, 1476, 1655
BseNI ACTGG 2 cut(s) 1047, 1621
BseRI GAGGAG 1 cut(s) 1729
BseSI GKGCMC 1 cut(s) 1296
BseXI GCAGC 3 cut(s) 157, 316, 1211
BseYI CCCAGC 1 cut(s) 440
BsgI GTGCAG 1 cut(s) 1044
Bsh1285I CGRYCG 1 cut(s) 1124
BshFI GGCC 3 cut(s) 53, 284, 980
BshVI ATCGAT 1 cut(s) 1626
BsiEI CGRYCG 1 cut(s) 1124
BsiHKAI GWGCWC 1 cut(s) 1296
BsiSI CCGG 4 cut(s) 148, 272, 1050, 1508
BslI CCNNNNNNNGG 6 cut(s) 441, 957, 1016, 1160, 1340, 1467
BsmAI GTCTC 8 cut(s) 36, 296, 520, 552, 745, 1349, 1481, 1787
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 3 cut(s) 53, 284, 980
Bso31I GGTCTC 2 cut(s) 552, 745
Bsp1286I GDGCHC 1 cut(s) 1296
Bsp143I GATC 6 cut(s) 86, 329, 632, 698, 1312, 1660
BspACI CCGC 4 cut(s) 168, 307, 905, 1445
BspANI GGCC 3 cut(s) 53, 284, 980
BspCNI CTCAG 9 cut(s) 28, 59, 169, 484, 755, 1345, 1375, 1477, 1656
BspDI ATCGAT 1 cut(s) 1626
BspLI GGNNCC 1 cut(s) 1047
BspMAI CTGCAG 3 cut(s) 175, 1229, 1731
BspMI ACCTGC 2 cut(s) 1021, 1510
BspOI GCTAGC 1 cut(s) 1004
BspPI GGATC 1 cut(s) 1668
BspTNI GGTCTC 2 cut(s) 552, 745
BsrI ACTGG 2 cut(s) 1047, 1621
BssECI CCNNGG 4 cut(s) 1118, 1156, 1683, 1740
BssMI GATC 6 cut(s) 86, 329, 632, 698, 1312, 1660
BssNI GRCGYC 1 cut(s) 1013
BssSI CACGAG 1 cut(s) 286
BssT1I CCWWGG 1 cut(s) 1156
Bst2BI CACGAG 1 cut(s) 286
Bst2UI CCWGG 3 cut(s) 17, 1017, 1685
Bst4CI ACNGT 2 cut(s) 263, 844
Bst6I CTCTTC 2 cut(s) 248, 911
BstACI GRCGYC 1 cut(s) 1013
BstAPI GCANNNNNTGC 2 cut(s) 1679, 1703
BstC8I GCNNGC 1 cut(s) 1002
BstF5I GGATG 4 cut(s) 490, 1148, 1756, 1777
BstHHI GCGC 1 cut(s) 1252
BstKTI GATC 6 cut(s) 89, 332, 635, 701, 1315, 1663
BstMAI GTCTC 8 cut(s) 36, 296, 520, 552, 745, 1349, 1481, 1787
BstMBI GATC 6 cut(s) 86, 329, 632, 698, 1312, 1660
BstMCI CGRYCG 1 cut(s) 1124
BstMWI GCNNNNNNNGC 5 cut(s) 1006, 1256, 1265, 1679, 1703
BstNI CCWGG 3 cut(s) 17, 1017, 1685
BstSCI CCNGG 4 cut(s) 15, 1015, 1048, 1683
BstSFI CTRYAG 3 cut(s) 171, 1225, 1727
BstSLI GKGCMC 1 cut(s) 1296
BstV1I GCAGC 3 cut(s) 157, 316, 1211
BstX2I RGATCY 5 cut(s) 86, 329, 698, 1312, 1660
BstYI RGATCY 5 cut(s) 86, 329, 698, 1312, 1660
Bsu15I ATCGAT 1 cut(s) 1626
BsuI GTATCC 1 cut(s) 1074
BsuRI GGCC 3 cut(s) 53, 284, 980
BsuTUI ATCGAT 1 cut(s) 1626
BtsCI GGATG 4 cut(s) 490, 1148, 1756, 1777
BtsIMutI CAGTG 3 cut(s) 54, 613, 1614
BveI ACCTGC 2 cut(s) 1021, 1510
Cac8I GCNNGC 1 cut(s) 1002
CfoI GCGC 1 cut(s) 1252
Cfr13I GGNCC 1 cut(s) 1343
ClaI ATCGAT 1 cut(s) 1626
CseI GACGC 1 cut(s) 1021
CsiI ACCWGGT 1 cut(s) 15
Csp6I GTAC 3 cut(s) 389, 1325, 1376
CviAII CATG 2 cut(s) 1220, 1541
CviQI GTAC 3 cut(s) 389, 1325, 1376
DpnI GATC 6 cut(s) 88, 331, 634, 700, 1314, 1662
DpnII GATC 6 cut(s) 86, 329, 632, 698, 1312, 1660
DraI TTTAAA 1 cut(s) 367
DraIII CACNNNGTG 1 cut(s) 19
EaeI YGGCCR 1 cut(s) 282
Eam1104I CTCTTC 2 cut(s) 248, 911
EarI CTCTTC 2 cut(s) 248, 911
Eco130I CCWWGG 1 cut(s) 1156
Eco31I GGTCTC 2 cut(s) 552, 745
Eco47I GGWCC 1 cut(s) 1343
EcoRI GAATTC 1 cut(s) 772
EcoRII CCWGG 3 cut(s) 15, 1015, 1683
EcoT14I CCWWGG 1 cut(s) 1156
ErhI CCWWGG 1 cut(s) 1156
FaeI CATG 2 cut(s) 1223, 1544
FatI CATG 2 cut(s) 1219, 1540
FauI CCCGC 1 cut(s) 1438
FblI GTMKAC 2 cut(s) 241, 1183
Fnu4HI GCNGC 4 cut(s) 171, 305, 308, 1225
FokI GGATG 4 cut(s) 497, 1135, 1763, 1784
Fsp4HI GCNGC 4 cut(s) 171, 305, 308, 1225
FspBI CTAG 5 cut(s) 372, 627, 690, 1001, 1368
FspI TGCGCA 1 cut(s) 1251
GlaI GCGC 1 cut(s) 1251
GluI GCNGC 4 cut(s) 171, 305, 308, 1225
GsaI CCCAGC 1 cut(s) 444
GsuI CTGGAG 1 cut(s) 102
HaeIII GGCC 3 cut(s) 53, 284, 980
HapII CCGG 4 cut(s) 148, 272, 1050, 1508
HgaI GACGC 1 cut(s) 1021
HhaI GCGC 1 cut(s) 1252
Hin1I GRCGYC 1 cut(s) 1013
Hin1II CATG 2 cut(s) 1223, 1544
Hin6I GCGC 1 cut(s) 1250
HinP1I GCGC 1 cut(s) 1250
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HindIII AAGCTT 1 cut(s) 228
HpaII CCGG 4 cut(s) 148, 272, 1050, 1508
HphI GGTGA 2 cut(s) 95, 820
Hpy166II GTNNAC 5 cut(s) 242, 667, 1184, 1232, 1294
Hpy8I GTNNAC 5 cut(s) 242, 667, 1184, 1232, 1294
Hpy99I CGWCG 1 cut(s) 1015
HpyAV CCTTC 5 cut(s) 207, 730, 848, 1389, 1427
HpyCH4III ACNGT 2 cut(s) 263, 844
HpyF10VI GCNNNNNNNGC 5 cut(s) 1006, 1256, 1265, 1679, 1703
Hsp92I GRCGYC 1 cut(s) 1013
Hsp92II CATG 2 cut(s) 1223, 1544
HspAI GCGC 1 cut(s) 1250
Kzo9I GATC 6 cut(s) 86, 329, 632, 698, 1312, 1660
LmnI GCTCC 3 cut(s) 274, 592, 761
Lsp1109I GCAGC 3 cut(s) 157, 316, 1211
LweI GCATC 2 cut(s) 1684, 1693
MabI ACCWGGT 1 cut(s) 15
MaeI CTAG 5 cut(s) 372, 627, 690, 1001, 1368
MaeIII GTNAC 2 cut(s) 257, 1475
MalI GATC 6 cut(s) 88, 331, 634, 700, 1314, 1662
MboI GATC 6 cut(s) 86, 329, 632, 698, 1312, 1660
MboII GAAGA 9 cut(s) 92, 96, 265, 430, 627, 928, 947, 1793, 1799
MfeI CAATTG 1 cut(s) 1559
MflI RGATCY 5 cut(s) 86, 329, 698, 1312, 1660
MhlI GDGCHC 1 cut(s) 1296
MlyI GAGTC 7 cut(s) 38, 298, 522, 616, 1211, 1651, 1754
MmeI TCCRAC 4 cut(s) 321, 938, 1412, 1728
MseI TTAA 3 cut(s) 366, 1191, 1514
MspA1I CMGCKG 2 cut(s) 170, 307
MspI CCGG 4 cut(s) 148, 272, 1050, 1508
MspR9I CCNGG 4 cut(s) 17, 1017, 1050, 1685
MunI CAATTG 1 cut(s) 1559
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 3 cut(s) 17, 1017, 1685
MwoI GCNNNNNNNGC 5 cut(s) 1006, 1256, 1265, 1679, 1703
NciI CCSGG 1 cut(s) 1050
NdeII GATC 6 cut(s) 86, 329, 632, 698, 1312, 1660
NheI GCTAGC 1 cut(s) 1000
NlaIII CATG 2 cut(s) 1223, 1544
NlaIV GGNNCC 1 cut(s) 1047
NsbI TGCGCA 1 cut(s) 1251
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PctI GAATGC 1 cut(s) 13
PfeI GAWTC 8 cut(s) 176, 400, 452, 466, 497, 533, 1413, 1623
PflMI CCANNNNNTGG 1 cut(s) 957
PfoI TCCNGGA 1 cut(s) 1048
PkrI GCNGC 4 cut(s) 172, 306, 309, 1226
PleI GAGTC 7 cut(s) 38, 297, 521, 616, 1210, 1650, 1753
PpsI GAGTC 7 cut(s) 38, 297, 521, 616, 1210, 1650, 1753
Psp6I CCWGG 3 cut(s) 15, 1015, 1683
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 3 cut(s) 15, 1015, 1683
PspN4I GGNNCC 1 cut(s) 1047
PspPI GGNCC 1 cut(s) 1343
PsrI GAACNNNNNNTAC 2 cut(s) 805, 837
PstI CTGCAG 3 cut(s) 175, 1229, 1731
PsuI RGATCY 5 cut(s) 86, 329, 698, 1312, 1660
RsaI GTAC 3 cut(s) 390, 1326, 1377
RsaNI GTAC 3 cut(s) 389, 1325, 1376
SaqAI TTAA 3 cut(s) 366, 1191, 1514
SatI GCNGC 4 cut(s) 171, 305, 308, 1225
Sau3AI GATC 6 cut(s) 86, 329, 632, 698, 1312, 1660
Sau96I GGNCC 1 cut(s) 1343
ScaI AGTACT 1 cut(s) 1326
SchI GAGTC 7 cut(s) 38, 298, 522, 616, 1211, 1651, 1754
ScrFI CCNGG 4 cut(s) 17, 1017, 1050, 1685
SduI GDGCHC 1 cut(s) 1296
SexAI ACCWGGT 1 cut(s) 15
SfaNI GCATC 2 cut(s) 1684, 1693
SfcI CTRYAG 3 cut(s) 171, 1225, 1727
SinI GGWCC 1 cut(s) 1343
SmiI ATTTAAAT 1 cut(s) 367
SmlI CTYRAG 4 cut(s) 248, 873, 1328, 1465
SmoI CTYRAG 4 cut(s) 248, 873, 1328, 1465
SpeI ACTAGT 1 cut(s) 689
SsiI CCGC 4 cut(s) 168, 307, 905, 1445
SspMI CTAG 5 cut(s) 372, 627, 690, 1001, 1368
StyD4I CCNGG 4 cut(s) 15, 1015, 1048, 1683
StyI CCWWGG 1 cut(s) 1156
SwaI ATTTAAAT 1 cut(s) 367
TaaI ACNGT 2 cut(s) 263, 844
TaqI TCGA 7 cut(s) 407, 416, 446, 566, 638, 1124, 1626
TaqII GACCGA 1 cut(s) 1110
TatI WGTACW 1 cut(s) 1324
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 8 cut(s) 176, 400, 452, 466, 497, 533, 1413, 1623
Tru1I TTAA 3 cut(s) 366, 1191, 1514
Tru9I TTAA 3 cut(s) 366, 1191, 1514
TscAI CASTG 3 cut(s) 54, 613, 1621
TseI GCWGC 3 cut(s) 170, 304, 1224
TspDTI ATGAA 4 cut(s) 501, 1137, 1644, 1800
TspRI CASTG 3 cut(s) 54, 613, 1621
Van91I CCANNNNNTGG 1 cut(s) 957
VneI GTGCAC 1 cut(s) 1292
VpaK11BI GGWCC 1 cut(s) 1343
XapI RAATTY 6 cut(s) 206, 362, 717, 772, 1144, 1393
XbaI TCTAGA 1 cut(s) 371
XcmI CCANNNNNNNNNTGG 1 cut(s) 721
XmiI GTMKAC 2 cut(s) 241, 1183
XspI CTAG 5 cut(s) 372, 627, 690, 1001, 1368
ZrmI AGTACT 1 cut(s) 1326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.