MD01G1045600.v1.1
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0010457
Physical Location & Seq
Reverse (-)
14585508 .. 14591280
5773 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1045600.v1.1.491

Sequence Viewer

Length: 1611 bp
ATGAAAAGAAAGCCCCACCAAGTGTTTGCGAAAATGCCCGTGAGAGCCTCCGTAGTCAAGACAGCACAACAGAGCACAACTGTCCGAAGATCTCCAAGATTTCTCCAACCCCAGAAAACTCAAGAAGCAGAGCCGTCCACAGCGATTCTCTGGAAATGTCAGAGACTTGTCCGCCCGGAAAAGAGCGCTGCGGAGTCTGAAAATCCGAAAACCCCCAAACCCACAGCCAGAAGCAACCGTGTCGTACGTCCTTCGAGTCTCCCACTCAGCTCTAAGAAATCGAGTGAATCCTACGATGGGTTGAGGAGATCTCCGAGATTGAACAATGGGGTTGAGGGGTTTCAGAGTCTTAGACGTTCTTCAAGGATTTTGAACAAGCAGCTCGTCCTCGTCCATGAAGGTAAGGGTCCCCCAAAGAAAATCTCGAAGAAATTGGGCGAATTGGAAAATGGGACGGCTAATTGCGGAAATTTGAGTTCTGGGTCAGAAAAATGTCGAAGAAAATCTGTCAGGTTGTGTATTGAGCAATCTGTTGTGGATCAATGCACTGATAAGGCAACTGGTTCTCGATCTAAGAGTGGAAACAACAGGTCGTTGAAGAAAGATGAGTTCTCAAGTGTTGGAAAAGATGGAGCTCGTATTGATTCATCAAAAAGAGTTCTGAAAAAGTGCAAAATGCAAGAGATAGACGGTGGAAATAAAGAAGCGACGGTTAGGAGGAAGAGAAAGAGGGAGGAGGAAGGGGGGAAGAGGGAGGAAGAAGGTGTTGGGGTTGTTCAAGGGTGGACAAAGGAACAAGAACTGGTATTGCAAAGAGCTTATTTGATAGCGAAGCCAACACCCCTCTTCTGGAAGAAGGTTTCTAAACTGGTGCCTGGAAAATCTGCACAGGAGTGCTTTGATAGAGTCCACTCTGAGCATAGAACTCCACCTCAACCTCGTACCCGGTCGAAGGCAAACACATTAACAAATTTGTCTCCCTTTGGACAGTTTTCACTCTCTGCAAGTAAACTGCTTAAACCCACTGAGCCAAAGTCTAAAAGGCCAGCTTGCAGTAAACAGAGGAGTCATCTTGCCCAGAAAACTGTCCGAAAGTTGTTACAAAAACATCAGCAAGTGTACCAAGATTACGAGGGAGATCTATTTTCAGTGCTTGAGCCCAGTCTAGGTTCATCTACCGAGAGTCAAGCGAGTGTTATACCTTCTACCCCAAAGAATTTACAGGTAAAAAAGGGAATTCTTCAAAACCGTAGTCAAAGATCTTCAGGTCATAAGAAGCTGCTGTCGAGATTTAGTAGCTCATGTGGCAGACCTCTCGTTAGCCCCCTGGTACTGAAGCAGGTCCGAAACAAGGTCTGGCATGAGAAATATATTGATCAATTACATACCAGGGAAGCAAAGAGAAAAGCTGCATCTACATGCACTCAACAATCCACTTCTGGAATTGATGAAGTGGATGTGGTAAGAACTGCAAAAATTGCCCTGGTTTCTGATGCAAGAGATGCTATCAATAAACTCCAACATCTGCAGGCCAATGTCGCCGGCGACTCTTCTGATTTCGACGATGATAGCATTGTAAGTGATGATGAGGAAGGTGAAGATGATACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

537

Amino Acids

59.77

Weight (kDa)

10.06

Isoelectric Point (pI)

67.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53440 AT3G53440
fragaria_vesca FvH4_1g18920
malus_domestica MD01G1045600.v1.1 MD15G1306300.v1.1
prunus_persica Prupe.6G210300_v2.0.a1
pyrus_communis pycom01g07170 pycom15g27060 pycom15g27070
rosa_chinensis RchiOBHm_Chr2g0109931
rosa_laevigata RLG00000017770 RLG00000036544
rosa_multiflora Rmu_sc0005173.1_g000019
rosa_roxburghii Rroxscaffold_2G00133870
rosa_rugosa Rorug02G0163900
rosa_samantha Rh2AG215900 Rh2BG225900 Rh2CG218100 Rh2DG221400 Rh5DG403700
rosa_wichuraiana Rw2G016670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1330
AccB1I GGYRCC 1 cut(s) 871
AciI CCGC 3 cut(s) 172, 191, 465
AclWI GGATC 1 cut(s) 546
AcsI RAATTY 4 cut(s) 469, 970, 1216, 1236
AcuI CTGAAG 2 cut(s) 1248, 1355
AdeI CACNNNGTG 1 cut(s) 22
AfaI GTAC 4 cut(s) 246, 943, 1121, 1332
AfeI AGCGCT 1 cut(s) 187
AfiI CCNNNNNNNGG 5 cut(s) 297, 849, 952, 1166, 1351
AgsI TTSAA 6 cut(s) 322, 363, 373, 598, 779, 1244
AjnI CCWGG 4 cut(s) 874, 1326, 1388, 1482
AjuI GAANNNNNNNTTGG 2 cut(s) 750, 782
AleI CACNNNNGTG 1 cut(s) 892
AluBI AGCT 8 cut(s) 270, 382, 635, 818, 1049, 1279, 1299, 1409
AluI AGCT 8 cut(s) 270, 382, 635, 818, 1049, 1279, 1299, 1409
Alw21I GWGCWC 2 cut(s) 77, 637
Alw26I GTCTC 3 cut(s) 157, 263, 981
AlwI GGATC 1 cut(s) 546
Aor51HI AGCGCT 1 cut(s) 187
AoxI GGCC 2 cut(s) 1043, 1530
ApeKI GCWGC 4 cut(s) 188, 379, 1279, 1409
ApoI RAATTY 4 cut(s) 469, 970, 1216, 1236
ArsI GACNNNNNNTTYG 2 cut(s) 1237, 1269
AspLEI GCGC 1 cut(s) 188
AspS9I GGNCC 2 cut(s) 407, 1342
AsuC2I CCSGG 2 cut(s) 176, 946
AsuHPI GGTGA 1 cut(s) 1607
AvaII GGWCC 2 cut(s) 407, 1342
BanI GGYRCC 1 cut(s) 871
BanII GRGCYC 2 cut(s) 637, 1161
Bbv12I GWGCWC 2 cut(s) 77, 637
BbvI GCAGC 4 cut(s) 175, 391, 1266, 1396
BccI CCATC 2 cut(s) 290, 623
BceAI ACGGC 2 cut(s) 118, 471
BcgI CGANNNNNNTGC 4 cut(s) 223, 257, 1297, 1331
BciT130I CCWGG 4 cut(s) 876, 1328, 1390, 1484
BclI TGATCA 1 cut(s) 1375
BcnI CCSGG 2 cut(s) 176, 946
BcoDI GTCTC 3 cut(s) 157, 263, 981
BfaI CTAG 1 cut(s) 1166
BfmI CTRYAG 1 cut(s) 1526
BfoI RGCGCY 1 cut(s) 189
BfuAI ACCTGC 1 cut(s) 1330
BglII AGATCT 4 cut(s) 89, 308, 1138, 1259
BisI GCNGC 4 cut(s) 189, 380, 1280, 1410
BlsI GCNGC 4 cut(s) 190, 381, 1281, 1411
Bme1390I CCNGG 6 cut(s) 176, 876, 946, 1328, 1390, 1484
Bme18I GGWCC 2 cut(s) 407, 1342
BmgT120I GGNCC 2 cut(s) 407, 1342
BmiI GGNNCC 3 cut(s) 408, 409, 873
BmrFI CCNGG 6 cut(s) 176, 876, 946, 1328, 1390, 1484
BmrI ACTGGG 1 cut(s) 1155
BmsI GCATC 3 cut(s) 1421, 1483, 1492
BmuI ACTGGG 1 cut(s) 1155
BplI GAGNNNNNCTC 2 cut(s) 295, 327
BpuEI CTTGAG 3 cut(s) 105, 598, 1175
BpuMI CCSGG 2 cut(s) 176, 946
BsaJI CCNNGG 3 cut(s) 1326, 1389, 1482
Bsc4I CCNNNNNNNGG 5 cut(s) 297, 849, 952, 1166, 1351
Bse118I RCCGGY 1 cut(s) 1541
Bse1I ACTGG 4 cut(s) 565, 807, 873, 1161
BseBI CCWGG 4 cut(s) 876, 1328, 1390, 1484
BseDI CCNNGG 3 cut(s) 1326, 1389, 1482
BseGI GGATG 1 cut(s) 1462
BseLI CCNNNNNNNGG 5 cut(s) 297, 849, 952, 1166, 1351
BseMII CTCAG 3 cut(s) 280, 906, 1017
BseNI ACTGG 4 cut(s) 565, 807, 873, 1161
BseRI GAGGAG 3 cut(s) 319, 749, 1078
BseXI GCAGC 4 cut(s) 175, 391, 1266, 1396
BsgI GTGCAG 1 cut(s) 870
Bsh1285I CGRYCG 1 cut(s) 950
BshFI GGCC 2 cut(s) 1045, 1532
BshNI GGYRCC 1 cut(s) 871
BsiEI CGRYCG 1 cut(s) 950
BsiHKAI GWGCWC 2 cut(s) 77, 637
BsiSI CCGG 3 cut(s) 176, 946, 1542
BsiWI CGTACG 1 cut(s) 244
BslFI GGGAC 2 cut(s) 393, 466
BslI CCNNNNNNNGG 5 cut(s) 297, 849, 952, 1166, 1351
BsmAI GTCTC 3 cut(s) 157, 263, 981
BsmFI GGGAC 2 cut(s) 393, 466
BsnI GGCC 2 cut(s) 1045, 1532
Bsp1286I GDGCHC 3 cut(s) 77, 637, 1161
Bsp143I GATC 7 cut(s) 89, 308, 538, 569, 1138, 1259, 1375
BspACI CCGC 3 cut(s) 172, 191, 465
BspANI GGCC 2 cut(s) 1045, 1532
BspCNI CTCAG 3 cut(s) 279, 907, 1018
BspLI GGNNCC 3 cut(s) 408, 409, 873
BspMAI CTGCAG 1 cut(s) 1530
BspMI ACCTGC 1 cut(s) 1330
BspPI GGATC 1 cut(s) 546
BspT107I GGYRCC 1 cut(s) 871
BsrFI RCCGGY 1 cut(s) 1541
BsrI ACTGG 4 cut(s) 565, 807, 873, 1161
BssAI RCCGGY 1 cut(s) 1541
BssECI CCNNGG 3 cut(s) 1326, 1389, 1482
BssMI GATC 7 cut(s) 89, 308, 538, 569, 1138, 1259, 1375
Bst2UI CCWGG 4 cut(s) 876, 1328, 1390, 1484
Bst4CI ACNGT 7 cut(s) 82, 239, 692, 712, 990, 1087, 1250
Bst6I CTCTTC 4 cut(s) 716, 743, 851, 1555
BstAPI GCANNNNNTGC 2 cut(s) 1478, 1502
BstC8I GCNNGC 4 cut(s) 1047, 1051, 1530, 1543
BstDEI CTNAG 7 cut(s) 266, 273, 350, 573, 915, 1026, 1608
BstF5I GGATG 1 cut(s) 1462
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 7 cut(s) 92, 311, 541, 572, 1141, 1262, 1378
BstMAI GTCTC 3 cut(s) 157, 263, 981
BstMBI GATC 7 cut(s) 89, 308, 538, 569, 1138, 1259, 1375
BstMCI CGRYCG 1 cut(s) 950
BstMWI GCNNNNNNNGC 4 cut(s) 1305, 1478, 1502, 1538
BstNI CCWGG 4 cut(s) 876, 1328, 1390, 1484
BstNSI RCATGY 1 cut(s) 1422
BstSCI CCNGG 6 cut(s) 174, 874, 944, 1326, 1388, 1482
BstSFI CTRYAG 1 cut(s) 1526
BstV1I GCAGC 4 cut(s) 175, 391, 1266, 1396
BstX2I RGATCY 4 cut(s) 89, 308, 1138, 1259
BstYI RGATCY 4 cut(s) 89, 308, 1138, 1259
BsuRI GGCC 2 cut(s) 1045, 1532
BtsCI GGATG 1 cut(s) 1462
BtsIMutI CAGTG 3 cut(s) 546, 1023, 1155
BveI ACCTGC 1 cut(s) 1330
Cac8I GCNNGC 4 cut(s) 1047, 1051, 1530, 1543
CfoI GCGC 1 cut(s) 188
Cfr10I RCCGGY 1 cut(s) 1541
Cfr13I GGNCC 2 cut(s) 407, 1342
Csp6I GTAC 4 cut(s) 245, 942, 1120, 1331
CviAII CATG 4 cut(s) 395, 1302, 1361, 1419
CviQI GTAC 4 cut(s) 245, 942, 1120, 1331
DdeI CTNAG 7 cut(s) 266, 273, 350, 573, 915, 1026, 1608
DpnI GATC 7 cut(s) 91, 310, 540, 571, 1140, 1261, 1377
DpnII GATC 7 cut(s) 89, 308, 538, 569, 1138, 1259, 1375
DraIII CACNNNGTG 1 cut(s) 22
Eam1104I CTCTTC 4 cut(s) 716, 743, 851, 1555
EarI CTCTTC 4 cut(s) 716, 743, 851, 1555
EciI GGCGGA 1 cut(s) 161
Ecl136II GAGCTC 1 cut(s) 635
Eco24I GRGCYC 2 cut(s) 637, 1161
Eco47I GGWCC 2 cut(s) 407, 1342
Eco47III AGCGCT 1 cut(s) 187
Eco53kI GAGCTC 1 cut(s) 635
Eco57I CTGAAG 2 cut(s) 1248, 1355
EcoICRI GAGCTC 1 cut(s) 635
EcoO109I RGGNCCY 1 cut(s) 407
EcoRI GAATTC 1 cut(s) 1236
EcoRII CCWGG 4 cut(s) 874, 1326, 1388, 1482
EcoT38I GRGCYC 2 cut(s) 637, 1161
FaeI CATG 4 cut(s) 398, 1305, 1364, 1422
FaiI YATR 9 cut(s) 396, 921, 1199, 1272, 1303, 1362, 1371, 1386, 1420
FalI AAGNNNNNCTT 2 cut(s) 1033, 1065
FaqI GGGAC 2 cut(s) 393, 466
FatI CATG 4 cut(s) 394, 1301, 1360, 1418
FbaI TGATCA 1 cut(s) 1375
Fnu4HI GCNGC 4 cut(s) 189, 380, 1280, 1410
FokI GGATG 1 cut(s) 1469
FriOI GRGCYC 2 cut(s) 637, 1161
Fsp4HI GCNGC 4 cut(s) 189, 380, 1280, 1410
FspBI CTAG 1 cut(s) 1166
GlaI GCGC 1 cut(s) 187
GluI GCNGC 4 cut(s) 189, 380, 1280, 1410
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 2 cut(s) 1045, 1532
HapII CCGG 3 cut(s) 176, 946, 1542
HhaI GCGC 1 cut(s) 188
Hin1II CATG 4 cut(s) 398, 1305, 1364, 1422
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HpaII CCGG 3 cut(s) 176, 946, 1542
HphI GGTGA 1 cut(s) 1607
Hpy166II GTNNAC 6 cut(s) 138, 786, 910, 1010, 1058, 1120
Hpy188III TCNNGA 8 cut(s) 58, 122, 151, 424, 567, 850, 1287, 1440
Hpy8I GTNNAC 6 cut(s) 138, 786, 910, 1010, 1058, 1120
Hpy99I CGWCG 2 cut(s) 712, 1565
HpyAV CCTTC 8 cut(s) 261, 392, 734, 755, 850, 946, 1212, 1586
HpyCH4III ACNGT 7 cut(s) 82, 239, 692, 712, 990, 1087, 1250
HpyCH4IV ACGT 2 cut(s) 247, 355
HpyF10VI GCNNNNNNNGC 4 cut(s) 1305, 1478, 1502, 1538
HpyF3I CTNAG 7 cut(s) 266, 273, 350, 573, 915, 1026, 1608
HpySE526I ACGT 2 cut(s) 247, 355
Hsp92II CATG 4 cut(s) 398, 1305, 1364, 1422
HspAI GCGC 1 cut(s) 186
KflI GGGWCCC 1 cut(s) 407
KroI GCCGGC 1 cut(s) 1541
KroNI GCCGGC 1 cut(s) 1543
Ksp22I TGATCA 1 cut(s) 1375
Kzo9I GATC 7 cut(s) 89, 308, 538, 569, 1138, 1259, 1375
LmnI GCTCC 1 cut(s) 632
Lsp1109I GCAGC 4 cut(s) 175, 391, 1266, 1396
LweI GCATC 3 cut(s) 1421, 1483, 1492
MaeI CTAG 1 cut(s) 1166
MaeII ACGT 2 cut(s) 247, 355
MaeIII GTNAC 1 cut(s) 1098
MalI GATC 7 cut(s) 91, 310, 540, 571, 1140, 1261, 1377
MboI GATC 7 cut(s) 89, 308, 538, 569, 1138, 1259, 1375
MflI RGATCY 4 cut(s) 89, 308, 1138, 1259
MhlI GDGCHC 3 cut(s) 77, 637, 1161
MlyI GAGTC 7 cut(s) 203, 265, 355, 915, 1075, 1192, 1541
MmeI TCCRAC 3 cut(s) 130, 601, 1543
MreI CGCCGGCG 1 cut(s) 1541
MroNI GCCGGC 1 cut(s) 1541
MseI TTAA 2 cut(s) 965, 1017
MslI CAYNNNNRTG 2 cut(s) 892, 1417
MspI CCGG 3 cut(s) 176, 946, 1542
MspR9I CCNGG 6 cut(s) 176, 876, 946, 1328, 1390, 1484
MvaI CCWGG 4 cut(s) 876, 1328, 1390, 1484
MwoI GCNNNNNNNGC 4 cut(s) 1305, 1478, 1502, 1538
NaeI GCCGGC 1 cut(s) 1543
NciI CCSGG 2 cut(s) 176, 946
NdeII GATC 7 cut(s) 89, 308, 538, 569, 1138, 1259, 1375
NgoMIV GCCGGC 1 cut(s) 1541
NlaIII CATG 4 cut(s) 398, 1305, 1364, 1422
NlaIV GGNNCC 3 cut(s) 408, 409, 873
NspI RCATGY 1 cut(s) 1422
OliI CACNNNNGTG 1 cut(s) 892
PdiI GCCGGC 1 cut(s) 1543
PfeI GAWTC 3 cut(s) 145, 287, 644
Pfl23II CGTACG 1 cut(s) 244
PkrI GCNGC 4 cut(s) 190, 381, 1281, 1411
PleI GAGTC 7 cut(s) 202, 264, 354, 914, 1074, 1191, 1541
PpsI GAGTC 7 cut(s) 202, 264, 354, 914, 1074, 1191, 1541
PpuMI RGGWCCY 1 cut(s) 407
Psp124BI GAGCTC 1 cut(s) 637
Psp5II RGGWCCY 1 cut(s) 407
Psp6I CCWGG 4 cut(s) 874, 1326, 1388, 1482
PspGI CCWGG 4 cut(s) 874, 1326, 1388, 1482
PspLI CGTACG 1 cut(s) 244
PspN4I GGNNCC 3 cut(s) 408, 409, 873
PspPI GGNCC 2 cut(s) 407, 1342
PspPPI RGGWCCY 1 cut(s) 407
PstI CTGCAG 1 cut(s) 1530
PsuI RGATCY 4 cut(s) 89, 308, 1138, 1259
RsaI GTAC 4 cut(s) 246, 943, 1121, 1332
RsaNI GTAC 4 cut(s) 245, 942, 1120, 1331
RseI CAYNNNNRTG 2 cut(s) 892, 1417
SacI GAGCTC 1 cut(s) 637
SaqAI TTAA 2 cut(s) 965, 1017
SatI GCNGC 4 cut(s) 189, 380, 1280, 1410
Sau3AI GATC 7 cut(s) 89, 308, 538, 569, 1138, 1259, 1375
Sau96I GGNCC 2 cut(s) 407, 1342
SchI GAGTC 7 cut(s) 203, 265, 355, 915, 1075, 1192, 1541
ScrFI CCNGG 6 cut(s) 176, 876, 946, 1328, 1390, 1484
SduI GDGCHC 3 cut(s) 77, 637, 1161
SfaNI GCATC 3 cut(s) 1421, 1483, 1492
SfcI CTRYAG 1 cut(s) 1526
SgrAI CRCCGGYG 1 cut(s) 1541
SinI GGWCC 2 cut(s) 407, 1342
SmiMI CAYNNNNRTG 2 cut(s) 892, 1417
SmlI CTYRAG 3 cut(s) 120, 613, 1154
SmoI CTYRAG 3 cut(s) 120, 613, 1154
SsiI CCGC 3 cut(s) 172, 191, 465
SspMI CTAG 1 cut(s) 1166
SstI GAGCTC 1 cut(s) 637
StyD4I CCNGG 6 cut(s) 174, 874, 944, 1326, 1388, 1482
TaaI ACNGT 7 cut(s) 82, 239, 692, 712, 990, 1087, 1250
TaiI ACGT 2 cut(s) 250, 358
TaqI TCGA 8 cut(s) 254, 281, 425, 496, 568, 950, 1286, 1560
TfiI GAWTC 3 cut(s) 145, 287, 644
Tru1I TTAA 2 cut(s) 965, 1017
Tru9I TTAA 2 cut(s) 965, 1017
TscAI CASTG 3 cut(s) 553, 1030, 1155
TseI GCWGC 4 cut(s) 188, 379, 1279, 1409
TspDTI ATGAA 5 cut(s) 17, 411, 636, 1161, 1464
TspGWI ACGGA 1 cut(s) 40
TspRI CASTG 3 cut(s) 553, 1030, 1155
VpaK11BI GGWCC 2 cut(s) 407, 1342
XapI RAATTY 4 cut(s) 469, 970, 1216, 1236
XceI RCATGY 1 cut(s) 1422
XspI CTAG 1 cut(s) 1166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.