Rmu_sc0005173.1_g000019
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005173.1
OG0010457
Physical Location & Seq
Forward (+)
95769 .. 99385
3617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005173.1_g000019.1.cds

Sequence Viewer

Length: 2016 bp
atgcctgagagagactcagtggcctccacaccccaacaatcctcaattctgcgaagatctcccagatttcttcaccccaagaccactccagaaccacagaaactcgccacacctcgccggaagcctcagagaaagaccgctgcagaatccgaaaacccgaaaacccccaaatccaaattcagaaggaacggggcaaaagctttggattgtggacttcttgagaagagtaacagtccagaaccggagcaaacggccacgattctccgaaagtcgcagcggcttgtggaattgaaagagagatctgggcggttggaaaaccctaaaacccccaaatttaaatctagaagcgacaatgtggcacgctctttgaatctttcgattggctcgaagaaattgagtaaagccaatgctgggtcgagagaatctaaggttttgaatcaggaggtggtcgtggatgaagatgaggattcctccccagagagagtctcaaagaaattgggggaatctcattatgggtcaagaaaagctccaagattgaacaatgtcagtgatgggtttcagactcctagacgatcttcgaggttgggtggtaagcagaatgtggttgacaaacagactgataaggcagctagtggtagatctaagagtaagtccaaaatttctttggataaagagaaggtctcaggtgttcggaaagatggagcttgtgtggtggatgaagatgaggattcctccccagagagagtctcaaagaaattgggggaatctcattatgggtcgagttctgggtcaagaaaagctccaagattgaacaatgtcagtgatgggtttcagacgcctagacgatcttcgaggttgggtggtaagcagaatgtggttgacaaacagactgataaggcaactagtggtagatctaagagtaagtccaaaatttctttggataaagagaaggtctcaggtgttcggaaagatggagcttgtgtgaattcaggcgaaattgttttggaaaagagcaaaagggtgagtaagaaaagttcagtcggtggtgttgaaacagttagtgaggaaggtggagagggcaaagctcaagagttagattgcagagataaaaaagttgcggttaggaggaagagaaagagaggtggagaagatgtcaaggtcgccaaagggtggacaaaggaacaagaattggccttgcagagagcgtatttgctagcaaagccgacccctggtttctggaagcaggtttctaaactggttcccggaaagtctgcacaggattgctttgataggatacattctgaccatataaccccaccccaacctcgtcctcggtcgagggcaaagattactacaaattcatccccccttggaggcttttcactctctgcaagtagactgcttaatcctgttgagtcaaaggctaaaggacatggctgcaataaacagagaagccatcttgcgcagaaagctgtcagagcattattacacaagcattatcaagtgcaccaagagtttgaggcagatctattttcagtacttgagccaagtgtaggtccgtctactgagacttctcagcctagtgttataccttctactccaacaaattcacaggtaaagcagggattccttcacaagagcagtcaaatatcatctgcgggtcataagaagcccctctcaaggtttagtaactcatctgagacatctcttgttagtcctccggtattaaagcaggtcaagaacaaggtcttgcatgagaaatatattgaccaattgcatctcagggaagctaagagaaaaacattagctaaaaacactaaaaaatccactggtggaatcgatgaaacacaaaagagtcatattcaggaagtggatctgagaactgcaaaaattgccctggtttctgatgcaagagatgctatcaataagctcaaacatctgcaggaaaactcttcggagtcggatgatgatggaattgcaagggatgatgaggaagatgaagatgagactttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

671

Amino Acids

73.87

Weight (kDa)

9.94

Isoelectric Point (pI)

56.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53440 AT3G53440
fragaria_vesca FvH4_1g18920
malus_domestica MD01G1045600.v1.1 MD15G1306300.v1.1
prunus_persica Prupe.6G210300_v2.0.a1
pyrus_communis pycom01g07170 pycom15g27060 pycom15g27070
rosa_chinensis RchiOBHm_Chr2g0109931
rosa_laevigata RLG00000017770 RLG00000036544
rosa_multiflora Rmu_sc0005173.1_g000019
rosa_roxburghii Rroxscaffold_2G00133870
rosa_rugosa Rorug02G0163900
rosa_samantha Rh2AG215900 Rh2BG225900 Rh2CG218100 Rh2DG221400 Rh5DG403700
rosa_wichuraiana Rw2G016670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1464
Acc36I ACCTGC 2 cut(s) 1234, 1723
AccB7I CCANNNNNTGG 1 cut(s) 1170
AccI GTMKAC 2 cut(s) 1396, 1562
AciI CCGC 5 cut(s) 138, 277, 307, 1118, 1658
AclWI GGATC 1 cut(s) 1881
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 7 cut(s) 176, 332, 657, 930, 985, 1357, 1606
AcyI GRCGYC 1 cut(s) 836
AfaI GTAC 1 cut(s) 1539
AfiI CCNNNNNNNGG 6 cut(s) 411, 1170, 1229, 1373, 1553, 1680
AgsI TTSAA 6 cut(s) 292, 370, 436, 538, 811, 1052
AhlI ACTAGT 1 cut(s) 902
AjnI CCWGG 2 cut(s) 1228, 1896
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
Alw21I GWGCWC 1 cut(s) 1509
Alw26I GTCTC 8 cut(s) 6, 490, 685, 751, 958, 1562, 1694, 2000
Alw44I GTGCAC 1 cut(s) 1505
AlwI GGATC 1 cut(s) 1881
AoxI GGCC 3 cut(s) 21, 252, 1191
ApaLI GTGCAC 1 cut(s) 1505
ApeKI GCWGC 4 cut(s) 140, 274, 626, 1437
ApoI RAATTY 7 cut(s) 176, 332, 657, 930, 985, 1357, 1606
AspLEI GCGC 1 cut(s) 1465
AspS9I GGNCC 1 cut(s) 1556
AsuC2I CCSGG 1 cut(s) 1263
AsuHPI GGTGA 2 cut(s) 65, 1033
AsuNHI GCTAGC 1 cut(s) 1213
AvaII GGWCC 1 cut(s) 1556
BaeGI GKGCMC 1 cut(s) 1509
Bbv12I GWGCWC 1 cut(s) 1509
BbvI GCAGC 4 cut(s) 127, 286, 638, 1424
BccI CCATC 6 cut(s) 545, 692, 818, 965, 1464, 1964
BceAI ACGGC 1 cut(s) 267
BciT130I CCWGG 2 cut(s) 1230, 1898
BciVI GTATCC 1 cut(s) 1287
BcnI CCSGG 1 cut(s) 1263
BcoDI GTCTC 8 cut(s) 6, 490, 685, 751, 958, 1562, 1694, 2000
BcuI ACTAGT 1 cut(s) 902
BfaI CTAG 7 cut(s) 342, 567, 630, 840, 903, 1214, 1581
BfmI CTRYAG 2 cut(s) 141, 1940
BfuAI ACCTGC 2 cut(s) 1234, 1723
BfuI GTATCC 1 cut(s) 1287
BglII AGATCT 5 cut(s) 56, 299, 638, 911, 1525
BisI GCNGC 5 cut(s) 141, 275, 278, 627, 1438
BlsI GCNGC 5 cut(s) 142, 276, 279, 628, 1439
BmcAI AGTACT 1 cut(s) 1539
Bme1390I CCNGG 3 cut(s) 1230, 1263, 1898
Bme18I GGWCC 1 cut(s) 1556
BmgT120I GGNCC 1 cut(s) 1556
BmiI GGNNCC 1 cut(s) 1260
BmrFI CCNGG 3 cut(s) 1230, 1263, 1898
BmsI GCATC 3 cut(s) 1786, 1897, 1906
BmtI GCTAGC 1 cut(s) 1217
BpmI CTGGAG 1 cut(s) 72
BpuEI CTTGAG 4 cut(s) 239, 1071, 1562, 1663
BpuMI CCSGG 1 cut(s) 1263
Bsa29I ATCGAT 1 cut(s) 1839
BsaHI GRCGYC 1 cut(s) 836
BsaI GGTCTC 2 cut(s) 685, 958
BsaJI CCNNGG 4 cut(s) 1228, 1331, 1369, 1896
BsaWI WCCGGW 2 cut(s) 241, 1720
BsaXI ACNNNNNCTCC 6 cut(s) 693, 723, 966, 996, 1137, 1167
Bsc4I CCNNNNNNNGG 6 cut(s) 411, 1170, 1229, 1373, 1553, 1680
Bse1I ACTGG 2 cut(s) 1260, 1834
BseBI CCWGG 2 cut(s) 1230, 1898
BseCI ATCGAT 1 cut(s) 1839
BseDI CCNNGG 4 cut(s) 1228, 1331, 1369, 1896
BseGI GGATG 5 cut(s) 460, 721, 1361, 1969, 1990
BseLI CCNNNNNNNGG 6 cut(s) 411, 1170, 1229, 1373, 1553, 1680
BseMII CTCAG 9 cut(s) 30, 140, 696, 969, 1557, 1589, 1689, 1795, 1868
BseNI ACTGG 2 cut(s) 1260, 1834
BseSI GKGCMC 1 cut(s) 1509
BseXI GCAGC 4 cut(s) 127, 286, 638, 1424
BseYI CCCAGC 1 cut(s) 410
BsgI GTGCAG 1 cut(s) 1257
Bsh1285I CGRYCG 1 cut(s) 1337
BshFI GGCC 3 cut(s) 23, 254, 1193
BshVI ATCGAT 1 cut(s) 1839
BsiEI CGRYCG 1 cut(s) 1337
BsiHKAI GWGCWC 1 cut(s) 1509
BsiSI CCGG 4 cut(s) 118, 242, 1263, 1721
BslI CCNNNNNNNGG 6 cut(s) 411, 1170, 1229, 1373, 1553, 1680
BsmAI GTCTC 8 cut(s) 6, 490, 685, 751, 958, 1562, 1694, 2000
BsnI GGCC 3 cut(s) 23, 254, 1193
Bso31I GGTCTC 2 cut(s) 685, 958
Bsp1286I GDGCHC 1 cut(s) 1509
Bsp143I GATC 8 cut(s) 56, 299, 572, 638, 845, 911, 1525, 1873
BspACI CCGC 5 cut(s) 138, 277, 307, 1118, 1658
BspANI GGCC 3 cut(s) 23, 254, 1193
BspCNI CTCAG 9 cut(s) 29, 139, 695, 968, 1558, 1588, 1690, 1794, 1869
BspDI ATCGAT 1 cut(s) 1839
BspLI GGNNCC 1 cut(s) 1260
BspMAI CTGCAG 2 cut(s) 145, 1944
BspMI ACCTGC 2 cut(s) 1234, 1723
BspOI GCTAGC 1 cut(s) 1217
BspPI GGATC 1 cut(s) 1881
BspTNI GGTCTC 2 cut(s) 685, 958
BsrI ACTGG 2 cut(s) 1260, 1834
BssECI CCNNGG 4 cut(s) 1228, 1331, 1369, 1896
BssMI GATC 8 cut(s) 56, 299, 572, 638, 845, 911, 1525, 1873
BssNI GRCGYC 1 cut(s) 836
BssT1I CCWWGG 1 cut(s) 1369
Bst2UI CCWGG 2 cut(s) 1230, 1898
Bst4CI ACNGT 2 cut(s) 233, 1057
Bst6I CTCTTC 3 cut(s) 218, 1124, 1957
BstACI GRCGYC 1 cut(s) 836
BstAPI GCANNNNNTGC 2 cut(s) 1892, 1916
BstC8I GCNNGC 2 cut(s) 361, 1215
BstF5I GGATG 5 cut(s) 460, 721, 1361, 1969, 1990
BstHHI GCGC 1 cut(s) 1465
BstKTI GATC 8 cut(s) 59, 302, 575, 641, 848, 914, 1528, 1876
BstMAI GTCTC 8 cut(s) 6, 490, 685, 751, 958, 1562, 1694, 2000
BstMBI GATC 8 cut(s) 56, 299, 572, 638, 845, 911, 1525, 1873
BstMCI CGRYCG 1 cut(s) 1337
BstMWI GCNNNNNNNGC 5 cut(s) 1219, 1469, 1478, 1892, 1916
BstNI CCWGG 2 cut(s) 1230, 1898
BstSCI CCNGG 3 cut(s) 1228, 1261, 1896
BstSFI CTRYAG 2 cut(s) 141, 1940
BstSLI GKGCMC 1 cut(s) 1509
BstV1I GCAGC 4 cut(s) 127, 286, 638, 1424
BstX2I RGATCY 6 cut(s) 56, 299, 638, 911, 1525, 1873
BstYI RGATCY 6 cut(s) 56, 299, 638, 911, 1525, 1873
Bsu15I ATCGAT 1 cut(s) 1839
BsuI GTATCC 1 cut(s) 1287
BsuRI GGCC 3 cut(s) 23, 254, 1193
BsuTUI ATCGAT 1 cut(s) 1839
BtsCI GGATG 5 cut(s) 460, 721, 1361, 1969, 1990
BtsIMutI CAGTG 4 cut(s) 24, 553, 826, 1827
BveI ACCTGC 2 cut(s) 1234, 1723
Cac8I GCNNGC 2 cut(s) 361, 1215
CfoI GCGC 1 cut(s) 1465
Cfr13I GGNCC 1 cut(s) 1556
ClaI ATCGAT 1 cut(s) 1839
CseI GACGC 1 cut(s) 844
Csp6I GTAC 1 cut(s) 1538
CviAII CATG 2 cut(s) 1433, 1754
CviQI GTAC 1 cut(s) 1538
DpnI GATC 8 cut(s) 58, 301, 574, 640, 847, 913, 1527, 1875
DpnII GATC 8 cut(s) 56, 299, 572, 638, 845, 911, 1525, 1873
DraI TTTAAA 1 cut(s) 337
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 3 cut(s) 218, 1124, 1957
EarI CTCTTC 3 cut(s) 218, 1124, 1957
Eco130I CCWWGG 1 cut(s) 1369
Eco31I GGTCTC 2 cut(s) 685, 958
Eco47I GGWCC 1 cut(s) 1556
EcoRI GAATTC 1 cut(s) 985
EcoRII CCWGG 2 cut(s) 1228, 1896
EcoT14I CCWWGG 1 cut(s) 1369
ErhI CCWWGG 1 cut(s) 1369
FaeI CATG 2 cut(s) 1436, 1757
FatI CATG 2 cut(s) 1432, 1753
FauI CCCGC 1 cut(s) 1651
FblI GTMKAC 2 cut(s) 1396, 1562
Fnu4HI GCNGC 5 cut(s) 141, 275, 278, 627, 1438
FokI GGATG 5 cut(s) 467, 728, 1348, 1976, 1997
Fsp4HI GCNGC 5 cut(s) 141, 275, 278, 627, 1438
FspBI CTAG 7 cut(s) 342, 567, 630, 840, 903, 1214, 1581
FspI TGCGCA 1 cut(s) 1464
GlaI GCGC 1 cut(s) 1464
GluI GCNGC 5 cut(s) 141, 275, 278, 627, 1438
GsaI CCCAGC 1 cut(s) 414
GsuI CTGGAG 1 cut(s) 72
HaeIII GGCC 3 cut(s) 23, 254, 1193
HapII CCGG 4 cut(s) 118, 242, 1263, 1721
HgaI GACGC 1 cut(s) 844
HhaI GCGC 1 cut(s) 1465
Hin1I GRCGYC 1 cut(s) 836
Hin1II CATG 2 cut(s) 1436, 1757
Hin6I GCGC 1 cut(s) 1463
HinP1I GCGC 1 cut(s) 1463
HincII GTYRAC 2 cut(s) 607, 880
HindII GTYRAC 2 cut(s) 607, 880
HindIII AAGCTT 1 cut(s) 198
HpaII CCGG 4 cut(s) 118, 242, 1263, 1721
HphI GGTGA 2 cut(s) 65, 1033
Hpy166II GTNNAC 7 cut(s) 212, 607, 880, 1173, 1397, 1507, 1563
Hpy8I GTNNAC 7 cut(s) 212, 607, 880, 1173, 1397, 1507, 1563
HpyAV CCTTC 6 cut(s) 177, 670, 943, 1061, 1602, 1640
HpyCH4III ACNGT 2 cut(s) 233, 1057
HpyF10VI GCNNNNNNNGC 5 cut(s) 1219, 1469, 1478, 1892, 1916
Hsp92I GRCGYC 1 cut(s) 836
Hsp92II CATG 2 cut(s) 1436, 1757
HspAI GCGC 1 cut(s) 1463
Kzo9I GATC 8 cut(s) 56, 299, 572, 638, 845, 911, 1525, 1873
LmnI GCTCC 5 cut(s) 244, 532, 701, 805, 974
Lsp1109I GCAGC 4 cut(s) 127, 286, 638, 1424
LweI GCATC 3 cut(s) 1786, 1897, 1906
MaeI CTAG 7 cut(s) 342, 567, 630, 840, 903, 1214, 1581
MaeIII GTNAC 2 cut(s) 227, 1688
MalI GATC 8 cut(s) 58, 301, 574, 640, 847, 913, 1527, 1875
MboI GATC 8 cut(s) 56, 299, 572, 638, 845, 911, 1525, 1873
MfeI CAATTG 1 cut(s) 1772
MflI RGATCY 6 cut(s) 56, 299, 638, 911, 1525, 1873
MhlI GDGCHC 1 cut(s) 1509
MlyI GAGTC 7 cut(s) 8, 492, 556, 753, 1424, 1864, 1967
MmeI TCCRAC 3 cut(s) 291, 1625, 1941
MseI TTAA 3 cut(s) 336, 1404, 1727
MspA1I CMGCKG 2 cut(s) 140, 277
MspI CCGG 4 cut(s) 118, 242, 1263, 1721
MspR9I CCNGG 3 cut(s) 1230, 1263, 1898
MunI CAATTG 1 cut(s) 1772
MvaI CCWGG 2 cut(s) 1230, 1898
MwoI GCNNNNNNNGC 5 cut(s) 1219, 1469, 1478, 1892, 1916
NciI CCSGG 1 cut(s) 1263
NdeII GATC 8 cut(s) 56, 299, 572, 638, 845, 911, 1525, 1873
NheI GCTAGC 1 cut(s) 1213
NlaIII CATG 2 cut(s) 1436, 1757
NlaIV GGNNCC 1 cut(s) 1260
NsbI TGCGCA 1 cut(s) 1464
PcsI WCGNNNNNNNCGW 1 cut(s) 383
PflMI CCANNNNNTGG 1 cut(s) 1170
PfoI TCCNGGA 1 cut(s) 1261
PkrI GCNGC 5 cut(s) 142, 276, 279, 628, 1439
PleI GAGTC 7 cut(s) 8, 491, 556, 752, 1423, 1863, 1966
PpsI GAGTC 7 cut(s) 8, 491, 556, 752, 1423, 1863, 1966
Psp6I CCWGG 2 cut(s) 1228, 1896
PspFI CCCAGC 1 cut(s) 410
PspGI CCWGG 2 cut(s) 1228, 1896
PspN4I GGNNCC 1 cut(s) 1260
PspPI GGNCC 1 cut(s) 1556
PsrI GAACNNNNNNTAC 2 cut(s) 1018, 1050
PstI CTGCAG 2 cut(s) 145, 1944
PsuI RGATCY 6 cut(s) 56, 299, 638, 911, 1525, 1873
RsaI GTAC 1 cut(s) 1539
RsaNI GTAC 1 cut(s) 1538
SaqAI TTAA 3 cut(s) 336, 1404, 1727
SatI GCNGC 5 cut(s) 141, 275, 278, 627, 1438
Sau3AI GATC 8 cut(s) 56, 299, 572, 638, 845, 911, 1525, 1873
Sau96I GGNCC 1 cut(s) 1556
ScaI AGTACT 1 cut(s) 1539
SchI GAGTC 7 cut(s) 8, 492, 556, 753, 1424, 1864, 1967
ScrFI CCNGG 3 cut(s) 1230, 1263, 1898
SduI GDGCHC 1 cut(s) 1509
SfaNI GCATC 3 cut(s) 1786, 1897, 1906
SfcI CTRYAG 2 cut(s) 141, 1940
SinI GGWCC 1 cut(s) 1556
SmiI ATTTAAAT 1 cut(s) 337
SmlI CTYRAG 4 cut(s) 218, 1086, 1541, 1678
SmoI CTYRAG 4 cut(s) 218, 1086, 1541, 1678
SpeI ACTAGT 1 cut(s) 902
SsiI CCGC 5 cut(s) 138, 277, 307, 1118, 1658
SspMI CTAG 7 cut(s) 342, 567, 630, 840, 903, 1214, 1581
StyD4I CCNGG 3 cut(s) 1228, 1261, 1896
StyI CCWWGG 1 cut(s) 1369
SwaI ATTTAAAT 1 cut(s) 337
TaaI ACNGT 2 cut(s) 233, 1057
TaqI TCGA 8 cut(s) 377, 386, 416, 578, 779, 851, 1337, 1839
TaqII GACCGA 1 cut(s) 1323
TatI WGTACW 1 cut(s) 1537
TauI GCSGC 1 cut(s) 280
Tru1I TTAA 3 cut(s) 336, 1404, 1727
Tru9I TTAA 3 cut(s) 336, 1404, 1727
TscAI CASTG 4 cut(s) 24, 553, 826, 1834
TseI GCWGC 4 cut(s) 140, 274, 626, 1437
TspDTI ATGAA 5 cut(s) 471, 732, 1350, 1857, 2013
TspGWI ACGGA 1 cut(s) 1548
TspRI CASTG 4 cut(s) 24, 553, 826, 1834
Van91I CCANNNNNTGG 1 cut(s) 1170
VneI GTGCAC 1 cut(s) 1505
VpaK11BI GGWCC 1 cut(s) 1556
XapI RAATTY 7 cut(s) 176, 332, 657, 930, 985, 1357, 1606
XbaI TCTAGA 1 cut(s) 341
XcmI CCANNNNNNNNNTGG 2 cut(s) 661, 934
XmiI GTMKAC 2 cut(s) 1396, 1562
XspI CTAG 7 cut(s) 342, 567, 630, 840, 903, 1214, 1581
ZrmI AGTACT 1 cut(s) 1539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.