FvH4_1g18920
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0010457
Physical Location & Seq
Forward (+)
11218257 .. 11221836
3580 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18920.t1

Sequence Viewer

Length: 1716 bp
ATGAGGAACGCCCACCAAGTGTTTGTGAAAATGCCTGGGAGAGTCTCAGTGGCCTCCACACCCCAACCATGCACAATTCTCCGCAGATCTCCCAGATTTCTTTACCCCACCACCACTCCAGAGCCACAGAGACTCTCCACACCGTCCCGGAAGCCTCGGAGAAACACCGCTGCTGAATTCGAAAACCCGAAAACCCCCAAATCCAAATCCGAGCAGCCGGCCACGATTCTCCGAAAGTCGCGGCGGCTTGTGGAACTGAAGGAGAGAGCTGAGCAGTTGGGAAACCATGTAAGCCCCAAATCCAAATCTAGAAGCAACAATGCGGTAAGGTGTTTGAAGCTTTCGAGTGAATCGAAGAAATTGAGTAAAGAAAATGGTGGGTGCAGAGAATCTAGGGTTTTGAATGAGGATTCCACACCGGAGAGAGTGTCGAAGAAATTGGGGGTTTCTGGTTGTGGGTCAGAGAATTGCGAGAAATCGAGGTCTGGGTCGAGAAAAGCTCGAAGATTGGACAATGTGAGTACTGGGTTTCGGACTCCTAGACGATCTTCGAGGTTGGTTGGTAAGCAAAATGTGGTTGAGAAACAAACTGATAAGGCAAATTGTGGTGGATCGAAGAGTAAGTCCAAAATTTCTTTGGATAAAGAGAAGGTCTCTGGTGCTGGTAAAGATGGAGCTTGTGTGGATTCAGGTGGAATCGTTTCGGAAAAGAGCAAAAGGGTGAGTAAGAAAAGTTCAGTTGGTGGTGTTGAAACAGTTAGTGTGGAATGTGGAGAAGGCAAAGGTCAGGAGTCGGATTGCGGAGATAAGAAAGTTCCGGTTAGGAGGAAGAGAAAGAGAGGTGAGGAAGATGTTAAGGTGGCTGAAGGCTGGACAAAGGAACAGGAATTGGCCTTGCAGAGAGCTTATTTGCTAGCAAAACCGACGTCCGGTTTCTGGAAGCAGGTTGCTAAACTGGTTCCTGGAAAAACTGCACAGGATTGCTTTGATAGGATACATTCTGACCATATAACCCCTCCTCACCCTCTTCCTCGGTCGAGGGCAAAGATAACAACAAACTCATCCCCCCTCGGAGGATTTTCACTCTCTGCAAGTAAACTGCTTAATCCCATCGAGTCAAAGGCTAAAAGACAAGGTTGCAATAAACAGAGAAGCCATCTTGCACAGAAAACCGTCAGAGCGTTATTACACAAGCATTATCAAGTGCACCAAGAGTTTGAGGCAGATCTATTTTCAGTACTTGAGCCTAGTGTAGGTCCATCTACTGAAACTTCTGAGCCTAGTGTTATACCTTCTACTCCAACAAACTCACAAGTGAAGCAGGGATTTCTTCACAAGAGCAGTCAAATATCACCTGCAGGTCAGAAGAAGCCCCTTTCAAGGTTTAGTAACCCATCTGACACATCTCTTGTTAGTCCTCCGGTATTAAAGAAGGTCAAGAACAAGATCTTGCATGAGAAATATATTGACCAATTGCAAATCAGGGAAGCTAAGAGAAAAACTTTAGCCAAGAATGCTAAAAAATCCACTGGTGGAATCAATGAAATAAAAATGAGCCATATTCAAGAAGTGGATCTGAGATCTGCAAAAATTGCCCTAGTTTCTGATGCAAGAGAAGCTATCAATAAGCTCAAACATCTTGAGGAAAATTCTTCAGAGTCAGATGATGATGGAATTGCAAGGGACGATGAGGAAGATGAAGATGAGACTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

572

Amino Acids

62.93

Weight (kDa)

9.9

Isoelectric Point (pI)

60.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53440 AT3G53440
fragaria_vesca FvH4_1g18920
malus_domestica MD01G1045600.v1.1 MD15G1306300.v1.1
prunus_persica Prupe.6G210300_v2.0.a1
pyrus_communis pycom01g07170 pycom15g27060 pycom15g27070
rosa_chinensis RchiOBHm_Chr2g0109931
rosa_laevigata RLG00000017770 RLG00000036544
rosa_multiflora Rmu_sc0005173.1_g000019
rosa_roxburghii Rroxscaffold_2G00133870
rosa_rugosa Rorug02G0163900
rosa_samantha Rh2AG215900 Rh2BG225900 Rh2CG218100 Rh2DG221400 Rh5DG403700
rosa_wichuraiana Rw2G016670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1363
AatII GACGTC 1 cut(s) 929
Acc36I ACCTGC 3 cut(s) 934, 1349, 1363
AccII CGCG 1 cut(s) 241
AciI CCGC 6 cut(s) 82, 168, 241, 244, 323, 801
AclWI GGATC 2 cut(s) 619, 1581
AcoI YGGCCR 1 cut(s) 219
AcsI RAATTY 3 cut(s) 176, 630, 1648
AcuI CTGAAG 3 cut(s) 278, 885, 1638
AcyI GRCGYC 1 cut(s) 926
AdeI CACNNNGTG 1 cut(s) 19
AfaI GTAC 2 cut(s) 523, 1239
AfiI CCNNNNNNNGG 5 cut(s) 929, 936, 1073, 1253, 1380
AgsI TTSAA 5 cut(s) 337, 403, 752, 1380, 1565
AjnI CCWGG 2 cut(s) 34, 961
AluBI AGCT 8 cut(s) 269, 340, 500, 677, 905, 1490, 1619, 1630
AluI AGCT 8 cut(s) 269, 340, 500, 677, 905, 1490, 1619, 1630
Alw21I GWGCWC 1 cut(s) 1209
Alw26I GTCTC 4 cut(s) 49, 124, 658, 1700
Alw44I GTGCAC 1 cut(s) 1205
AlwI GGATC 2 cut(s) 619, 1581
AoxI GGCC 3 cut(s) 51, 219, 891
ApaLI GTGCAC 1 cut(s) 1205
ApeKI GCWGC 2 cut(s) 170, 214
ApoI RAATTY 3 cut(s) 176, 630, 1648
ArsI GACNNNNNNTTYG 4 cut(s) 608, 640, 911, 943
Asp700I GAANNNNTTC 1 cut(s) 700
AspS9I GGNCC 1 cut(s) 1256
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 4 cut(s) 733, 854, 1013, 1344
AsuII TTCGAA 1 cut(s) 180
AsuNHI GCTAGC 1 cut(s) 913
AvaII GGWCC 1 cut(s) 1256
BaeGI GKGCMC 1 cut(s) 1209
Bbv12I GWGCWC 1 cut(s) 1209
BbvI GCAGC 2 cut(s) 157, 226
BccI CCATC 6 cut(s) 665, 1118, 1164, 1267, 1402, 1664
BciT130I CCWGG 2 cut(s) 36, 963
BciVI GTATCC 1 cut(s) 987
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 4 cut(s) 49, 124, 658, 1700
BfaI CTAG 7 cut(s) 309, 393, 540, 914, 1248, 1281, 1598
BfmI CTRYAG 1 cut(s) 1356
BfuAI ACCTGC 3 cut(s) 934, 1349, 1363
BfuI GTATCC 1 cut(s) 987
BglII AGATCT 4 cut(s) 86, 1225, 1446, 1580
BisI GCNGC 4 cut(s) 171, 215, 242, 245
BlpI GCTNAGC 1 cut(s) 270
BlsI GCNGC 4 cut(s) 172, 216, 243, 246
BmcAI AGTACT 2 cut(s) 523, 1239
Bme1390I CCNGG 3 cut(s) 36, 148, 963
Bme18I GGWCC 1 cut(s) 1256
BmgT120I GGNCC 1 cut(s) 1256
BmiI GGNNCC 1 cut(s) 960
BmrFI CCNGG 3 cut(s) 36, 148, 963
BmrI ACTGGG 1 cut(s) 534
BmsI GCATC 1 cut(s) 1597
BmtI GCTAGC 1 cut(s) 917
BmuI ACTGGG 1 cut(s) 534
BplI GAGNNNNNCTC 4 cut(s) 484, 516, 638, 670
BpmI CTGGAG 1 cut(s) 102
Bpu1102I GCTNAGC 1 cut(s) 270
Bpu14I TTCGAA 1 cut(s) 180
BpuEI CTTGAG 2 cut(s) 1262, 1661
BpuMI CCSGG 1 cut(s) 148
BsaHI GRCGYC 1 cut(s) 926
BsaI GGTCTC 1 cut(s) 658
BsaJI CCNNGG 4 cut(s) 35, 155, 1031, 1069
BsaWI WCCGGW 4 cut(s) 418, 817, 929, 1420
BsaXI ACNNNNNCTCC 6 cut(s) 100, 130, 413, 443, 666, 696
Bsc4I CCNNNNNNNGG 5 cut(s) 929, 936, 1073, 1253, 1380
Bse118I RCCGGY 1 cut(s) 217
Bse1I ACTGG 3 cut(s) 529, 960, 1534
BseBI CCWGG 2 cut(s) 36, 963
BseDI CCNNGG 4 cut(s) 35, 155, 1031, 1069
BseGI GGATG 1 cut(s) 1061
BseLI CCNNNNNNNGG 5 cut(s) 929, 936, 1073, 1253, 1380
BseMII CTCAG 4 cut(s) 60, 261, 1266, 1568
BseNI ACTGG 3 cut(s) 529, 960, 1534
BseRI GAGGAG 1 cut(s) 1008
BseSI GKGCMC 1 cut(s) 1209
BseXI GCAGC 2 cut(s) 157, 226
BsgI GTGCAG 2 cut(s) 403, 957
Bsh1236I CGCG 1 cut(s) 241
Bsh1285I CGRYCG 1 cut(s) 1037
BshFI GGCC 3 cut(s) 53, 221, 893
BsiEI CGRYCG 1 cut(s) 1037
BsiHKAI GWGCWC 1 cut(s) 1209
BsiSI CCGG 6 cut(s) 148, 218, 419, 818, 930, 1421
BslFI GGGAC 2 cut(s) 130, 1697
BslI CCNNNNNNNGG 5 cut(s) 929, 936, 1073, 1253, 1380
BsmAI GTCTC 4 cut(s) 49, 124, 658, 1700
BsmFI GGGAC 2 cut(s) 130, 1697
BsmI GAATGC 1 cut(s) 1519
BsnI GGCC 3 cut(s) 53, 221, 893
Bso31I GGTCTC 1 cut(s) 658
Bsp119I TTCGAA 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 1209
Bsp143I GATC 7 cut(s) 86, 545, 611, 1225, 1446, 1573, 1580
Bsp1720I GCTNAGC 1 cut(s) 270
BspACI CCGC 6 cut(s) 82, 168, 241, 244, 323, 801
BspANI GGCC 3 cut(s) 53, 221, 893
BspCNI CTCAG 4 cut(s) 59, 262, 1267, 1569
BspFNI CGCG 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 960
BspMAI CTGCAG 1 cut(s) 1360
BspMI ACCTGC 3 cut(s) 934, 1349, 1363
BspOI GCTAGC 1 cut(s) 917
BspPI GGATC 2 cut(s) 619, 1581
BspT104I TTCGAA 1 cut(s) 180
BspTNI GGTCTC 1 cut(s) 658
BsrFI RCCGGY 1 cut(s) 217
BsrI ACTGG 3 cut(s) 529, 960, 1534
BssAI RCCGGY 1 cut(s) 217
BssECI CCNNGG 4 cut(s) 35, 155, 1031, 1069
BssMI GATC 7 cut(s) 86, 545, 611, 1225, 1446, 1573, 1580
BssNI GRCGYC 1 cut(s) 926
Bst2UI CCWGG 2 cut(s) 36, 963
Bst4CI ACNGT 3 cut(s) 144, 757, 1174
Bst6I CTCTTC 3 cut(s) 611, 824, 1032
BstACI GRCGYC 1 cut(s) 926
BstAPI GCANNNNNTGC 1 cut(s) 1592
BstBI TTCGAA 1 cut(s) 180
BstC8I GCNNGC 2 cut(s) 219, 915
BstDEI CTNAG 5 cut(s) 46, 270, 1275, 1491, 1577
BstENI CCTNNNNNAGG 1 cut(s) 1251
BstF5I GGATG 1 cut(s) 1061
BstFNI CGCG 1 cut(s) 241
BstKTI GATC 7 cut(s) 89, 548, 614, 1228, 1449, 1576, 1583
BstMAI GTCTC 4 cut(s) 49, 124, 658, 1700
BstMBI GATC 7 cut(s) 86, 545, 611, 1225, 1446, 1573, 1580
BstMCI CGRYCG 1 cut(s) 1037
BstMWI GCNNNNNNNGC 3 cut(s) 1514, 1592, 1616
BstNI CCWGG 2 cut(s) 36, 963
BstSCI CCNGG 3 cut(s) 34, 146, 961
BstSFI CTRYAG 1 cut(s) 1356
BstSLI GKGCMC 1 cut(s) 1209
BstUI CGCG 1 cut(s) 241
BstV1I GCAGC 2 cut(s) 157, 226
BstX2I RGATCY 5 cut(s) 86, 1225, 1446, 1573, 1580
BstYI RGATCY 5 cut(s) 86, 1225, 1446, 1573, 1580
BsuI GTATCC 1 cut(s) 987
BsuRI GGCC 3 cut(s) 53, 221, 893
BtsCI GGATG 1 cut(s) 1061
BtsIMutI CAGTG 2 cut(s) 54, 1527
BveI ACCTGC 3 cut(s) 934, 1349, 1363
Cac8I GCNNGC 2 cut(s) 219, 915
Cfr10I RCCGGY 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 1256
Csp6I GTAC 2 cut(s) 522, 1238
CviAII CATG 3 cut(s) 69, 287, 1454
CviQI GTAC 2 cut(s) 522, 1238
DdeI CTNAG 5 cut(s) 46, 270, 1275, 1491, 1577
DpnI GATC 7 cut(s) 88, 547, 613, 1227, 1448, 1575, 1582
DpnII GATC 7 cut(s) 86, 545, 611, 1225, 1446, 1573, 1580
DraIII CACNNNGTG 1 cut(s) 19
EaeI YGGCCR 1 cut(s) 219
Eam1104I CTCTTC 3 cut(s) 611, 824, 1032
EarI CTCTTC 3 cut(s) 611, 824, 1032
Eco31I GGTCTC 1 cut(s) 658
Eco47I GGWCC 1 cut(s) 1256
Eco57I CTGAAG 3 cut(s) 278, 885, 1638
EcoNI CCTNNNNNAGG 1 cut(s) 1251
EcoRI GAATTC 1 cut(s) 176
EcoRII CCWGG 2 cut(s) 34, 961
FaeI CATG 3 cut(s) 72, 290, 1457
FaiI YATR 8 cut(s) 70, 288, 1008, 1010, 1289, 1455, 1464, 1560
FaqI GGGAC 2 cut(s) 130, 1697
FatI CATG 3 cut(s) 68, 286, 1453
Fnu4HI GCNGC 4 cut(s) 171, 215, 242, 245
FokI GGATG 1 cut(s) 1048
Fsp4HI GCNGC 4 cut(s) 171, 215, 242, 245
FspBI CTAG 7 cut(s) 309, 393, 540, 914, 1248, 1281, 1598
GluI GCNGC 4 cut(s) 171, 215, 242, 245
GsuI CTGGAG 1 cut(s) 102
HaeIII GGCC 3 cut(s) 53, 221, 893
HapII CCGG 6 cut(s) 148, 218, 419, 818, 930, 1421
Hin1I GRCGYC 1 cut(s) 926
Hin1II CATG 3 cut(s) 72, 290, 1457
HindIII AAGCTT 1 cut(s) 338
HpaII CCGG 6 cut(s) 148, 218, 419, 818, 930, 1421
HphI GGTGA 4 cut(s) 733, 854, 1013, 1344
Hpy166II GTNNAC 2 cut(s) 1097, 1207
Hpy188III TCNNGA 8 cut(s) 119, 309, 492, 788, 937, 1438, 1565, 1640
Hpy8I GTNNAC 2 cut(s) 1097, 1207
Hpy99I CGWCG 1 cut(s) 928
HpyAV CCTTC 6 cut(s) 253, 643, 770, 860, 1302, 1426
HpyCH4III ACNGT 3 cut(s) 144, 757, 1174
HpyCH4IV ACGT 1 cut(s) 926
HpyF10VI GCNNNNNNNGC 3 cut(s) 1514, 1592, 1616
HpyF3I CTNAG 5 cut(s) 46, 270, 1275, 1491, 1577
HpySE526I ACGT 1 cut(s) 926
Hsp92I GRCGYC 1 cut(s) 926
Hsp92II CATG 3 cut(s) 72, 290, 1457
KroI GCCGGC 1 cut(s) 217
KroNI GCCGGC 1 cut(s) 219
Kzo9I GATC 7 cut(s) 86, 545, 611, 1225, 1446, 1573, 1580
LmnI GCTCC 1 cut(s) 674
Lsp1109I GCAGC 2 cut(s) 157, 226
LweI GCATC 1 cut(s) 1597
MaeI CTAG 7 cut(s) 309, 393, 540, 914, 1248, 1281, 1598
MaeII ACGT 1 cut(s) 926
MaeIII GTNAC 1 cut(s) 1388
MalI GATC 7 cut(s) 88, 547, 613, 1227, 1448, 1575, 1582
MboI GATC 7 cut(s) 86, 545, 611, 1225, 1446, 1573, 1580
MfeI CAATTG 1 cut(s) 1472
MflI RGATCY 5 cut(s) 86, 1225, 1446, 1573, 1580
MhlI GDGCHC 1 cut(s) 1209
MlyI GAGTC 6 cut(s) 51, 126, 529, 800, 1124, 1667
MmeI TCCRAC 2 cut(s) 774, 1325
MroNI GCCGGC 1 cut(s) 217
MroXI GAANNNNTTC 1 cut(s) 700
MseI TTAA 3 cut(s) 855, 1104, 1427
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 6 cut(s) 148, 218, 419, 818, 930, 1421
MspR9I CCNGG 3 cut(s) 36, 148, 963
MunI CAATTG 1 cut(s) 1472
Mva1269I GAATGC 1 cut(s) 1519
MvaI CCWGG 2 cut(s) 36, 963
MvnI CGCG 1 cut(s) 241
MwoI GCNNNNNNNGC 3 cut(s) 1514, 1592, 1616
NaeI GCCGGC 1 cut(s) 219
NciI CCSGG 1 cut(s) 148
NdeII GATC 7 cut(s) 86, 545, 611, 1225, 1446, 1573, 1580
NgoMIV GCCGGC 1 cut(s) 217
NheI GCTAGC 1 cut(s) 913
NlaIII CATG 3 cut(s) 72, 290, 1457
NlaIV GGNNCC 1 cut(s) 960
NspV TTCGAA 1 cut(s) 180
PaqCI CACCTGC 1 cut(s) 1363
PcsI WCGNNNNNNNCGW 1 cut(s) 350
PctI GAATGC 1 cut(s) 1519
PdiI GCCGGC 1 cut(s) 219
PdmI GAANNNNTTC 1 cut(s) 700
PfeI GAWTC 7 cut(s) 226, 350, 389, 410, 686, 696, 1536
PfoI TCCNGGA 2 cut(s) 146, 961
PkrI GCNGC 4 cut(s) 172, 216, 243, 246
PleI GAGTC 6 cut(s) 50, 126, 529, 799, 1123, 1666
PpsI GAGTC 6 cut(s) 50, 126, 529, 799, 1123, 1666
Psp6I CCWGG 2 cut(s) 34, 961
PspGI CCWGG 2 cut(s) 34, 961
PspN4I GGNNCC 1 cut(s) 960
PspPI GGNCC 1 cut(s) 1256
PsrI GAACNNNNNNTAC 2 cut(s) 718, 750
PstI CTGCAG 1 cut(s) 1360
PsuI RGATCY 5 cut(s) 86, 1225, 1446, 1573, 1580
RsaI GTAC 2 cut(s) 523, 1239
RsaNI GTAC 2 cut(s) 522, 1238
SaqAI TTAA 3 cut(s) 855, 1104, 1427
SatI GCNGC 4 cut(s) 171, 215, 242, 245
Sau3AI GATC 7 cut(s) 86, 545, 611, 1225, 1446, 1573, 1580
Sau96I GGNCC 1 cut(s) 1256
SbfI CCTGCAGG 1 cut(s) 1360
ScaI AGTACT 2 cut(s) 523, 1239
SchI GAGTC 6 cut(s) 51, 126, 529, 800, 1124, 1667
ScrFI CCNGG 3 cut(s) 36, 148, 963
SdaI CCTGCAGG 1 cut(s) 1360
SduI GDGCHC 1 cut(s) 1209
SfaNI GCATC 1 cut(s) 1597
SfcI CTRYAG 1 cut(s) 1356
SfuI TTCGAA 1 cut(s) 180
SinI GGWCC 1 cut(s) 1256
SmlI CTYRAG 2 cut(s) 1241, 1640
SmoI CTYRAG 2 cut(s) 1241, 1640
Sse8387I CCTGCAGG 1 cut(s) 1360
SsiI CCGC 6 cut(s) 82, 168, 241, 244, 323, 801
SspMI CTAG 7 cut(s) 309, 393, 540, 914, 1248, 1281, 1598
StyD4I CCNGG 3 cut(s) 34, 146, 961
TaaI ACNGT 3 cut(s) 144, 757, 1174
TaiI ACGT 1 cut(s) 929
TaqII GACCGA 1 cut(s) 1023
TatI WGTACW 2 cut(s) 521, 1237
TauI GCSGC 2 cut(s) 244, 247
TfiI GAWTC 7 cut(s) 226, 350, 389, 410, 686, 696, 1536
Tru1I TTAA 3 cut(s) 855, 1104, 1427
Tru9I TTAA 3 cut(s) 855, 1104, 1427
TscAI CASTG 2 cut(s) 54, 1534
TseI GCWGC 2 cut(s) 170, 214
TspDTI ATGAA 2 cut(s) 1557, 1713
TspRI CASTG 2 cut(s) 54, 1534
VneI GTGCAC 1 cut(s) 1205
VpaK11BI GGWCC 1 cut(s) 1256
XagI CCTNNNNNAGG 1 cut(s) 1251
XapI RAATTY 3 cut(s) 176, 630, 1648
XbaI TCTAGA 1 cut(s) 308
XcmI CCANNNNNNNNNTGG 1 cut(s) 634
XmnI GAANNNNTTC 1 cut(s) 700
XspI CTAG 7 cut(s) 309, 393, 540, 914, 1248, 1281, 1598
ZraI GACGTC 1 cut(s) 927
ZrmI AGTACT 2 cut(s) 523, 1239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.