Rroxscaffold_2G00133870
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0010457
Physical Location & Seq
Reverse (-)
71353398 .. 71356917
3520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00133870.1

Sequence Viewer

Length: 1818 bp
ATGAAGAATGCCCACCAGGTGTTTGTGAAAATGCCTGAGAGAGACTCAGTGGCCTCCACACCCCAACAATCCTCAATTCTCCGAAGATCTCCCAGATTTCTTCACCCCAAGACGACTCCAGAACCACAGAAACTCGCCACACCTCGCCGGAAGCCTCAGAGAAAGACCGCTGCAGAATCCGAAAATCCGAAAACCCCCAAGTCCAAATTTAGAAGGAACGGGGCAAAAGCTTTGGATAGTAGACTTCTTGAGAAGAGTAACAGTCCAGAACCGGAGCAAACGGCCACGATTCTCCGAAAGTCGCAGCGGCTTGTGGAATTGAAAGAGAGATCTGGGCAGTTGGAAAACCCTAAAACCCCCAAATTTAAATCTAGAAGCGACAATGTGGTACGCCCTTTGAATCTTTCGATTGGCTCGAAGAAATTGAGTAAAGCCAATGCTGGGTCGAGAGAATCTAAGGTTTTGAATCAGGAGGTGGTTGTGGTGGTGGTGGATGAAGATGAGGATTCCTCCCCAGAGAGAGTCTCAAAGAAATTGGGGGAATCTCATTATGGGTCTCGTAATTGCGAGAAATCGAGTTCTGGGTCAAGAAAAGCTCCAAGATTGAACAATGTCAGTGATGGGTTTCAGACTCCTAGACGATCTTCGAGGTTGGGTGGTAAGCAGAATGTGGTTGACAAACAAACTGATAGGGCAACTAGTGGTAGATCTAAGAGTAAGTCCAAAATTTCTCTGGACAAAGAGAAGGTCTCAGGTGTTCGGAAAGATGGAGCTTGTGTGAATTCAGGCGAAATTGTTTTGGAAAAGAGCAAAAGGGTGAGCAAGAAAAGTTCAGTCAGTGGTGTTGAAACAGTTAGTGTGGAAGGTGGAGGGGGCAAAGCTCAAGAGTTAGATTGCGGAGATAAAAAGGTTGCGGTTAGGAGGAAGAGAAAGAGAGGTGGAGAAGATGTCAAGGTCGCCAAAGGGTGGACAAAGGAACAAGAATTGGCCTTGCAGAGAGCTTATTTGCTAGCAAAGCCGACGCCTGGTTTCTGGAAGCAGGTTTCTAAACTGATATTTAATTTAGGAGGTGGCAGAATAGTCCACCCAGATAATGAACTCAATAATATTGCTAAGGGAATAAGGGATGGCAGTAGCATAGTGATTTCTATTGAGTATGTGTTTTCAGGACCTGGACAAGACAAGGAGACAAATTTAAGACTGCTTAATCCCGTTGAGTCAAAGGCTAAAAGACATGGCTGCAATAAACAGAGAAGCCATCTTGCGCAGAAAACTGTCAGAGCGTTATTACACAAGCATTATCAAGTGCACCAAGAGTTTGAGGCAGATCTATTTTCAGTACTTGAGCCAAGTGTAGGTCCATCTACTGAGACTTCTCAGCCTTGTGTTATACCTTCTACTCCAACAAATTCACAGGTAAAGCAGGGATTCCTTCACAAGAGCAGTCAAATATCATCTGCGGGTCATAAGAAGCCCTTCTCAAGGTTTAGTAACTCATCTGAGACATCTCTTGTTAGTCCTCCGGTATTAAAGCAGGTCAAGAACAAGGTCTTGCATGAGAAATATATTGACCAATTGCATATCAGGGAAGCTAAGAGAAAAACATTAGCTAAAAACACTAAAAAATCCACTGGCGGAATCGATGAAACAAAAAAGAGTCATATTCAGGAAGTGGATCTGAGAACTGCAAAAATTGCCCTGGTTTCTGATGCAAGAGATGCTATCAATAAGCTTAAACATCTGCAGGAAAACTCTTCGGAGTCGGATGATGATGGAATTGCAAGGGATGATGAGGAAGATGAAGATGAGACTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

605

Amino Acids

67.0

Weight (kDa)

9.92

Isoelectric Point (pI)

54.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53440 AT3G53440
fragaria_vesca FvH4_1g18920
malus_domestica MD01G1045600.v1.1 MD15G1306300.v1.1
prunus_persica Prupe.6G210300_v2.0.a1
pyrus_communis pycom01g07170 pycom15g27060 pycom15g27070
rosa_chinensis RchiOBHm_Chr2g0109931
rosa_laevigata RLG00000017770 RLG00000036544
rosa_multiflora Rmu_sc0005173.1_g000019
rosa_roxburghii Rroxscaffold_2G00133870
rosa_rugosa Rorug02G0163900
rosa_samantha Rh2AG215900 Rh2BG225900 Rh2CG218100 Rh2DG221400 Rh5DG403700
rosa_wichuraiana Rw2G016670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1266
Acc36I ACCTGC 2 cut(s) 1030, 1525
AccB7I CCANNNNNTGG 1 cut(s) 966
AccI GTMKAC 1 cut(s) 241
AciI CCGC 6 cut(s) 168, 307, 897, 914, 1460, 1635
AclWI GGATC 1 cut(s) 1683
AcoI YGGCCR 1 cut(s) 282
AcsI RAATTY 6 cut(s) 206, 362, 726, 781, 1192, 1408
AcyI GRCGYC 1 cut(s) 1022
AdeI CACNNNGTG 1 cut(s) 19
AfaI GTAC 2 cut(s) 390, 1341
AfiI CCNNNNNNNGG 5 cut(s) 441, 966, 1025, 1355, 1482
AgsI TTSAA 5 cut(s) 322, 400, 466, 607, 848
AhlI ACTAGT 1 cut(s) 698
AjnI CCWGG 4 cut(s) 15, 1024, 1171, 1698
AluBI AGCT 8 cut(s) 230, 596, 773, 881, 1001, 1592, 1610, 1732
AluI AGCT 8 cut(s) 230, 596, 773, 881, 1001, 1592, 1610, 1732
Alw21I GWGCWC 1 cut(s) 1311
Alw26I GTCTC 8 cut(s) 36, 529, 561, 754, 1181, 1364, 1496, 1802
Alw44I GTGCAC 1 cut(s) 1307
AlwI GGATC 1 cut(s) 1683
AlwNI CAGNNNCTG 1 cut(s) 1172
AoxI GGCC 3 cut(s) 51, 282, 987
ApaLI GTGCAC 1 cut(s) 1307
ApeKI GCWGC 3 cut(s) 170, 304, 1239
ApoI RAATTY 6 cut(s) 206, 362, 726, 781, 1192, 1408
ArsI GACNNNNNNTTYG 2 cut(s) 732, 764
Asp700I GAANNNNTTC 1 cut(s) 1475
AspLEI GCGC 1 cut(s) 1267
AspS9I GGNCC 2 cut(s) 1169, 1358
AsuHPI GGTGA 2 cut(s) 95, 829
AsuNHI GCTAGC 1 cut(s) 1009
AvaII GGWCC 2 cut(s) 1169, 1358
BaeGI GKGCMC 1 cut(s) 1311
Bbv12I GWGCWC 1 cut(s) 1311
BbvI GCAGC 3 cut(s) 157, 316, 1226
BccI CCATC 6 cut(s) 614, 761, 1121, 1266, 1369, 1766
BceAI ACGGC 1 cut(s) 297
BciT130I CCWGG 4 cut(s) 17, 1026, 1173, 1700
BcoDI GTCTC 8 cut(s) 36, 529, 561, 754, 1181, 1364, 1496, 1802
BcuI ACTAGT 1 cut(s) 698
BfaI CTAG 4 cut(s) 372, 636, 699, 1010
BfmI CTRYAG 2 cut(s) 171, 1742
BfuAI ACCTGC 2 cut(s) 1030, 1525
BglII AGATCT 4 cut(s) 86, 329, 707, 1327
BisI GCNGC 4 cut(s) 171, 305, 308, 1240
BlsI GCNGC 4 cut(s) 172, 306, 309, 1241
BmcAI AGTACT 1 cut(s) 1341
Bme1390I CCNGG 4 cut(s) 17, 1026, 1173, 1700
Bme18I GGWCC 2 cut(s) 1169, 1358
BmgT120I GGNCC 2 cut(s) 1169, 1358
BmrFI CCNGG 4 cut(s) 17, 1026, 1173, 1700
BmsI GCATC 2 cut(s) 1699, 1708
BmtI GCTAGC 1 cut(s) 1013
BplI GAGNNNNNCTC 8 cut(s) 29, 61, 494, 526, 509, 541, 734, 766
BpmI CTGGAG 1 cut(s) 102
Bpu10I CCTNAGC 1 cut(s) 1113
BpuEI CTTGAG 4 cut(s) 269, 867, 1364, 1465
Bsa29I ATCGAT 1 cut(s) 1641
BsaHI GRCGYC 1 cut(s) 1022
BsaI GGTCTC 2 cut(s) 561, 754
BsaJI CCNNGG 1 cut(s) 1698
BsaWI WCCGGW 2 cut(s) 271, 1522
BsaXI ACNNNNNCTCC 4 cut(s) 762, 792, 933, 963
Bsc4I CCNNNNNNNGG 5 cut(s) 441, 966, 1025, 1355, 1482
Bse1I ACTGG 1 cut(s) 1636
BseBI CCWGG 4 cut(s) 17, 1026, 1173, 1700
BseCI ATCGAT 1 cut(s) 1641
BseDI CCNNGG 1 cut(s) 1698
BseGI GGATG 4 cut(s) 499, 1132, 1771, 1792
BseLI CCNNNNNNNGG 5 cut(s) 441, 966, 1025, 1355, 1482
BseMII CTCAG 8 cut(s) 27, 60, 170, 765, 1359, 1391, 1491, 1670
BseNI ACTGG 1 cut(s) 1636
BseSI GKGCMC 1 cut(s) 1311
BseXI GCAGC 3 cut(s) 157, 316, 1226
BseYI CCCAGC 1 cut(s) 440
BshFI GGCC 3 cut(s) 53, 284, 989
BshVI ATCGAT 1 cut(s) 1641
BsiHKAI GWGCWC 1 cut(s) 1311
BsiSI CCGG 3 cut(s) 148, 272, 1523
BslI CCNNNNNNNGG 5 cut(s) 441, 966, 1025, 1355, 1482
BsmAI GTCTC 8 cut(s) 36, 529, 561, 754, 1181, 1364, 1496, 1802
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 3 cut(s) 53, 284, 989
Bso31I GGTCTC 2 cut(s) 561, 754
Bsp1286I GDGCHC 1 cut(s) 1311
Bsp143I GATC 6 cut(s) 86, 329, 641, 707, 1327, 1675
BspACI CCGC 6 cut(s) 168, 307, 897, 914, 1460, 1635
BspANI GGCC 3 cut(s) 53, 284, 989
BspCNI CTCAG 8 cut(s) 28, 59, 169, 764, 1360, 1390, 1492, 1671
BspDI ATCGAT 1 cut(s) 1641
BspMAI CTGCAG 2 cut(s) 175, 1746
BspMI ACCTGC 2 cut(s) 1030, 1525
BspOI GCTAGC 1 cut(s) 1013
BspPI GGATC 1 cut(s) 1683
BspTNI GGTCTC 2 cut(s) 561, 754
BsrI ACTGG 1 cut(s) 1636
BssECI CCNNGG 1 cut(s) 1698
BssMI GATC 6 cut(s) 86, 329, 641, 707, 1327, 1675
BssNI GRCGYC 1 cut(s) 1022
Bst2UI CCWGG 4 cut(s) 17, 1026, 1173, 1700
Bst4CI ACNGT 3 cut(s) 263, 853, 1276
Bst6I CTCTTC 3 cut(s) 248, 920, 1759
BstACI GRCGYC 1 cut(s) 1022
BstAPI GCANNNNNTGC 2 cut(s) 1694, 1718
BstC8I GCNNGC 1 cut(s) 1011
BstENI CCTNNNNNAGG 1 cut(s) 1480
BstF5I GGATG 4 cut(s) 499, 1132, 1771, 1792
BstHHI GCGC 1 cut(s) 1267
BstKTI GATC 6 cut(s) 89, 332, 644, 710, 1330, 1678
BstMAI GTCTC 8 cut(s) 36, 529, 561, 754, 1181, 1364, 1496, 1802
BstMBI GATC 6 cut(s) 86, 329, 641, 707, 1327, 1675
BstMWI GCNNNNNNNGC 3 cut(s) 1015, 1694, 1718
BstNI CCWGG 4 cut(s) 17, 1026, 1173, 1700
BstSCI CCNGG 4 cut(s) 15, 1024, 1171, 1698
BstSFI CTRYAG 2 cut(s) 171, 1742
BstSLI GKGCMC 1 cut(s) 1311
BstV1I GCAGC 3 cut(s) 157, 316, 1226
BstX2I RGATCY 5 cut(s) 86, 329, 707, 1327, 1675
BstYI RGATCY 5 cut(s) 86, 329, 707, 1327, 1675
Bsu15I ATCGAT 1 cut(s) 1641
BsuRI GGCC 3 cut(s) 53, 284, 989
BsuTUI ATCGAT 1 cut(s) 1641
BtsCI GGATG 4 cut(s) 499, 1132, 1771, 1792
BtsIMutI CAGTG 4 cut(s) 54, 622, 844, 1629
BveI ACCTGC 2 cut(s) 1030, 1525
Cac8I GCNNGC 1 cut(s) 1011
CaiI CAGNNNCTG 1 cut(s) 1172
CfoI GCGC 1 cut(s) 1267
Cfr13I GGNCC 2 cut(s) 1169, 1358
ClaI ATCGAT 1 cut(s) 1641
CseI GACGC 1 cut(s) 1030
CsiI ACCWGGT 1 cut(s) 15
Csp6I GTAC 2 cut(s) 389, 1340
CviAII CATG 2 cut(s) 1235, 1556
CviQI GTAC 2 cut(s) 389, 1340
DpnI GATC 6 cut(s) 88, 331, 643, 709, 1329, 1677
DpnII GATC 6 cut(s) 86, 329, 641, 707, 1327, 1675
DraI TTTAAA 1 cut(s) 367
DraIII CACNNNGTG 1 cut(s) 19
EaeI YGGCCR 1 cut(s) 282
Eam1104I CTCTTC 3 cut(s) 248, 920, 1759
EarI CTCTTC 3 cut(s) 248, 920, 1759
EciI GGCGGA 1 cut(s) 1650
Eco31I GGTCTC 2 cut(s) 561, 754
Eco47I GGWCC 2 cut(s) 1169, 1358
EcoNI CCTNNNNNAGG 1 cut(s) 1480
EcoO109I RGGNCCY 1 cut(s) 1169
EcoRI GAATTC 1 cut(s) 781
EcoRII CCWGG 4 cut(s) 15, 1024, 1171, 1698
FaeI CATG 2 cut(s) 1238, 1559
FalI AAGNNNNNCTT 2 cut(s) 1460, 1492
FatI CATG 2 cut(s) 1234, 1555
FauI CCCGC 1 cut(s) 1453
FblI GTMKAC 1 cut(s) 241
Fnu4HI GCNGC 4 cut(s) 171, 305, 308, 1240
FokI GGATG 4 cut(s) 506, 1139, 1778, 1799
Fsp4HI GCNGC 4 cut(s) 171, 305, 308, 1240
FspBI CTAG 4 cut(s) 372, 636, 699, 1010
FspI TGCGCA 1 cut(s) 1266
GlaI GCGC 1 cut(s) 1266
GluI GCNGC 4 cut(s) 171, 305, 308, 1240
GsaI CCCAGC 1 cut(s) 444
GsuI CTGGAG 1 cut(s) 102
HaeIII GGCC 3 cut(s) 53, 284, 989
HapII CCGG 3 cut(s) 148, 272, 1523
HgaI GACGC 1 cut(s) 1030
HhaI GCGC 1 cut(s) 1267
Hin1I GRCGYC 1 cut(s) 1022
Hin1II CATG 2 cut(s) 1238, 1559
Hin6I GCGC 1 cut(s) 1265
HinP1I GCGC 1 cut(s) 1265
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HindIII AAGCTT 2 cut(s) 228, 1730
HpaII CCGG 3 cut(s) 148, 272, 1523
HphI GGTGA 2 cut(s) 95, 829
Hpy166II GTNNAC 5 cut(s) 242, 676, 969, 1084, 1309
Hpy8I GTNNAC 5 cut(s) 242, 676, 969, 1084, 1309
Hpy99I CGWCG 1 cut(s) 1024
HpyAV CCTTC 6 cut(s) 207, 739, 857, 1404, 1442, 1486
HpyCH4III ACNGT 3 cut(s) 263, 853, 1276
HpyF10VI GCNNNNNNNGC 3 cut(s) 1015, 1694, 1718
Hsp92I GRCGYC 1 cut(s) 1022
Hsp92II CATG 2 cut(s) 1238, 1559
HspAI GCGC 1 cut(s) 1265
Kzo9I GATC 6 cut(s) 86, 329, 641, 707, 1327, 1675
LmnI GCTCC 3 cut(s) 274, 601, 770
Lsp1109I GCAGC 3 cut(s) 157, 316, 1226
LweI GCATC 2 cut(s) 1699, 1708
MabI ACCWGGT 1 cut(s) 15
MaeI CTAG 4 cut(s) 372, 636, 699, 1010
MaeIII GTNAC 2 cut(s) 257, 1490
MalI GATC 6 cut(s) 88, 331, 643, 709, 1329, 1677
MboI GATC 6 cut(s) 86, 329, 641, 707, 1327, 1675
MfeI CAATTG 1 cut(s) 1574
MflI RGATCY 5 cut(s) 86, 329, 707, 1327, 1675
MhlI GDGCHC 1 cut(s) 1311
MlyI GAGTC 7 cut(s) 38, 109, 531, 625, 1226, 1666, 1769
MmeI TCCRAC 3 cut(s) 321, 1427, 1743
MroXI GAANNNNTTC 1 cut(s) 1475
MseI TTAA 6 cut(s) 366, 1059, 1196, 1206, 1529, 1734
MspA1I CMGCKG 2 cut(s) 170, 307
MspI CCGG 3 cut(s) 148, 272, 1523
MspR9I CCNGG 4 cut(s) 17, 1026, 1173, 1700
MunI CAATTG 1 cut(s) 1574
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 4 cut(s) 17, 1026, 1173, 1700
MwoI GCNNNNNNNGC 3 cut(s) 1015, 1694, 1718
NdeII GATC 6 cut(s) 86, 329, 641, 707, 1327, 1675
NheI GCTAGC 1 cut(s) 1009
NlaIII CATG 2 cut(s) 1238, 1559
NsbI TGCGCA 1 cut(s) 1266
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PctI GAATGC 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 1475
PfeI GAWTC 9 cut(s) 176, 289, 400, 452, 466, 506, 542, 1428, 1638
PflMI CCANNNNNTGG 1 cut(s) 966
PkrI GCNGC 4 cut(s) 172, 306, 309, 1241
PleI GAGTC 7 cut(s) 38, 109, 530, 625, 1225, 1665, 1768
PpsI GAGTC 7 cut(s) 38, 109, 530, 625, 1225, 1665, 1768
PpuMI RGGWCCY 1 cut(s) 1169
Psp5II RGGWCCY 1 cut(s) 1169
Psp6I CCWGG 4 cut(s) 15, 1024, 1171, 1698
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 4 cut(s) 15, 1024, 1171, 1698
PspPI GGNCC 2 cut(s) 1169, 1358
PspPPI RGGWCCY 1 cut(s) 1169
PstI CTGCAG 2 cut(s) 175, 1746
PstNI CAGNNNCTG 1 cut(s) 1172
PsuI RGATCY 5 cut(s) 86, 329, 707, 1327, 1675
RsaI GTAC 2 cut(s) 390, 1341
RsaNI GTAC 2 cut(s) 389, 1340
SaqAI TTAA 6 cut(s) 366, 1059, 1196, 1206, 1529, 1734
SatI GCNGC 4 cut(s) 171, 305, 308, 1240
Sau3AI GATC 6 cut(s) 86, 329, 641, 707, 1327, 1675
Sau96I GGNCC 2 cut(s) 1169, 1358
ScaI AGTACT 1 cut(s) 1341
SchI GAGTC 7 cut(s) 38, 109, 531, 625, 1226, 1666, 1769
ScrFI CCNGG 4 cut(s) 17, 1026, 1173, 1700
SduI GDGCHC 1 cut(s) 1311
SexAI ACCWGGT 1 cut(s) 15
SfaNI GCATC 2 cut(s) 1699, 1708
SfcI CTRYAG 2 cut(s) 171, 1742
SinI GGWCC 2 cut(s) 1169, 1358
SmiI ATTTAAAT 1 cut(s) 367
SmlI CTYRAG 4 cut(s) 248, 882, 1343, 1480
SmoI CTYRAG 4 cut(s) 248, 882, 1343, 1480
SpeI ACTAGT 1 cut(s) 698
SsiI CCGC 6 cut(s) 168, 307, 897, 914, 1460, 1635
SspI AATATT 1 cut(s) 1108
SspMI CTAG 4 cut(s) 372, 636, 699, 1010
StyD4I CCNGG 4 cut(s) 15, 1024, 1171, 1698
SwaI ATTTAAAT 1 cut(s) 367
TaaI ACNGT 3 cut(s) 263, 853, 1276
TaqI TCGA 6 cut(s) 407, 416, 446, 575, 647, 1641
TatI WGTACW 1 cut(s) 1339
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 9 cut(s) 176, 289, 400, 452, 466, 506, 542, 1428, 1638
Tru1I TTAA 6 cut(s) 366, 1059, 1196, 1206, 1529, 1734
Tru9I TTAA 6 cut(s) 366, 1059, 1196, 1206, 1529, 1734
TscAI CASTG 4 cut(s) 54, 622, 844, 1636
TseI GCWGC 3 cut(s) 170, 304, 1239
TspDTI ATGAA 5 cut(s) 17, 510, 1110, 1659, 1815
TspRI CASTG 4 cut(s) 54, 622, 844, 1636
Van91I CCANNNNNTGG 1 cut(s) 966
VneI GTGCAC 1 cut(s) 1307
VpaK11BI GGWCC 2 cut(s) 1169, 1358
XagI CCTNNNNNAGG 1 cut(s) 1480
XapI RAATTY 6 cut(s) 206, 362, 726, 781, 1192, 1408
XbaI TCTAGA 1 cut(s) 371
XcmI CCANNNNNNNNNTGG 1 cut(s) 730
XmiI GTMKAC 1 cut(s) 241
XmnI GAANNNNTTC 1 cut(s) 1475
XspI CTAG 4 cut(s) 372, 636, 699, 1010
ZrmI AGTACT 1 cut(s) 1341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.