pycom01g07170
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0010457
Physical Location & Seq
Reverse (-)
7920297 .. 7928241
7945 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g07170.3

Sequence Viewer

Length: 1428 bp
ATGAGGAAAACGATTTCTATCGACGACTGCCGAACAGGCACAACTGTCCGAAGATCTCCCAGATTTCTTCAACCCCAGAAAACTCAAGAAGTAGAGCTATCCACGGCGATTCTCTGGAAAAGTCAGAGACTTGTTCGCCGGGAAAAGAGCGCTGCGGAGTCTGAAAATCCGAAAACCCCCAAACCCACAGCCAGAAGCAACCGTGTCGTACGTCCTTCGAGTCTCCCACTCAGCTCTAAGAAATCGAGTGAATCCCACCATGGGTTGAGGAGATGTCTGAGATTGAACAATGGGGTTGAGGGGTTTCAGAGTCTTAGACGTTCTTCAAGGATTTTGAACAAGCAGCTCATCCTCGTCCATGAAGGTAAGGGTCCCCCAAAGAAAATCTCGAAGAAATTAGGCGAATTGGAAAATGGGACGGGTAATTGCGGAAATTTCAATTCTGGGTCAAAAAATTGTCGAAGAAAATCTGTCAGGTTGTGTATTGAGCAATCTGTTGTGGATCAATGCACTGATAAGGCAACTGGTTCTCGATCTAAGAGTGGAAAAAAAAGGTCATTGAAGAAAGATGAGTTCTCAAGCGTTGGAAAAGATGGAGCTCGTATTGATTCATCAAAAAGAGTTATGAAAAAGTGCAAAATGCAAGAGATAGACGGTGGAAATAAAGAAACGACGGTTAGGAGGAAGAGAAAGAGGGAGGAGGAAGGGGGGAAGAGGGAGGAAGAAGGTGTTGGGGTTGTTCAAGGGTGGACAAAGGAACAAGAATTGGTATTGCAGAAAGCTTATTTGATAACGAAGCTAACACCCCTCTTCTGGAAGAAGGTTTCTAAACTGGTGCCTGGAAAATCTGCACAGGAGTGCTTTGATAGAGTCCACTCGGAGCATAGAACTCCACCTCAAACTCGTACCCGGTTGAAGGCAAACACACTAACAAATTTGTCTCCCTTTGGACAGTTTTCACTCTCTGCAAGTAAACTGCTTAAACCCACTGAGCCAAAGTCTAAAAGGCCAGCTTGCGGTAAACAGAGGAGTCATCTTGCCCAGAAAACTGTCCGAAAGTTGTTACAAAAACATCAGCAAGTGTACCAAGATTACGAGGGAGATCTATTTTCAGTGCTTGAGCCCAGTCTAGGTTCATCTACCGAGAGTCAAGCGAGTGTTATACCTTCTACCCCAAAGAATTTACAGGTAAAAAAGGGAATTCTTCAAAACCGTAGTCAAAGATCTTCAGGTCGTAAGAAGCAACTGTCGAGATTTAGTAGCTTATGTGGCAGACCTCTCGTTAGCCCCCCGGTACTGAAGAGGTCCGAAACAAGGTTTGGCATGAGAAATATATTGATCAATTACATACCAGGGAAGCAAAGAGAAAAGCTGCATCTACATGCACACAAAAATCCACTTCTGGAATTGATGAAGTGGATGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

476

Amino Acids

53.8

Weight (kDa)

10.56

Isoelectric Point (pI)

65.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53440 AT3G53440
fragaria_vesca FvH4_1g18920
malus_domestica MD01G1045600.v1.1 MD15G1306300.v1.1
prunus_persica Prupe.6G210300_v2.0.a1
pyrus_communis pycom01g07170 pycom15g27060 pycom15g27070
rosa_chinensis RchiOBHm_Chr2g0109931
rosa_laevigata RLG00000017770 RLG00000036544
rosa_multiflora Rmu_sc0005173.1_g000019
rosa_roxburghii Rroxscaffold_2G00133870
rosa_rugosa Rorug02G0163900
rosa_samantha Rh2AG215900 Rh2BG225900 Rh2CG218100 Rh2DG221400 Rh5DG403700
rosa_wichuraiana Rw2G016670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 835
AciI CCGC 3 cut(s) 155, 429, 1017
AclWI GGATC 1 cut(s) 510
AcsI RAATTY 4 cut(s) 433, 934, 1180, 1200
AcuI CTGAAG 2 cut(s) 1212, 1319
AfaI GTAC 4 cut(s) 210, 907, 1085, 1296
AfeI AGCGCT 1 cut(s) 151
AfiI CCNNNNNNNGG 6 cut(s) 261, 813, 916, 1016, 1130, 1314
AgsI TTSAA 9 cut(s) 71, 286, 327, 337, 439, 562, 743, 916, 1208
AjnI CCWGG 2 cut(s) 838, 1351
AjuI GAANNNNNNNTTGG 4 cut(s) 714, 746, 1302, 1334
AleI CACNNNNGTG 1 cut(s) 856
AluBI AGCT 9 cut(s) 97, 234, 346, 599, 782, 799, 1013, 1263, 1372
AluI AGCT 9 cut(s) 97, 234, 346, 599, 782, 799, 1013, 1263, 1372
Alw21I GWGCWC 1 cut(s) 601
Alw26I GTCTC 3 cut(s) 121, 227, 945
AlwI GGATC 1 cut(s) 510
Aor51HI AGCGCT 1 cut(s) 151
AoxI GGCC 1 cut(s) 1007
ApeKI GCWGC 3 cut(s) 152, 343, 1372
ApoI RAATTY 4 cut(s) 433, 934, 1180, 1200
ArsI GACNNNNNNTTYG 2 cut(s) 1201, 1233
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 2 cut(s) 371, 1305
AsuC2I CCSGG 3 cut(s) 140, 910, 1292
AvaII GGWCC 2 cut(s) 371, 1305
BanI GGYRCC 1 cut(s) 835
BanII GRGCYC 2 cut(s) 601, 1125
Bbv12I GWGCWC 1 cut(s) 601
BbvI GCAGC 3 cut(s) 139, 355, 1359
BccI CCATC 1 cut(s) 587
BceAI ACGGC 1 cut(s) 120
BcgI CGANNNNNNTGC 4 cut(s) 187, 221, 1261, 1295
BciT130I CCWGG 2 cut(s) 840, 1353
BclI TGATCA 1 cut(s) 1338
BcnI CCSGG 3 cut(s) 140, 910, 1292
BcoDI GTCTC 3 cut(s) 121, 227, 945
BfaI CTAG 1 cut(s) 1130
BfoI RGCGCY 1 cut(s) 153
BglI GCCNNNNNGGC 1 cut(s) 36
BglII AGATCT 3 cut(s) 53, 1102, 1223
BisI GCNGC 3 cut(s) 153, 344, 1373
BlsI GCNGC 3 cut(s) 154, 345, 1374
Bme1390I CCNGG 5 cut(s) 140, 840, 910, 1292, 1353
Bme18I GGWCC 2 cut(s) 371, 1305
BmgT120I GGNCC 2 cut(s) 371, 1305
BmiI GGNNCC 3 cut(s) 372, 373, 837
BmrFI CCNGG 5 cut(s) 140, 840, 910, 1292, 1353
BmrI ACTGGG 1 cut(s) 1119
BmsI GCATC 1 cut(s) 1384
BmuI ACTGGG 1 cut(s) 1119
BpuEI CTTGAG 3 cut(s) 69, 562, 1139
BpuMI CCSGG 3 cut(s) 140, 910, 1292
BsaBI GATNNNNATC 1 cut(s) 17
BsaJI CCNNGG 4 cut(s) 102, 259, 1290, 1352
Bsc4I CCNNNNNNNGG 6 cut(s) 261, 813, 916, 1016, 1130, 1314
Bse1I ACTGG 3 cut(s) 529, 837, 1125
Bse8I GATNNNNATC 1 cut(s) 17
BseBI CCWGG 2 cut(s) 840, 1353
BseDI CCNNGG 4 cut(s) 102, 259, 1290, 1352
BseGI GGATG 2 cut(s) 348, 1425
BseJI GATNNNNATC 1 cut(s) 17
BseLI CCNNNNNNNGG 6 cut(s) 261, 813, 916, 1016, 1130, 1314
BseMII CTCAG 3 cut(s) 244, 269, 981
BseNI ACTGG 3 cut(s) 529, 837, 1125
BseRI GAGGAG 3 cut(s) 283, 713, 1042
BseXI GCAGC 3 cut(s) 139, 355, 1359
BsgI GTGCAG 1 cut(s) 834
BshFI GGCC 1 cut(s) 1009
BshNI GGYRCC 1 cut(s) 835
BsiHKAI GWGCWC 1 cut(s) 601
BsiSI CCGG 3 cut(s) 139, 910, 1292
BsiWI CGTACG 1 cut(s) 208
BslFI GGGAC 2 cut(s) 357, 430
BslI CCNNNNNNNGG 6 cut(s) 261, 813, 916, 1016, 1130, 1314
BsmAI GTCTC 3 cut(s) 121, 227, 945
BsmFI GGGAC 2 cut(s) 357, 430
BsnI GGCC 1 cut(s) 1009
Bsp1286I GDGCHC 2 cut(s) 601, 1125
Bsp143I GATC 6 cut(s) 53, 502, 533, 1102, 1223, 1338
Bsp19I CCATGG 1 cut(s) 259
BspACI CCGC 3 cut(s) 155, 429, 1017
BspANI GGCC 1 cut(s) 1009
BspCNI CTCAG 3 cut(s) 243, 270, 982
BspLI GGNNCC 3 cut(s) 372, 373, 837
BspPI GGATC 1 cut(s) 510
BspT107I GGYRCC 1 cut(s) 835
BsrI ACTGG 3 cut(s) 529, 837, 1125
BssECI CCNNGG 4 cut(s) 102, 259, 1290, 1352
BssMI GATC 6 cut(s) 53, 502, 533, 1102, 1223, 1338
BssT1I CCWWGG 1 cut(s) 259
Bst2UI CCWGG 2 cut(s) 840, 1353
Bst4CI ACNGT 8 cut(s) 46, 203, 656, 676, 954, 1051, 1214, 1248
Bst6I CTCTTC 4 cut(s) 680, 707, 815, 1295
BstC8I GCNNGC 2 cut(s) 1011, 1015
BstDEI CTNAG 6 cut(s) 230, 237, 278, 314, 537, 990
BstDSI CCRYGG 2 cut(s) 102, 259
BstF5I GGATG 2 cut(s) 348, 1425
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 6 cut(s) 56, 505, 536, 1105, 1226, 1341
BstMAI GTCTC 3 cut(s) 121, 227, 945
BstMBI GATC 6 cut(s) 53, 502, 533, 1102, 1223, 1338
BstMWI GCNNNNNNNGC 2 cut(s) 36, 1269
BstNI CCWGG 2 cut(s) 840, 1353
BstNSI RCATGY 1 cut(s) 1385
BstSCI CCNGG 5 cut(s) 138, 838, 908, 1290, 1351
BstV1I GCAGC 3 cut(s) 139, 355, 1359
BstX2I RGATCY 3 cut(s) 53, 1102, 1223
BstYI RGATCY 3 cut(s) 53, 1102, 1223
BsuRI GGCC 1 cut(s) 1009
BtgI CCRYGG 2 cut(s) 102, 259
BtsCI GGATG 2 cut(s) 348, 1425
BtsIMutI CAGTG 3 cut(s) 510, 987, 1119
Cac8I GCNNGC 2 cut(s) 1011, 1015
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 2 cut(s) 371, 1305
Csp6I GTAC 4 cut(s) 209, 906, 1084, 1295
CviAII CATG 4 cut(s) 260, 359, 1324, 1382
CviQI GTAC 4 cut(s) 209, 906, 1084, 1295
DdeI CTNAG 6 cut(s) 230, 237, 278, 314, 537, 990
DpnI GATC 6 cut(s) 55, 504, 535, 1104, 1225, 1340
DpnII GATC 6 cut(s) 53, 502, 533, 1102, 1223, 1338
Eam1104I CTCTTC 4 cut(s) 680, 707, 815, 1295
EarI CTCTTC 4 cut(s) 680, 707, 815, 1295
Ecl136II GAGCTC 1 cut(s) 599
Eco130I CCWWGG 1 cut(s) 259
Eco24I GRGCYC 2 cut(s) 601, 1125
Eco47I GGWCC 2 cut(s) 371, 1305
Eco47III AGCGCT 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 599
Eco57I CTGAAG 2 cut(s) 1212, 1319
EcoICRI GAGCTC 1 cut(s) 599
EcoO109I RGGNCCY 1 cut(s) 371
EcoRI GAATTC 1 cut(s) 1200
EcoRII CCWGG 2 cut(s) 838, 1351
EcoT14I CCWWGG 1 cut(s) 259
EcoT38I GRGCYC 2 cut(s) 601, 1125
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 4 cut(s) 263, 362, 1327, 1385
FalI AAGNNNNNCTT 2 cut(s) 997, 1029
FaqI GGGAC 2 cut(s) 357, 430
FatI CATG 4 cut(s) 259, 358, 1323, 1381
FbaI TGATCA 1 cut(s) 1338
Fnu4HI GCNGC 3 cut(s) 153, 344, 1373
FokI GGATG 1 cut(s) 335
FriOI GRGCYC 2 cut(s) 601, 1125
Fsp4HI GCNGC 3 cut(s) 153, 344, 1373
FspBI CTAG 1 cut(s) 1130
GlaI GCGC 1 cut(s) 151
GluI GCNGC 3 cut(s) 153, 344, 1373
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 1 cut(s) 1009
HapII CCGG 3 cut(s) 139, 910, 1292
HhaI GCGC 1 cut(s) 152
Hin1II CATG 4 cut(s) 263, 362, 1327, 1385
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HindIII AAGCTT 1 cut(s) 780
HinfI GANTC 9 cut(s) 109, 158, 220, 251, 310, 608, 870, 1030, 1147
HpaII CCGG 3 cut(s) 139, 910, 1292
Hpy166II GTNNAC 5 cut(s) 750, 874, 974, 1022, 1084
Hpy188I TCNGA 9 cut(s) 50, 126, 163, 171, 279, 309, 880, 1055, 1309
Hpy188III TCNNGA 7 cut(s) 86, 115, 388, 531, 814, 1251, 1403
Hpy8I GTNNAC 5 cut(s) 750, 874, 974, 1022, 1084
Hpy99I CGWCG 2 cut(s) 26, 676
HpyAV CCTTC 7 cut(s) 225, 356, 698, 719, 814, 910, 1176
HpyCH4III ACNGT 8 cut(s) 46, 203, 656, 676, 954, 1051, 1214, 1248
HpyCH4IV ACGT 2 cut(s) 211, 319
HpyCH4V TGCA 8 cut(s) 510, 636, 643, 775, 851, 968, 1375, 1385
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 1269
HpyF3I CTNAG 6 cut(s) 230, 237, 278, 314, 537, 990
HpySE526I ACGT 2 cut(s) 211, 319
Hsp92II CATG 4 cut(s) 263, 362, 1327, 1385
HspAI GCGC 1 cut(s) 150
KflI GGGWCCC 1 cut(s) 371
Ksp22I TGATCA 1 cut(s) 1338
Kzo9I GATC 6 cut(s) 53, 502, 533, 1102, 1223, 1338
LmnI GCTCC 2 cut(s) 596, 880
Lsp1109I GCAGC 3 cut(s) 139, 355, 1359
LweI GCATC 1 cut(s) 1384
MaeI CTAG 1 cut(s) 1130
MaeII ACGT 2 cut(s) 211, 319
MaeIII GTNAC 1 cut(s) 1062
MalI GATC 6 cut(s) 55, 504, 535, 1104, 1225, 1340
MboI GATC 6 cut(s) 53, 502, 533, 1102, 1223, 1338
MflI RGATCY 3 cut(s) 53, 1102, 1223
MhlI GDGCHC 2 cut(s) 601, 1125
MlyI GAGTC 6 cut(s) 167, 229, 319, 879, 1039, 1156
MmeI TCCRAC 1 cut(s) 565
MseI TTAA 1 cut(s) 981
MslI CAYNNNNRTG 2 cut(s) 856, 1380
MspI CCGG 3 cut(s) 139, 910, 1292
MspR9I CCNGG 5 cut(s) 140, 840, 910, 1292, 1353
MvaI CCWGG 2 cut(s) 840, 1353
MwoI GCNNNNNNNGC 2 cut(s) 36, 1269
NciI CCSGG 3 cut(s) 140, 910, 1292
NcoI CCATGG 1 cut(s) 259
NdeII GATC 6 cut(s) 53, 502, 533, 1102, 1223, 1338
NlaIII CATG 4 cut(s) 263, 362, 1327, 1385
NlaIV GGNNCC 3 cut(s) 372, 373, 837
NspI RCATGY 1 cut(s) 1385
OliI CACNNNNGTG 1 cut(s) 856
PfeI GAWTC 3 cut(s) 109, 251, 608
Pfl23II CGTACG 1 cut(s) 208
PkrI GCNGC 3 cut(s) 154, 345, 1374
PleI GAGTC 6 cut(s) 166, 228, 318, 878, 1038, 1155
PpsI GAGTC 6 cut(s) 166, 228, 318, 878, 1038, 1155
PpuMI RGGWCCY 1 cut(s) 371
Psp124BI GAGCTC 1 cut(s) 601
Psp5II RGGWCCY 1 cut(s) 371
Psp6I CCWGG 2 cut(s) 838, 1351
PspGI CCWGG 2 cut(s) 838, 1351
PspLI CGTACG 1 cut(s) 208
PspN4I GGNNCC 3 cut(s) 372, 373, 837
PspPI GGNCC 2 cut(s) 371, 1305
PspPPI RGGWCCY 1 cut(s) 371
PsuI RGATCY 3 cut(s) 53, 1102, 1223
RsaI GTAC 4 cut(s) 210, 907, 1085, 1296
RsaNI GTAC 4 cut(s) 209, 906, 1084, 1295
RseI CAYNNNNRTG 2 cut(s) 856, 1380
SacI GAGCTC 1 cut(s) 601
SaqAI TTAA 1 cut(s) 981
SatI GCNGC 3 cut(s) 153, 344, 1373
Sau3AI GATC 6 cut(s) 53, 502, 533, 1102, 1223, 1338
Sau96I GGNCC 2 cut(s) 371, 1305
SchI GAGTC 6 cut(s) 167, 229, 319, 879, 1039, 1156
ScrFI CCNGG 5 cut(s) 140, 840, 910, 1292, 1353
SduI GDGCHC 2 cut(s) 601, 1125
SfaNI GCATC 1 cut(s) 1384
SinI GGWCC 2 cut(s) 371, 1305
SmiMI CAYNNNNRTG 2 cut(s) 856, 1380
SmlI CTYRAG 3 cut(s) 84, 577, 1118
SmoI CTYRAG 3 cut(s) 84, 577, 1118
SsiI CCGC 3 cut(s) 155, 429, 1017
SspMI CTAG 1 cut(s) 1130
SstI GAGCTC 1 cut(s) 601
StyD4I CCNGG 5 cut(s) 138, 838, 908, 1290, 1351
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 8 cut(s) 46, 203, 656, 676, 954, 1051, 1214, 1248
TaiI ACGT 2 cut(s) 214, 322
TaqI TCGA 7 cut(s) 21, 218, 245, 389, 460, 532, 1250
TfiI GAWTC 3 cut(s) 109, 251, 608
Tru1I TTAA 1 cut(s) 981
Tru9I TTAA 1 cut(s) 981
TscAI CASTG 3 cut(s) 517, 994, 1119
TseI GCWGC 3 cut(s) 152, 343, 1372
TspDTI ATGAA 5 cut(s) 375, 600, 641, 1125, 1427
TspRI CASTG 3 cut(s) 517, 994, 1119
VpaK11BI GGWCC 2 cut(s) 371, 1305
XapI RAATTY 4 cut(s) 433, 934, 1180, 1200
XceI RCATGY 1 cut(s) 1385
XspI CTAG 1 cut(s) 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.