Rorug02G0163900
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010457
Physical Location & Seq
Forward (+)
14603839 .. 14604552
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0163900.1

Sequence Viewer

Length: 714 bp
ATGCCGTCAGACTCGGGCGACCCGAACAACCGGAGACCCACAAAGGCGCAGAGTCTGGGAGCTCCGCCGCCGGAGCAGGAGCACCTCCCTTGTCCCCGCTGCGAGTCCACCAACACCAAGTTCTGCTACTACAACAACTACAACTTCTCTCAGCCTCGTCACTTCTGCAAGTCCTGCCGCCGCTACTGGACCCACGGTGGGACACTCCGTGACATCCCCGTCGGCGGCGGCAGCCGCAAGAACGCCAAGCGCTCCCGCACCTCCTCCACCGGTTCCATGGTCTCTTCTGCATCTGATCACGCCTTGCCGGCCACCCCGGTTTTTGTGCCGGTATCGGCTGGACAAGGCGGGGCCGGGCAGTTCGGCGGTTGCGGTGGCGGTGTGAAGGGGAATGTGAGTAATGGAGGGAGCTTTACTTCTCTGCTCAACACTCAGCCCGGGTTTTTGGCGCTGGGAGGATTTGGGCTTGGGCTTGCGACTGGGTTTGAGGAGATGGGCTTTGGGTTCGGGAGAGCGATGTGGCCTTTTCCCGGCGTGGGGTCGGATGGTGGTGCTGGAATCGGGGCGAACGGCGTGTCGCATGGGATGATGAACGCGTGGCAGTTCGAGAATGGCGAGACTGGTGGGCTTGTTAACGTTGGTCTCGGTGGTGGTGGAGAGTTCTGTTCTTGGCCAGAGCTGGCAATTTCTACTCCTGGTAATGGTCTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

237

Amino Acids

24.37

Weight (kDa)

8.73

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 27 - 83 1.1e-33 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53440 AT3G53440
fragaria_vesca FvH4_1g18920
malus_domestica MD01G1045600.v1.1 MD15G1306300.v1.1
prunus_persica Prupe.6G210300_v2.0.a1
pyrus_communis pycom01g07170 pycom15g27060 pycom15g27070
rosa_chinensis RchiOBHm_Chr2g0109931
rosa_laevigata RLG00000017770 RLG00000036544
rosa_multiflora Rmu_sc0005173.1_g000019
rosa_roxburghii Rroxscaffold_2G00133870
rosa_rugosa Rorug02G0163900
rosa_samantha Rh2AG215900 Rh2BG225900 Rh2CG218100 Rh2DG221400 Rh5DG403700
rosa_wichuraiana Rw2G016670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AccII CGCG 1 cut(s) 596
AclI AACGTT 1 cut(s) 636
AcoI YGGCCR 2 cut(s) 309, 671
AdeI CACNNNGTG 1 cut(s) 209
AfeI AGCGCT 1 cut(s) 251
AfiI CCNNNNNNNGG 6 cut(s) 198, 224, 530, 536, 537, 701
AflIII ACRYGT 1 cut(s) 594
AgeI ACCGGT 1 cut(s) 269
AjnI CCWGG 1 cut(s) 694
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
AluBI AGCT 3 cut(s) 62, 411, 679
AluI AGCT 3 cut(s) 62, 411, 679
Alw21I GWGCWC 2 cut(s) 64, 84
Alw26I GTCTC 5 cut(s) 28, 286, 611, 647, 710
AlwNI CAGNNNCTG 1 cut(s) 55
Ama87I CYCGRG 2 cut(s) 13, 437
Aor51HI AGCGCT 1 cut(s) 251
AoxI GGCC 4 cut(s) 309, 351, 521, 671
ApeKI GCWGC 2 cut(s) 99, 231
ArsI GACNNNNNNTTYG 2 cut(s) 560, 592
AsiGI ACCGGT 1 cut(s) 269
AspLEI GCGC 3 cut(s) 49, 252, 451
AspS9I GGNCC 2 cut(s) 189, 351
AsuC2I CCSGG 5 cut(s) 317, 355, 438, 439, 531
AvaI CYCGRG 2 cut(s) 13, 437
AvaII GGWCC 1 cut(s) 189
BalI TGGCCA 1 cut(s) 673
BanII GRGCYC 1 cut(s) 64
Bbv12I GWGCWC 2 cut(s) 64, 84
BbvI GCAGC 2 cut(s) 86, 243
BccI CCATC 2 cut(s) 487, 539
BceAI ACGGC 1 cut(s) 586
BciT130I CCWGG 1 cut(s) 696
BclI TGATCA 1 cut(s) 295
BcnI CCSGG 5 cut(s) 317, 355, 438, 439, 531
BcoDI GTCTC 5 cut(s) 28, 286, 611, 647, 710
BfoI RGCGCY 2 cut(s) 253, 452
BglI GCCNNNNNGGC 1 cut(s) 308
BisI GCNGC 8 cut(s) 68, 100, 178, 181, 226, 229, 232, 235
BlsI GCNGC 8 cut(s) 69, 101, 179, 182, 227, 230, 233, 236
Bme1390I CCNGG 6 cut(s) 317, 355, 438, 439, 531, 696
Bme18I GGWCC 1 cut(s) 189
BmeT110I CYCGRG 2 cut(s) 13, 437
BmgT120I GGNCC 2 cut(s) 189, 351
BmiI GGNNCC 3 cut(s) 191, 274, 352
BmrFI CCNGG 6 cut(s) 317, 355, 438, 439, 531, 696
BmrI ACTGGG 1 cut(s) 489
BmsI GCATC 1 cut(s) 299
BmuI ACTGGG 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 692
BpuMI CCSGG 5 cut(s) 317, 355, 438, 439, 531
BsaI GGTCTC 4 cut(s) 28, 286, 647, 710
BsaJI CCNNGG 4 cut(s) 193, 276, 315, 437
BsaWI WCCGGW 2 cut(s) 30, 269
Bsc4I CCNNNNNNNGG 6 cut(s) 198, 224, 530, 536, 537, 701
Bse118I RCCGGY 3 cut(s) 269, 307, 328
Bse1I ACTGG 3 cut(s) 191, 484, 625
BseBI CCWGG 1 cut(s) 696
BseDI CCNNGG 4 cut(s) 193, 276, 315, 437
BseGI GGATG 3 cut(s) 213, 550, 591
BseLI CCNNNNNNNGG 6 cut(s) 198, 224, 530, 536, 537, 701
BseMII CTCAG 2 cut(s) 164, 446
BseNI ACTGG 3 cut(s) 191, 484, 625
BseRI GAGGAG 2 cut(s) 253, 503
BseXI GCAGC 2 cut(s) 86, 243
BseYI CCCAGC 1 cut(s) 451
Bsh1236I CGCG 1 cut(s) 596
BshFI GGCC 4 cut(s) 311, 353, 523, 673
BshTI ACCGGT 1 cut(s) 269
BsiHKAI GWGCWC 2 cut(s) 64, 84
BsiHKCI CYCGRG 2 cut(s) 13, 437
BsiSI CCGG 9 cut(s) 31, 71, 270, 308, 317, 329, 354, 438, 531
BslFI GGGAC 2 cut(s) 78, 214
BslI CCNNNNNNNGG 6 cut(s) 198, 224, 530, 536, 537, 701
BsmAI GTCTC 5 cut(s) 28, 286, 611, 647, 710
BsmFI GGGAC 2 cut(s) 78, 214
BsnI GGCC 4 cut(s) 311, 353, 523, 673
Bso31I GGTCTC 4 cut(s) 28, 286, 647, 710
BsoBI CYCGRG 2 cut(s) 13, 437
Bsp1286I GDGCHC 2 cut(s) 64, 84
Bsp143I GATC 1 cut(s) 295
Bsp19I CCATGG 1 cut(s) 276
BspANI GGCC 4 cut(s) 311, 353, 523, 673
BspCNI CTCAG 2 cut(s) 163, 445
BspFNI CGCG 1 cut(s) 596
BspLI GGNNCC 3 cut(s) 191, 274, 352
BspTNI GGTCTC 4 cut(s) 28, 286, 647, 710
BsrFI RCCGGY 3 cut(s) 269, 307, 328
BsrI ACTGG 3 cut(s) 191, 484, 625
BssAI RCCGGY 3 cut(s) 269, 307, 328
BssECI CCNNGG 4 cut(s) 193, 276, 315, 437
BssMI GATC 1 cut(s) 295
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 696
Bst4CI ACNGT 1 cut(s) 197
Bst6I CTCTTC 1 cut(s) 289
BstAPI GCANNNNNTGC 1 cut(s) 174
BstC8I GCNNGC 3 cut(s) 309, 474, 681
BstDEI CTNAG 2 cut(s) 150, 432
BstDSI CCRYGG 2 cut(s) 193, 276
BstF5I GGATG 3 cut(s) 213, 550, 591
BstFNI CGCG 1 cut(s) 596
BstH2I RGCGCY 2 cut(s) 253, 452
BstHHI GCGC 3 cut(s) 49, 252, 451
BstKTI GATC 1 cut(s) 298
BstMAI GTCTC 5 cut(s) 28, 286, 611, 647, 710
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 5 cut(s) 73, 174, 231, 234, 308
BstNI CCWGG 1 cut(s) 696
BstSCI CCNGG 6 cut(s) 315, 353, 436, 437, 529, 694
BstUI CGCG 1 cut(s) 596
BstV1I GCAGC 2 cut(s) 86, 243
BsuRI GGCC 4 cut(s) 311, 353, 523, 673
BtgI CCRYGG 2 cut(s) 193, 276
BtgZI GCGATG 1 cut(s) 530
BtsCI GGATG 3 cut(s) 213, 550, 591
Cac8I GCNNGC 3 cut(s) 309, 474, 681
CaiI CAGNNNCTG 1 cut(s) 55
CfoI GCGC 3 cut(s) 49, 252, 451
Cfr10I RCCGGY 3 cut(s) 269, 307, 328
Cfr13I GGNCC 2 cut(s) 189, 351
Cfr9I CCCGGG 1 cut(s) 437
CspAI ACCGGT 1 cut(s) 269
CviAII CATG 2 cut(s) 277, 581
DdeI CTNAG 2 cut(s) 150, 432
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
DraIII CACNNNGTG 1 cut(s) 209
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
EaeI YGGCCR 2 cut(s) 309, 671
Eam1104I CTCTTC 1 cut(s) 289
EarI CTCTTC 1 cut(s) 289
EciI GGCGGA 1 cut(s) 54
Ecl136II GAGCTC 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 64
Eco31I GGTCTC 4 cut(s) 28, 286, 647, 710
Eco47I GGWCC 1 cut(s) 189
Eco47III AGCGCT 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 62
Eco88I CYCGRG 2 cut(s) 13, 437
EcoICRI GAGCTC 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 694
EcoT14I CCWWGG 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 64
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 2 cut(s) 280, 584
FaiI YATR 2 cut(s) 278, 582
FaqI GGGAC 2 cut(s) 78, 214
FatI CATG 2 cut(s) 276, 580
FauI CCCGC 3 cut(s) 104, 263, 341
FbaI TGATCA 1 cut(s) 295
Fnu4HI GCNGC 8 cut(s) 68, 100, 178, 181, 226, 229, 232, 235
FokI GGATG 3 cut(s) 200, 557, 598
FriOI GRGCYC 1 cut(s) 64
Fsp4HI GCNGC 8 cut(s) 68, 100, 178, 181, 226, 229, 232, 235
GlaI GCGC 3 cut(s) 48, 251, 450
GluI GCNGC 8 cut(s) 68, 100, 178, 181, 226, 229, 232, 235
GsaI CCCAGC 1 cut(s) 455
HaeII RGCGCY 2 cut(s) 253, 452
HaeIII GGCC 4 cut(s) 311, 353, 523, 673
HapII CCGG 9 cut(s) 31, 71, 270, 308, 317, 329, 354, 438, 531
HhaI GCGC 3 cut(s) 49, 252, 451
Hin1II CATG 2 cut(s) 280, 584
Hin6I GCGC 3 cut(s) 47, 250, 449
HinP1I GCGC 3 cut(s) 47, 250, 449
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HinfI GANTC 4 cut(s) 11, 52, 104, 558
HpaI GTTAAC 1 cut(s) 634
HpaII CCGG 9 cut(s) 31, 71, 270, 308, 317, 329, 354, 438, 531
Hpy166II GTNNAC 2 cut(s) 108, 634
Hpy188I TCNGA 3 cut(s) 10, 295, 544
Hpy188III TCNNGA 2 cut(s) 508, 607
Hpy8I GTNNAC 2 cut(s) 108, 634
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4IV ACGT 1 cut(s) 636
HpyCH4V TGCA 2 cut(s) 168, 290
HpyF10VI GCNNNNNNNGC 5 cut(s) 73, 174, 231, 234, 308
HpyF3I CTNAG 2 cut(s) 150, 432
HpySE526I ACGT 1 cut(s) 636
Hsp92II CATG 2 cut(s) 280, 584
HspAI GCGC 3 cut(s) 47, 250, 449
KroI GCCGGC 1 cut(s) 307
KroNI GCCGGC 1 cut(s) 309
Ksp22I TGATCA 1 cut(s) 295
KspAI GTTAAC 1 cut(s) 634
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 6 cut(s) 59, 67, 73, 79, 257, 408
Lsp1109I GCAGC 2 cut(s) 86, 243
LweI GCATC 1 cut(s) 299
MaeII ACGT 1 cut(s) 636
MaeIII GTNAC 2 cut(s) 158, 209
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 1 cut(s) 276
MhlI GDGCHC 2 cut(s) 64, 84
MlsI TGGCCA 1 cut(s) 673
MluCI AATT 1 cut(s) 684
MluI ACGCGT 1 cut(s) 594
MluNI TGGCCA 1 cut(s) 673
MlyI GAGTC 3 cut(s) 5, 61, 113
MmeI TCCRAC 1 cut(s) 522
MnlI CCTC 7 cut(s) 95, 165, 271, 274, 398, 449, 481
Mox20I TGGCCA 1 cut(s) 673
MroNI GCCGGC 1 cut(s) 307
MscI TGGCCA 1 cut(s) 673
MseI TTAA 1 cut(s) 633
Msp20I TGGCCA 1 cut(s) 673
MspA1I CMGCKG 1 cut(s) 99
MspI CCGG 9 cut(s) 31, 71, 270, 308, 317, 329, 354, 438, 531
MspR9I CCNGG 6 cut(s) 317, 355, 438, 439, 531, 696
MvaI CCWGG 1 cut(s) 696
MvnI CGCG 1 cut(s) 596
MwoI GCNNNNNNNGC 5 cut(s) 73, 174, 231, 234, 308
NaeI GCCGGC 1 cut(s) 309
NciI CCSGG 5 cut(s) 317, 355, 438, 439, 531
NcoI CCATGG 1 cut(s) 276
NdeII GATC 1 cut(s) 295
NgoMIV GCCGGC 1 cut(s) 307
NlaIII CATG 2 cut(s) 280, 584
NlaIV GGNNCC 3 cut(s) 191, 274, 352
NmuCI GTSAC 2 cut(s) 158, 209
PcsI WCGNNNNNNNCGW 2 cut(s) 20, 612
PdiI GCCGGC 1 cut(s) 309
PfeI GAWTC 1 cut(s) 558
PinAI ACCGGT 1 cut(s) 269
PkrI GCNGC 8 cut(s) 69, 101, 179, 182, 227, 230, 233, 236
PleI GAGTC 3 cut(s) 5, 60, 112
PpsI GAGTC 3 cut(s) 5, 60, 112
Psp124BI GAGCTC 1 cut(s) 64
Psp1406I AACGTT 1 cut(s) 636
Psp6I CCWGG 1 cut(s) 694
PspFI CCCAGC 1 cut(s) 451
PspGI CCWGG 1 cut(s) 694
PspN4I GGNNCC 3 cut(s) 191, 274, 352
PspPI GGNCC 2 cut(s) 189, 351
PstNI CAGNNNCTG 1 cut(s) 55
SacI GAGCTC 1 cut(s) 64
SaqAI TTAA 1 cut(s) 633
SatI GCNGC 8 cut(s) 68, 100, 178, 181, 226, 229, 232, 235
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 2 cut(s) 189, 351
SchI GAGTC 3 cut(s) 5, 61, 113
ScrFI CCNGG 6 cut(s) 317, 355, 438, 439, 531, 696
SduI GDGCHC 2 cut(s) 64, 84
SetI ASST 6 cut(s) 64, 87, 263, 413, 639, 681
SfaNI GCATC 1 cut(s) 299
SinI GGWCC 1 cut(s) 189
SmaI CCCGGG 1 cut(s) 439
SmlI CTYRAG 1 cut(s) 707
SmoI CTYRAG 1 cut(s) 707
Sse9I AATT 1 cut(s) 684
SstI GAGCTC 1 cut(s) 64
StyD4I CCNGG 6 cut(s) 315, 353, 436, 437, 529, 694
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 1 cut(s) 197
TaiI ACGT 1 cut(s) 639
TaqI TCGA 1 cut(s) 606
TasI AATT 1 cut(s) 684
TauI GCSGC 6 cut(s) 70, 180, 183, 228, 231, 237
TfiI GAWTC 1 cut(s) 558
Tru1I TTAA 1 cut(s) 633
Tru9I TTAA 1 cut(s) 633
TseFI GTSAC 2 cut(s) 158, 209
TseI GCWGC 2 cut(s) 99, 231
Tsp45I GTSAC 2 cut(s) 158, 209
TspDTI ATGAA 1 cut(s) 605
TspGWI ACGGA 1 cut(s) 197
TspMI CCCGGG 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 189
XcmI CCANNNNNNNNNTGG 1 cut(s) 274
XmaI CCCGGG 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.