MD15G1306300.v1.1
MYB Family

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
30282653 .. 30287315
4663 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1306300.v1.1.491

Sequence Viewer

Length: 1581 bp
ATGCCCGTGAGAGCCTCCGTAGCCAAGGCAGCACAACAGAGCACAACTCTCCGAAGGTCTCCTAGATTTCTCCACCACCAGAAAACTCAAGAACCAGAGCTGTCCACCGCCACTCTCCCGAAATCTCAGAGACTTGTCTGCCTGGAAAAGAGCGCTGCGGAGTCTGAAAACCCGAGAACCCCCAAATCCACAGCCAGAAGCAACCGTGTCGTACGTTCATTGAGTCTCCCACTTAGCTCTAAGAATTCGAGTGAATCTCACGATGGGCCGAGAAGATCTCCGAGATTGAACAATGGGGTTGAGGCGTTTCAGAGGCTTAGACGTTCTTCAAGGATTTTGAACAAGCAGCTCGTCCTTGTTGATGAAGGTAAGGGTCCCTCAAAACAAATATCGAAGAAATTGGGCAAATTGGAAAATGGGTCGGGTAATTGCGGAAATTTGAGTTCTGGGTCAGCAAAATGTCGAAGAAAATCTGTCAGGTTCTGTATTGAGCAATCTATTGTGAATCAATGCACTGATAAGGCAACTGGGTCTAGATCTAAGAGTGGAAAAAATAGGTCATTGAAGAAAGAGGAGTTCTCAAGTGTTGGAAAAGATGGAGCTTGTATTGATTCATCTGAAAGAGTTTCGAAAGAGTGCAAAATGCAAGAGATAGATGGTGTAAATAAAGAAGTGGGGGTTAGGAGGAAGAGAAAGAGGGAGGAGGAAAATGGAAAGAGGGAGGAAGAAGGTGTTGGGGTTGTTCAAGGGTGGACAAAGGAACAAGAATTCGCATTGCAGAGAGCTTATTTAATAGCAAAGCCAACACCCTACTTCTGGAAGAAGGTTTCCAAACTGGTGCCTGGGAAATCTGCACAGGAGTGCTTTGATAGAGTCCATTCTGAGCATAGAACTCCACCTCAACCTCATACCCGGTCGAGGGCAAGCACATTAACAAATTCATCCCCCCTTGGACAGTTTTCACTCTCTGCAAGTAAACTGCTTAAACCCAGTGAGCCAAAGTCTAAAAGGCAAGAATGCAGTAAGCAGAGGAGGCATGTTGCCCAGAAAACAGTCCGACAATTATTACAAAAACATAATCAAGTGTACCAAGATTATGAGGGAGATCTATTTTGGGTACTCGAGCCCAGTCTAGGTTCACCTAGTGAGAGTCATGCGAGTGTTATACCTTCTACCCCAAAAAACTTACAGGAAAAGAAGAAAATTCTTCAGAATCGCAGTCAAAGATCTTCTTCAGGTCATAAGAAGCGGCTGTTGAGATTTAGTAGCTCATGTGGTAAACCTCTCGTTAGCCCCCGGGTATTGAAGCAAGTCAGAAACAAGGTCCGGCATGAGAAATATATAGACCAATTACATACCAGGGAAGCGAAGAGAAAAGCAGCATCTACGCGCACTCAGCAATCCACTTCTGGAATTGGTGAAGTGGATGCGGTGAGAACTGCAAAAATTGCCCTGGTTTCTGATGCAAGAGATGCTATCAATAAACTCCAACATCTGCAGGCCAATGTCACCGGCGACTCTTCTGATTTCGACGATGGTGGCATTATAAGTGATGACGAGGAGGGTGAAGATGATACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

527

Amino Acids

58.7

Weight (kDa)

10.07

Isoelectric Point (pI)

68.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010457)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1547
AccB1I GGYRCC 1 cut(s) 838
AccII CGCG 1 cut(s) 1390
AciI CCGC 5 cut(s) 108, 158, 432, 1249, 1430
AcsI RAATTY 5 cut(s) 244, 436, 767, 937, 1203
AcuI CTGAAG 2 cut(s) 1193, 1218
AdeI CACNNNGTG 1 cut(s) 1145
AfaI GTAC 3 cut(s) 213, 1088, 1119
AfeI AGCGCT 1 cut(s) 154
AfiI CCNNNNNNNGG 4 cut(s) 816, 918, 919, 1133
AgsI TTSAA 6 cut(s) 289, 330, 340, 565, 746, 1306
AjnI CCWGG 4 cut(s) 141, 841, 1358, 1452
AjuI GAANNNNNNNTTGG 2 cut(s) 717, 749
AleI CACNNNNGTG 1 cut(s) 859
AluBI AGCT 6 cut(s) 100, 237, 349, 602, 785, 1269
AluI AGCT 6 cut(s) 100, 237, 349, 602, 785, 1269
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 3 cut(s) 63, 124, 230
AlwNI CAGNNNCTG 1 cut(s) 483
Ama87I CYCGRG 3 cut(s) 172, 1121, 1296
Aor51HI AGCGCT 1 cut(s) 154
AoxI GGCC 2 cut(s) 266, 1500
ApeKI GCWGC 4 cut(s) 29, 155, 346, 1379
ApoI RAATTY 5 cut(s) 244, 436, 767, 937, 1203
AspLEI GCGC 2 cut(s) 155, 1392
AspS9I GGNCC 3 cut(s) 266, 374, 1324
AsuC2I CCSGG 3 cut(s) 913, 1297, 1298
AsuHPI GGTGA 5 cut(s) 1131, 1430, 1444, 1501, 1577
AsuII TTCGAA 1 cut(s) 629
AvaI CYCGRG 3 cut(s) 172, 1121, 1296
AvaII GGWCC 2 cut(s) 374, 1324
BanI GGYRCC 1 cut(s) 838
BanII GRGCYC 1 cut(s) 1128
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 4 cut(s) 41, 142, 358, 1391
BccI CCATC 4 cut(s) 257, 590, 650, 1529
BcgI CGANNNNNNTGC 2 cut(s) 190, 224
BciT130I CCWGG 4 cut(s) 143, 843, 1360, 1454
BcnI CCSGG 3 cut(s) 913, 1297, 1298
BcoDI GTCTC 3 cut(s) 63, 124, 230
BfaI CTAG 4 cut(s) 63, 534, 1133, 1143
BfmI CTRYAG 1 cut(s) 1496
BfoI RGCGCY 1 cut(s) 156
BglII AGATCT 4 cut(s) 275, 536, 1105, 1226
BisI GCNGC 5 cut(s) 30, 156, 347, 1250, 1380
BlsI GCNGC 5 cut(s) 31, 157, 348, 1251, 1381
Bme1390I CCNGG 7 cut(s) 143, 843, 913, 1297, 1298, 1360, 1454
Bme18I GGWCC 2 cut(s) 374, 1324
BmeT110I CYCGRG 3 cut(s) 172, 1121, 1296
BmgT120I GGNCC 3 cut(s) 266, 374, 1324
BmiI GGNNCC 3 cut(s) 375, 376, 840
BmrFI CCNGG 7 cut(s) 143, 843, 913, 1297, 1298, 1360, 1454
BmrI ACTGGG 3 cut(s) 537, 984, 1122
BmsI GCATC 4 cut(s) 1391, 1417, 1453, 1462
BmuI ACTGGG 3 cut(s) 537, 984, 1122
BplI GAGNNNNNCTC 8 cut(s) 31, 63, 241, 273, 262, 294, 563, 595
Bpu14I TTCGAA 1 cut(s) 629
BpuEI CTTGAG 2 cut(s) 72, 565
BpuMI CCSGG 3 cut(s) 913, 1297, 1298
BsaI GGTCTC 1 cut(s) 63
BsaJI CCNNGG 7 cut(s) 24, 842, 949, 1295, 1296, 1359, 1452
Bsc4I CCNNNNNNNGG 4 cut(s) 816, 918, 919, 1133
Bse118I RCCGGY 1 cut(s) 1511
Bse1I ACTGG 4 cut(s) 532, 840, 990, 1128
Bse3DI GCAATG 1 cut(s) 773
BseBI CCWGG 4 cut(s) 143, 843, 1360, 1454
BseDI CCNNGG 7 cut(s) 24, 842, 949, 1295, 1296, 1359, 1452
BseGI GGATG 2 cut(s) 941, 1432
BseLI CCNNNNNNNGG 4 cut(s) 816, 918, 919, 1133
BseMI GCAATG 1 cut(s) 773
BseMII CTCAG 3 cut(s) 140, 873, 1409
BseNI ACTGG 4 cut(s) 532, 840, 990, 1128
BseRI GAGGAG 4 cut(s) 587, 716, 1045, 1574
BseXI GCAGC 4 cut(s) 41, 142, 358, 1391
BsgI GTGCAG 1 cut(s) 837
Bsh1236I CGCG 1 cut(s) 1390
Bsh1285I CGRYCG 1 cut(s) 917
BshFI GGCC 2 cut(s) 268, 1502
BshNI GGYRCC 1 cut(s) 838
BsiEI CGRYCG 1 cut(s) 917
BsiHKAI GWGCWC 1 cut(s) 44
BsiHKCI CYCGRG 3 cut(s) 172, 1121, 1296
BsiSI CCGG 4 cut(s) 913, 1297, 1327, 1512
BsiWI CGTACG 1 cut(s) 211
BslFI GGGAC 1 cut(s) 360
BslI CCNNNNNNNGG 4 cut(s) 816, 918, 919, 1133
BsmAI GTCTC 3 cut(s) 63, 124, 230
BsmFI GGGAC 1 cut(s) 360
BsmI GAATGC 1 cut(s) 1022
BsnI GGCC 2 cut(s) 268, 1502
Bso31I GGTCTC 1 cut(s) 63
BsoBI CYCGRG 3 cut(s) 172, 1121, 1296
Bsp119I TTCGAA 1 cut(s) 629
Bsp1286I GDGCHC 2 cut(s) 44, 1128
Bsp143I GATC 4 cut(s) 275, 536, 1105, 1226
BspACI CCGC 5 cut(s) 108, 158, 432, 1249, 1430
BspANI GGCC 2 cut(s) 268, 1502
BspCNI CTCAG 3 cut(s) 139, 874, 1408
BspFNI CGCG 1 cut(s) 1390
BspLI GGNNCC 3 cut(s) 375, 376, 840
BspMAI CTGCAG 1 cut(s) 1500
BspT104I TTCGAA 1 cut(s) 629
BspT107I GGYRCC 1 cut(s) 838
BspTNI GGTCTC 1 cut(s) 63
BsrDI GCAATG 1 cut(s) 773
BsrFI RCCGGY 1 cut(s) 1511
BsrI ACTGG 4 cut(s) 532, 840, 990, 1128
BssAI RCCGGY 1 cut(s) 1511
BssECI CCNNGG 7 cut(s) 24, 842, 949, 1295, 1296, 1359, 1452
BssMI GATC 4 cut(s) 275, 536, 1105, 1226
BssT1I CCWWGG 2 cut(s) 24, 949
Bst2UI CCWGG 4 cut(s) 143, 843, 1360, 1454
Bst4CI ACNGT 3 cut(s) 206, 957, 1054
Bst6I CTCTTC 3 cut(s) 683, 1364, 1525
BstAPI GCANNNNNTGC 2 cut(s) 1448, 1472
BstBI TTCGAA 1 cut(s) 629
BstC8I GCNNGC 2 cut(s) 925, 1500
BstDEI CTNAG 8 cut(s) 126, 233, 240, 317, 540, 882, 1395, 1578
BstF5I GGATG 2 cut(s) 941, 1432
BstFNI CGCG 1 cut(s) 1390
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 2 cut(s) 155, 1392
BstKTI GATC 4 cut(s) 278, 539, 1108, 1229
BstMAI GTCTC 3 cut(s) 63, 124, 230
BstMBI GATC 4 cut(s) 275, 536, 1105, 1226
BstMCI CGRYCG 1 cut(s) 917
BstMWI GCNNNNNNNGC 6 cut(s) 20, 29, 1033, 1396, 1448, 1472
BstNI CCWGG 4 cut(s) 143, 843, 1360, 1454
BstNSI RCATGY 1 cut(s) 1040
BstSCI CCNGG 7 cut(s) 141, 841, 911, 1295, 1296, 1358, 1452
BstSFI CTRYAG 1 cut(s) 1496
BstUI CGCG 1 cut(s) 1390
BstV1I GCAGC 4 cut(s) 41, 142, 358, 1391
BstX2I RGATCY 4 cut(s) 275, 536, 1105, 1226
BstYI RGATCY 4 cut(s) 275, 536, 1105, 1226
BsuRI GGCC 2 cut(s) 268, 1502
BtsCI GGATG 2 cut(s) 941, 1432
BtsIMutI CAGTG 2 cut(s) 513, 997
Cac8I GCNNGC 2 cut(s) 925, 1500
CaiI CAGNNNCTG 1 cut(s) 483
CfoI GCGC 2 cut(s) 155, 1392
Cfr10I RCCGGY 1 cut(s) 1511
Cfr13I GGNCC 3 cut(s) 266, 374, 1324
Cfr9I CCCGGG 1 cut(s) 1296
Csp6I GTAC 3 cut(s) 212, 1087, 1118
CviAII CATG 4 cut(s) 1037, 1154, 1272, 1331
CviQI GTAC 3 cut(s) 212, 1087, 1118
DdeI CTNAG 8 cut(s) 126, 233, 240, 317, 540, 882, 1395, 1578
DpnI GATC 4 cut(s) 277, 538, 1107, 1228
DpnII GATC 4 cut(s) 275, 536, 1105, 1226
DraIII CACNNNGTG 1 cut(s) 1145
Eam1104I CTCTTC 3 cut(s) 683, 1364, 1525
EarI CTCTTC 3 cut(s) 683, 1364, 1525
Eco130I CCWWGG 2 cut(s) 24, 949
Eco24I GRGCYC 1 cut(s) 1128
Eco31I GGTCTC 1 cut(s) 63
Eco47I GGWCC 2 cut(s) 374, 1324
Eco47III AGCGCT 1 cut(s) 154
Eco57I CTGAAG 2 cut(s) 1193, 1218
Eco88I CYCGRG 3 cut(s) 172, 1121, 1296
EcoO109I RGGNCCY 1 cut(s) 374
EcoRI GAATTC 2 cut(s) 244, 767
EcoRII CCWGG 4 cut(s) 141, 841, 1358, 1452
EcoT14I CCWWGG 2 cut(s) 24, 949
EcoT38I GRGCYC 1 cut(s) 1128
ErhI CCWWGG 2 cut(s) 24, 949
FaeI CATG 4 cut(s) 1040, 1157, 1275, 1334
FalI AAGNNNNNCTT 2 cut(s) 1216, 1248
FaqI GGGAC 1 cut(s) 360
FatI CATG 4 cut(s) 1036, 1153, 1271, 1330
Fnu4HI GCNGC 5 cut(s) 30, 156, 347, 1250, 1380
FokI GGATG 2 cut(s) 928, 1439
FriOI GRGCYC 1 cut(s) 1128
Fsp4HI GCNGC 5 cut(s) 30, 156, 347, 1250, 1380
FspBI CTAG 4 cut(s) 63, 534, 1133, 1143
GlaI GCGC 2 cut(s) 154, 1391
GluI GCNGC 5 cut(s) 30, 156, 347, 1250, 1380
HaeII RGCGCY 1 cut(s) 156
HaeIII GGCC 2 cut(s) 268, 1502
HapII CCGG 4 cut(s) 913, 1297, 1327, 1512
HhaI GCGC 2 cut(s) 155, 1392
Hin1II CATG 4 cut(s) 1040, 1157, 1275, 1334
Hin6I GCGC 2 cut(s) 153, 1390
HinP1I GCGC 2 cut(s) 153, 1390
HinfI GANTC 9 cut(s) 161, 223, 254, 505, 611, 873, 1150, 1213, 1517
HpaII CCGG 4 cut(s) 913, 1297, 1327, 1512
HphI GGTGA 5 cut(s) 1131, 1430, 1444, 1501, 1577
Hpy166II GTNNAC 6 cut(s) 105, 753, 977, 1087, 1139, 1280
Hpy188III TCNNGA 6 cut(s) 89, 118, 260, 534, 817, 1410
Hpy8I GTNNAC 6 cut(s) 105, 753, 977, 1087, 1139, 1280
Hpy99I CGWCG 1 cut(s) 1535
HpyAV CCTTC 5 cut(s) 48, 359, 722, 817, 1179
HpyCH4III ACNGT 3 cut(s) 206, 957, 1054
HpyCH4IV ACGT 2 cut(s) 214, 322
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 29, 1033, 1396, 1448, 1472
HpyF3I CTNAG 8 cut(s) 126, 233, 240, 317, 540, 882, 1395, 1578
HpySE526I ACGT 2 cut(s) 214, 322
Hsp92II CATG 4 cut(s) 1040, 1157, 1275, 1334
HspAI GCGC 2 cut(s) 153, 1390
KflI GGGWCCC 1 cut(s) 374
Kzo9I GATC 4 cut(s) 275, 536, 1105, 1226
LmnI GCTCC 1 cut(s) 599
Lsp1109I GCAGC 4 cut(s) 41, 142, 358, 1391
LweI GCATC 4 cut(s) 1391, 1417, 1453, 1462
MaeI CTAG 4 cut(s) 63, 534, 1133, 1143
MaeII ACGT 2 cut(s) 214, 322
MaeIII GTNAC 1 cut(s) 1507
MalI GATC 4 cut(s) 277, 538, 1107, 1228
MboI GATC 4 cut(s) 275, 536, 1105, 1226
MflI RGATCY 4 cut(s) 275, 536, 1105, 1226
MhlI GDGCHC 2 cut(s) 44, 1128
MlyI GAGTC 5 cut(s) 170, 232, 882, 1159, 1511
MmeI TCCRAC 3 cut(s) 568, 1081, 1513
MseI TTAA 3 cut(s) 791, 932, 984
MslI CAYNNNNRTG 2 cut(s) 859, 1158
MspI CCGG 4 cut(s) 913, 1297, 1327, 1512
MspR9I CCNGG 7 cut(s) 143, 843, 913, 1297, 1298, 1360, 1454
Mva1269I GAATGC 1 cut(s) 1022
MvaI CCWGG 4 cut(s) 143, 843, 1360, 1454
MvnI CGCG 1 cut(s) 1390
MwoI GCNNNNNNNGC 6 cut(s) 20, 29, 1033, 1396, 1448, 1472
NciI CCSGG 3 cut(s) 913, 1297, 1298
NdeII GATC 4 cut(s) 275, 536, 1105, 1226
NlaIII CATG 4 cut(s) 1040, 1157, 1275, 1334
NlaIV GGNNCC 3 cut(s) 375, 376, 840
NmeAIII GCCGAG 1 cut(s) 294
NmuCI GTSAC 1 cut(s) 1507
NspI RCATGY 1 cut(s) 1040
NspV TTCGAA 1 cut(s) 629
OliI CACNNNNGTG 1 cut(s) 859
PaeR7I CTCGAG 1 cut(s) 1121
PctI GAATGC 1 cut(s) 1022
PfeI GAWTC 4 cut(s) 254, 505, 611, 1213
Pfl23II CGTACG 1 cut(s) 211
PkrI GCNGC 5 cut(s) 31, 157, 348, 1251, 1381
PleI GAGTC 5 cut(s) 169, 231, 881, 1158, 1511
PpsI GAGTC 5 cut(s) 169, 231, 881, 1158, 1511
PpuMI RGGWCCY 1 cut(s) 374
PsiI TTATAA 1 cut(s) 1547
Psp5II RGGWCCY 1 cut(s) 374
Psp6I CCWGG 4 cut(s) 141, 841, 1358, 1452
PspGI CCWGG 4 cut(s) 141, 841, 1358, 1452
PspLI CGTACG 1 cut(s) 211
PspN4I GGNNCC 3 cut(s) 375, 376, 840
PspPI GGNCC 3 cut(s) 266, 374, 1324
PspPPI RGGWCCY 1 cut(s) 374
PspXI VCTCGAGB 1 cut(s) 1121
PstI CTGCAG 1 cut(s) 1500
PstNI CAGNNNCTG 1 cut(s) 483
PsuI RGATCY 4 cut(s) 275, 536, 1105, 1226
RsaI GTAC 3 cut(s) 213, 1088, 1119
RsaNI GTAC 3 cut(s) 212, 1087, 1118
RseI CAYNNNNRTG 2 cut(s) 859, 1158
SaqAI TTAA 3 cut(s) 791, 932, 984
SatI GCNGC 5 cut(s) 30, 156, 347, 1250, 1380
Sau3AI GATC 4 cut(s) 275, 536, 1105, 1226
Sau96I GGNCC 3 cut(s) 266, 374, 1324
SchI GAGTC 5 cut(s) 170, 232, 882, 1159, 1511
ScrFI CCNGG 7 cut(s) 143, 843, 913, 1297, 1298, 1360, 1454
SduI GDGCHC 2 cut(s) 44, 1128
SfaNI GCATC 4 cut(s) 1391, 1417, 1453, 1462
SfcI CTRYAG 1 cut(s) 1496
Sfr274I CTCGAG 1 cut(s) 1121
SfuI TTCGAA 1 cut(s) 629
SgrAI CRCCGGYG 1 cut(s) 1511
SinI GGWCC 2 cut(s) 374, 1324
SlaI CTCGAG 1 cut(s) 1121
SmaI CCCGGG 1 cut(s) 1298
SmiMI CAYNNNNRTG 2 cut(s) 859, 1158
SmlI CTYRAG 3 cut(s) 87, 580, 1121
SmoI CTYRAG 3 cut(s) 87, 580, 1121
SsiI CCGC 5 cut(s) 108, 158, 432, 1249, 1430
SspMI CTAG 4 cut(s) 63, 534, 1133, 1143
StyD4I CCNGG 7 cut(s) 141, 841, 911, 1295, 1296, 1358, 1452
StyI CCWWGG 2 cut(s) 24, 949
TaaI ACNGT 3 cut(s) 206, 957, 1054
TaiI ACGT 2 cut(s) 217, 325
TaqI TCGA 7 cut(s) 248, 392, 463, 629, 917, 1122, 1530
TauI GCSGC 1 cut(s) 1252
TfiI GAWTC 4 cut(s) 254, 505, 611, 1213
Tru1I TTAA 3 cut(s) 791, 932, 984
Tru9I TTAA 3 cut(s) 791, 932, 984
TscAI CASTG 2 cut(s) 520, 997
TseFI GTSAC 1 cut(s) 1507
TseI GCWGC 4 cut(s) 29, 155, 346, 1379
Tsp45I GTSAC 1 cut(s) 1507
TspDTI ATGAA 4 cut(s) 207, 378, 603, 930
TspGWI ACGGA 1 cut(s) 7
TspMI CCCGGG 1 cut(s) 1296
TspRI CASTG 2 cut(s) 520, 997
VpaK11BI GGWCC 2 cut(s) 374, 1324
XapI RAATTY 5 cut(s) 244, 436, 767, 937, 1203
XbaI TCTAGA 1 cut(s) 533
XceI RCATGY 1 cut(s) 1040
XhoI CTCGAG 1 cut(s) 1121
XmaI CCCGGG 1 cut(s) 1296
XspI CTAG 4 cut(s) 63, 534, 1133, 1143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.