Rh2DG221400
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0010457
Physical Location & Seq
Forward (+)
21326384 .. 21329827
3444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG221400.1

Sequence Viewer

Length: 1806 bp
ATGAGGAATGCCCACCAGGTGTTTGTGAAAATGCCTGAGAGAGACTCAGTGGCCTCCACACCCCAACAATCCTCAATTCTGCGAAGATCTCCCAGATTTCTTCACCCCAAGACCACTCCAGAACCACAGAAACTCGCCACACCTCGCCGGAAGCCTCAGAGAAGGACCGCTGCAGAATCCGAAAACCCGAAAACCCCCAAATCCAAATTCAGAAGGAACGGGGCAAAAGCTTTGGATTGTAGACTTCTTGAGAAGAGTAACAGTCCAGAACCGGAGCAAACGGCCACGATTCTCCGAAAGTCGCAGCGGCTTGTGGAATTGAAAGAGAGATCTGGGCAGTTGGAAAACCCTAAAACCCCCAAATTTAAATCTAGAAGCGACAATGTGGTACGCTCTTTGAATCTTTCAATTGGCTCGAAGAAATTGAGTAAAGCCAATGCTGGGTCGAGAGAATCTAAGGTTTTGAATCAGGAGGTGGTGGTGGTGGATGAAGATGAGGATTCCTCCCCAGAGAGAGTCTCAAAGAAATTGGGGGAATCTCATTATGGGTCTCGTAATTGCGAGAAATCGAGTTCTGGGTCAAGAAAAGCTCCAAGATTGAACAATGTCAGTGATGGGTTTCAGACTCCTAGACGATCTTCGAGGTTGGGTGGTAAGCAGAATGTGGTTGACAAACAGACTGATAAGGCAACTAGTGGTAGATCTAAGAGTAAGTCCAAAATTTCTTTGGATAAAGAGAAGGTCTCAGGTGTTCGGAAAGATGGAGCTTGTGTGAATTCAGGCGAAATTGTTTTGGAAAAGAGCAAAAGGGTGAGTAAGAAAAGTTCAGTCGGTGGTGTTGAAACAGTTAGTGTGGAAGGTGGAGAGGGCAAAGCTCAAGAGTTAGATTGCGGAGATAAAAAAGTTGCGGTTAGGAGGAAGAGAAAGAGAGGTGGAGAAGATGTCAAGGTCGCCAAAGGTTGGACAAAGGAACAAGAATTGGCCTTGCAGAGAGCTTATTTGCTAGCAAAGCCGACGCCTGGTTTCTGGAAGCAGGTTTCTAAACTGGTTCCCGGAAAGTCTGCACAGGATTGCTTTGATAGGATACATTCTGACCATATAACCCCACCCCAACCTCGTCCTCGGTCGAGGGCAAAGATTACTACAAATTCATCCCCCCTTGGAGGATTTTCACTCTCTGCAAGTAGACTGCTTAATCCTGTTGAGTCAAAGGCTAAAAGACATGGCTGCAATAAACAGAGAAGCCATCTTGCGCAGAAAGCTGTCAGAGCATTATTACACAAGCATTATCAAGTGCACCAAGAGTTTGAGGCAGATCTATTTTCAGTACTTGAGCCAAGTGTAGGTCCATCTACTGAGACTTCTCAGCCTAGTGTTATACCTTCTACTCCAACAAATTCACAGGTAAAGCAGGGATTCCTTCACAAGAGCAGTCAAATATCATCTGCGGGTCATAAGAAGCCCCTCTCAAGGTTTAGTAACTCATCTGAGACATCTCTTGTTAGTCCTCCGGTATTAAAGCAGGTCAAGAACAAGGTCTTGCATGAGAAATATATTGACCAATTGCATATCAGGGAAGCTAAGAGAAAAACATTAGCTAAAAACACTAAAAAATCCACTGGTGGAATCGATGAAACACAAAAGAGTCATATTCAGGGAGTGGATCTGAGAACTGCAAAAATTGCCCTGGTTTCTGATGCAAGAGATGCTATCAATAAGCTCAAACATCTGCAGGAAAACTCTTCGGAGTCGGATGATGATGGAATTGCAAGGGATGATGAGGAAGATGAAGATGAGACTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

601

Amino Acids

66.48

Weight (kDa)

10.02

Isoelectric Point (pI)

57.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53440 AT3G53440
fragaria_vesca FvH4_1g18920
malus_domestica MD01G1045600.v1.1 MD15G1306300.v1.1
prunus_persica Prupe.6G210300_v2.0.a1
pyrus_communis pycom01g07170 pycom15g27060 pycom15g27070
rosa_chinensis RchiOBHm_Chr2g0109931
rosa_laevigata RLG00000017770 RLG00000036544
rosa_multiflora Rmu_sc0005173.1_g000019
rosa_roxburghii Rroxscaffold_2G00133870
rosa_rugosa Rorug02G0163900
rosa_samantha Rh2AG215900 Rh2BG225900 Rh2CG218100 Rh2DG221400 Rh5DG403700
rosa_wichuraiana Rw2G016670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1254
Acc36I ACCTGC 2 cut(s) 1024, 1513
AccB7I CCANNNNNTGG 1 cut(s) 960
AccI GTMKAC 2 cut(s) 241, 1186
AciI CCGC 5 cut(s) 168, 307, 891, 908, 1448
AclWI GGATC 1 cut(s) 1671
AcoI YGGCCR 1 cut(s) 282
AcsI RAATTY 6 cut(s) 206, 362, 720, 775, 1147, 1396
AcyI GRCGYC 1 cut(s) 1016
AdeI CACNNNGTG 1 cut(s) 19
AfaI GTAC 2 cut(s) 390, 1329
AfiI CCNNNNNNNGG 6 cut(s) 441, 960, 1019, 1163, 1343, 1470
AgsI TTSAA 6 cut(s) 322, 400, 408, 466, 601, 842
AhlI ACTAGT 1 cut(s) 692
AjnI CCWGG 3 cut(s) 15, 1018, 1686
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AluBI AGCT 9 cut(s) 230, 590, 767, 875, 995, 1262, 1580, 1598, 1720
AluI AGCT 9 cut(s) 230, 590, 767, 875, 995, 1262, 1580, 1598, 1720
Alw21I GWGCWC 1 cut(s) 1299
Alw26I GTCTC 7 cut(s) 36, 523, 555, 748, 1352, 1484, 1790
Alw44I GTGCAC 1 cut(s) 1295
AlwI GGATC 1 cut(s) 1671
AoxI GGCC 3 cut(s) 51, 282, 981
ApaLI GTGCAC 1 cut(s) 1295
ApeKI GCWGC 3 cut(s) 170, 304, 1227
ApoI RAATTY 6 cut(s) 206, 362, 720, 775, 1147, 1396
AspLEI GCGC 1 cut(s) 1255
AspS9I GGNCC 2 cut(s) 165, 1346
AsuC2I CCSGG 1 cut(s) 1053
AsuHPI GGTGA 2 cut(s) 95, 823
AsuNHI GCTAGC 1 cut(s) 1003
AvaII GGWCC 2 cut(s) 165, 1346
BaeGI GKGCMC 1 cut(s) 1299
Bbv12I GWGCWC 1 cut(s) 1299
BbvI GCAGC 3 cut(s) 157, 316, 1214
BccI CCATC 5 cut(s) 608, 755, 1254, 1357, 1754
BceAI ACGGC 1 cut(s) 297
BciT130I CCWGG 3 cut(s) 17, 1020, 1688
BciVI GTATCC 1 cut(s) 1077
BcnI CCSGG 1 cut(s) 1053
BcoDI GTCTC 7 cut(s) 36, 523, 555, 748, 1352, 1484, 1790
BcuI ACTAGT 1 cut(s) 692
BfaI CTAG 5 cut(s) 372, 630, 693, 1004, 1371
BfmI CTRYAG 2 cut(s) 171, 1730
BfuAI ACCTGC 2 cut(s) 1024, 1513
BfuI GTATCC 1 cut(s) 1077
BglII AGATCT 4 cut(s) 86, 329, 701, 1315
BisI GCNGC 4 cut(s) 171, 305, 308, 1228
BlsI GCNGC 4 cut(s) 172, 306, 309, 1229
BmcAI AGTACT 1 cut(s) 1329
Bme1390I CCNGG 4 cut(s) 17, 1020, 1053, 1688
Bme18I GGWCC 2 cut(s) 165, 1346
BmgT120I GGNCC 2 cut(s) 165, 1346
BmiI GGNNCC 1 cut(s) 1050
BmrFI CCNGG 4 cut(s) 17, 1020, 1053, 1688
BmsI GCATC 2 cut(s) 1687, 1696
BmtI GCTAGC 1 cut(s) 1007
BplI GAGNNNNNCTC 8 cut(s) 29, 61, 488, 520, 503, 535, 728, 760
BpmI CTGGAG 1 cut(s) 102
BpuEI CTTGAG 4 cut(s) 269, 861, 1352, 1453
BpuMI CCSGG 1 cut(s) 1053
Bsa29I ATCGAT 1 cut(s) 1629
BsaHI GRCGYC 1 cut(s) 1016
BsaI GGTCTC 2 cut(s) 555, 748
BsaJI CCNNGG 3 cut(s) 1121, 1159, 1686
BsaWI WCCGGW 2 cut(s) 271, 1510
BsaXI ACNNNNNCTCC 4 cut(s) 756, 786, 927, 957
Bsc4I CCNNNNNNNGG 6 cut(s) 441, 960, 1019, 1163, 1343, 1470
Bse1I ACTGG 2 cut(s) 1050, 1624
BseBI CCWGG 3 cut(s) 17, 1020, 1688
BseCI ATCGAT 1 cut(s) 1629
BseDI CCNNGG 3 cut(s) 1121, 1159, 1686
BseGI GGATG 4 cut(s) 493, 1151, 1759, 1780
BseLI CCNNNNNNNGG 6 cut(s) 441, 960, 1019, 1163, 1343, 1470
BseMII CTCAG 8 cut(s) 27, 60, 170, 759, 1347, 1379, 1479, 1658
BseNI ACTGG 2 cut(s) 1050, 1624
BseSI GKGCMC 1 cut(s) 1299
BseXI GCAGC 3 cut(s) 157, 316, 1214
BseYI CCCAGC 1 cut(s) 440
BsgI GTGCAG 1 cut(s) 1047
Bsh1285I CGRYCG 1 cut(s) 1127
BshFI GGCC 3 cut(s) 53, 284, 983
BshVI ATCGAT 1 cut(s) 1629
BsiEI CGRYCG 1 cut(s) 1127
BsiHKAI GWGCWC 1 cut(s) 1299
BsiSI CCGG 4 cut(s) 148, 272, 1053, 1511
BslI CCNNNNNNNGG 6 cut(s) 441, 960, 1019, 1163, 1343, 1470
BsmAI GTCTC 7 cut(s) 36, 523, 555, 748, 1352, 1484, 1790
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 3 cut(s) 53, 284, 983
Bso31I GGTCTC 2 cut(s) 555, 748
Bsp1286I GDGCHC 1 cut(s) 1299
Bsp143I GATC 6 cut(s) 86, 329, 635, 701, 1315, 1663
BspACI CCGC 5 cut(s) 168, 307, 891, 908, 1448
BspANI GGCC 3 cut(s) 53, 284, 983
BspCNI CTCAG 8 cut(s) 28, 59, 169, 758, 1348, 1378, 1480, 1659
BspDI ATCGAT 1 cut(s) 1629
BspLI GGNNCC 1 cut(s) 1050
BspMAI CTGCAG 2 cut(s) 175, 1734
BspMI ACCTGC 2 cut(s) 1024, 1513
BspOI GCTAGC 1 cut(s) 1007
BspPI GGATC 1 cut(s) 1671
BspTNI GGTCTC 2 cut(s) 555, 748
BsrI ACTGG 2 cut(s) 1050, 1624
BssECI CCNNGG 3 cut(s) 1121, 1159, 1686
BssMI GATC 6 cut(s) 86, 329, 635, 701, 1315, 1663
BssNI GRCGYC 1 cut(s) 1016
BssT1I CCWWGG 1 cut(s) 1159
Bst2UI CCWGG 3 cut(s) 17, 1020, 1688
Bst4CI ACNGT 2 cut(s) 263, 847
Bst6I CTCTTC 3 cut(s) 248, 914, 1747
BstACI GRCGYC 1 cut(s) 1016
BstAPI GCANNNNNTGC 2 cut(s) 1682, 1706
BstC8I GCNNGC 1 cut(s) 1005
BstF5I GGATG 4 cut(s) 493, 1151, 1759, 1780
BstHHI GCGC 1 cut(s) 1255
BstKTI GATC 6 cut(s) 89, 332, 638, 704, 1318, 1666
BstMAI GTCTC 7 cut(s) 36, 523, 555, 748, 1352, 1484, 1790
BstMBI GATC 6 cut(s) 86, 329, 635, 701, 1315, 1663
BstMCI CGRYCG 1 cut(s) 1127
BstMWI GCNNNNNNNGC 5 cut(s) 1009, 1259, 1268, 1682, 1706
BstNI CCWGG 3 cut(s) 17, 1020, 1688
BstSCI CCNGG 4 cut(s) 15, 1018, 1051, 1686
BstSFI CTRYAG 2 cut(s) 171, 1730
BstSLI GKGCMC 1 cut(s) 1299
BstV1I GCAGC 3 cut(s) 157, 316, 1214
BstX2I RGATCY 5 cut(s) 86, 329, 701, 1315, 1663
BstYI RGATCY 5 cut(s) 86, 329, 701, 1315, 1663
Bsu15I ATCGAT 1 cut(s) 1629
BsuI GTATCC 1 cut(s) 1077
BsuRI GGCC 3 cut(s) 53, 284, 983
BsuTUI ATCGAT 1 cut(s) 1629
BtsCI GGATG 4 cut(s) 493, 1151, 1759, 1780
BtsIMutI CAGTG 3 cut(s) 54, 616, 1617
BveI ACCTGC 2 cut(s) 1024, 1513
Cac8I GCNNGC 1 cut(s) 1005
CfoI GCGC 1 cut(s) 1255
Cfr13I GGNCC 2 cut(s) 165, 1346
ClaI ATCGAT 1 cut(s) 1629
CseI GACGC 1 cut(s) 1024
CsiI ACCWGGT 1 cut(s) 15
Csp6I GTAC 2 cut(s) 389, 1328
CviAII CATG 2 cut(s) 1223, 1544
CviQI GTAC 2 cut(s) 389, 1328
DpnI GATC 6 cut(s) 88, 331, 637, 703, 1317, 1665
DpnII GATC 6 cut(s) 86, 329, 635, 701, 1315, 1663
DraI TTTAAA 1 cut(s) 367
DraIII CACNNNGTG 1 cut(s) 19
EaeI YGGCCR 1 cut(s) 282
Eam1104I CTCTTC 3 cut(s) 248, 914, 1747
EarI CTCTTC 3 cut(s) 248, 914, 1747
Eco130I CCWWGG 1 cut(s) 1159
Eco31I GGTCTC 2 cut(s) 555, 748
Eco47I GGWCC 2 cut(s) 165, 1346
EcoRI GAATTC 1 cut(s) 775
EcoRII CCWGG 3 cut(s) 15, 1018, 1686
EcoT14I CCWWGG 1 cut(s) 1159
ErhI CCWWGG 1 cut(s) 1159
FaeI CATG 2 cut(s) 1226, 1547
FatI CATG 2 cut(s) 1222, 1543
FauI CCCGC 1 cut(s) 1441
FblI GTMKAC 2 cut(s) 241, 1186
Fnu4HI GCNGC 4 cut(s) 171, 305, 308, 1228
FokI GGATG 4 cut(s) 500, 1138, 1766, 1787
Fsp4HI GCNGC 4 cut(s) 171, 305, 308, 1228
FspBI CTAG 5 cut(s) 372, 630, 693, 1004, 1371
FspI TGCGCA 1 cut(s) 1254
GlaI GCGC 1 cut(s) 1254
GluI GCNGC 4 cut(s) 171, 305, 308, 1228
GsaI CCCAGC 1 cut(s) 444
GsuI CTGGAG 1 cut(s) 102
HaeIII GGCC 3 cut(s) 53, 284, 983
HapII CCGG 4 cut(s) 148, 272, 1053, 1511
HgaI GACGC 1 cut(s) 1024
HhaI GCGC 1 cut(s) 1255
Hin1I GRCGYC 1 cut(s) 1016
Hin1II CATG 2 cut(s) 1226, 1547
Hin6I GCGC 1 cut(s) 1253
HinP1I GCGC 1 cut(s) 1253
HincII GTYRAC 1 cut(s) 670
HindII GTYRAC 1 cut(s) 670
HindIII AAGCTT 1 cut(s) 228
HpaII CCGG 4 cut(s) 148, 272, 1053, 1511
HphI GGTGA 2 cut(s) 95, 823
Hpy166II GTNNAC 4 cut(s) 242, 670, 1187, 1297
Hpy8I GTNNAC 4 cut(s) 242, 670, 1187, 1297
Hpy99I CGWCG 1 cut(s) 1018
HpyAV CCTTC 6 cut(s) 156, 207, 733, 851, 1392, 1430
HpyCH4III ACNGT 2 cut(s) 263, 847
HpyF10VI GCNNNNNNNGC 5 cut(s) 1009, 1259, 1268, 1682, 1706
Hsp92I GRCGYC 1 cut(s) 1016
Hsp92II CATG 2 cut(s) 1226, 1547
HspAI GCGC 1 cut(s) 1253
Kzo9I GATC 6 cut(s) 86, 329, 635, 701, 1315, 1663
LmnI GCTCC 3 cut(s) 274, 595, 764
Lsp1109I GCAGC 3 cut(s) 157, 316, 1214
LweI GCATC 2 cut(s) 1687, 1696
MabI ACCWGGT 1 cut(s) 15
MaeI CTAG 5 cut(s) 372, 630, 693, 1004, 1371
MaeIII GTNAC 2 cut(s) 257, 1478
MalI GATC 6 cut(s) 88, 331, 637, 703, 1317, 1665
MboI GATC 6 cut(s) 86, 329, 635, 701, 1315, 1663
MfeI CAATTG 2 cut(s) 408, 1562
MflI RGATCY 5 cut(s) 86, 329, 701, 1315, 1663
MhlI GDGCHC 1 cut(s) 1299
MlyI GAGTC 6 cut(s) 38, 525, 619, 1214, 1654, 1757
MmeI TCCRAC 4 cut(s) 321, 941, 1415, 1731
MseI TTAA 3 cut(s) 366, 1194, 1517
MspA1I CMGCKG 2 cut(s) 170, 307
MspI CCGG 4 cut(s) 148, 272, 1053, 1511
MspR9I CCNGG 4 cut(s) 17, 1020, 1053, 1688
MunI CAATTG 2 cut(s) 408, 1562
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 3 cut(s) 17, 1020, 1688
MwoI GCNNNNNNNGC 5 cut(s) 1009, 1259, 1268, 1682, 1706
NciI CCSGG 1 cut(s) 1053
NdeII GATC 6 cut(s) 86, 329, 635, 701, 1315, 1663
NheI GCTAGC 1 cut(s) 1003
NlaIII CATG 2 cut(s) 1226, 1547
NlaIV GGNNCC 1 cut(s) 1050
NsbI TGCGCA 1 cut(s) 1254
PctI GAATGC 1 cut(s) 13
PfeI GAWTC 9 cut(s) 176, 289, 400, 452, 466, 500, 536, 1416, 1626
PflMI CCANNNNNTGG 1 cut(s) 960
PfoI TCCNGGA 1 cut(s) 1051
PkrI GCNGC 4 cut(s) 172, 306, 309, 1229
PleI GAGTC 6 cut(s) 38, 524, 619, 1213, 1653, 1756
PpsI GAGTC 6 cut(s) 38, 524, 619, 1213, 1653, 1756
Psp6I CCWGG 3 cut(s) 15, 1018, 1686
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 3 cut(s) 15, 1018, 1686
PspN4I GGNNCC 1 cut(s) 1050
PspPI GGNCC 2 cut(s) 165, 1346
PsrI GAACNNNNNNTAC 2 cut(s) 808, 840
PstI CTGCAG 2 cut(s) 175, 1734
PsuI RGATCY 5 cut(s) 86, 329, 701, 1315, 1663
RsaI GTAC 2 cut(s) 390, 1329
RsaNI GTAC 2 cut(s) 389, 1328
SaqAI TTAA 3 cut(s) 366, 1194, 1517
SatI GCNGC 4 cut(s) 171, 305, 308, 1228
Sau3AI GATC 6 cut(s) 86, 329, 635, 701, 1315, 1663
Sau96I GGNCC 2 cut(s) 165, 1346
ScaI AGTACT 1 cut(s) 1329
SchI GAGTC 6 cut(s) 38, 525, 619, 1214, 1654, 1757
ScrFI CCNGG 4 cut(s) 17, 1020, 1053, 1688
SduI GDGCHC 1 cut(s) 1299
SexAI ACCWGGT 1 cut(s) 15
SfaNI GCATC 2 cut(s) 1687, 1696
SfcI CTRYAG 2 cut(s) 171, 1730
SinI GGWCC 2 cut(s) 165, 1346
SmiI ATTTAAAT 1 cut(s) 367
SmlI CTYRAG 4 cut(s) 248, 876, 1331, 1468
SmoI CTYRAG 4 cut(s) 248, 876, 1331, 1468
SpeI ACTAGT 1 cut(s) 692
SsiI CCGC 5 cut(s) 168, 307, 891, 908, 1448
SspMI CTAG 5 cut(s) 372, 630, 693, 1004, 1371
StyD4I CCNGG 4 cut(s) 15, 1018, 1051, 1686
StyI CCWWGG 1 cut(s) 1159
SwaI ATTTAAAT 1 cut(s) 367
TaaI ACNGT 2 cut(s) 263, 847
TaqI TCGA 6 cut(s) 416, 446, 569, 641, 1127, 1629
TaqII GACCGA 1 cut(s) 1113
TatI WGTACW 1 cut(s) 1327
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 9 cut(s) 176, 289, 400, 452, 466, 500, 536, 1416, 1626
Tru1I TTAA 3 cut(s) 366, 1194, 1517
Tru9I TTAA 3 cut(s) 366, 1194, 1517
TscAI CASTG 3 cut(s) 54, 616, 1624
TseI GCWGC 3 cut(s) 170, 304, 1227
TspDTI ATGAA 4 cut(s) 504, 1140, 1647, 1803
TspRI CASTG 3 cut(s) 54, 616, 1624
Van91I CCANNNNNTGG 1 cut(s) 960
VneI GTGCAC 1 cut(s) 1295
VpaK11BI GGWCC 2 cut(s) 165, 1346
XapI RAATTY 6 cut(s) 206, 362, 720, 775, 1147, 1396
XbaI TCTAGA 1 cut(s) 371
XcmI CCANNNNNNNNNTGG 1 cut(s) 724
XmiI GTMKAC 2 cut(s) 241, 1186
XspI CTAG 5 cut(s) 372, 630, 693, 1004, 1371
ZrmI AGTACT 1 cut(s) 1329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.