Prupe.6G210300_v2.0.a1
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0010457
Physical Location & Seq
Reverse (-)
21863948 .. 21867261
3314 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G210300.1

Sequence Viewer

Length: 1620 bp
ATGCCCGAGAGAGACTCCATACTCAACACACCACAACAAAACATAACTCTCCGAAGGTCTCCAAGATTTCTTCAACCCAAGAACACTCTAGAACCAGAGAAACCCCCCAAGACTCTCTGGAAGTCTCAGAAGCTTGTCCACCGTGAAAAGAGTGCTTCAAAATCCCAAAACCCGAGAACCCCCAAGTCTGAAGGAAAAAGCAGATCTGTTGTTCGCTCTTCGAGTCCTTCACTCAACTCTAAGAAATCGAGTAAAGCTCATGGGACCAGAAAATCTCCTAGATTGAACACTGGGGTTGAGCAGTTTCAGAGTCTCAGACGTTCTTCAAGGATTTTGAATCGGCAGCGCGTCGTCGTTGATGCTGGTAAGGATTTCCCACAGAAAGTCTCGAATAAATTGGTCAAATTTGATAATGGGTCGAGTAATTGCACGGATTTGAGTTCCGGGTCAAGAAAATGTGGAAGAAAATCTCTGAGATTTTGTATTGAGCAACCTGTTGTTGATGTACGCACGAATAAGGCAACCAATACTAGATCTAAAAGTAAAACAACTAGTTTCTTGGATAAAGAGGAATTCTCAGGTGTTGGAAAAGATGGAGCCTCTATTAATTCACCCGAAGGAGTTCCGAAAAAGAGCAAAAAGGTGACTTGGAGGAGTTCAGGTGGTGGTGAAGTGGTTAGTTCAGAAGGTAGAGAAAGGAAAATGCAAGAGTTAGATGGTGGAAATAAAGAAGTTAAGGTTAGGAGGAAGAGAAAGAGAGATGAAGAAGGTATTGGGGTTGTTCATGGATGGACAAAGGAACAAGAATTAGCCTTGCAGAGAGCTTATTTGGTAGCAAAGCCGACACCCCATTTCTGGAAGAAGGTTTCTAAAATGGTGCCTGGAAAATCTGCACAAGAGTGCTTTGATAGAGTCCATTCTGAGCATATAACCCCACCTCCACCTCCACCTCGTACCCGATCAAGGGCAGAGATCTTAGAAAATTCATCCCCCCTTGGACAATTTTCACTCTCTGCAAGTAAACTACTTAAACCCACTGAGCCAAAGTCTAAAAGGTCAAACTGCAATAAACAGAGGAGTCATATTGCCCAGAAAACTGTCAGAAAGTTATTACAAAAGCATCATCAAGTGTACCAGGATTATGAGGCAGATCTATTTTCAGTACTTGAGCCCAGTCTAGGTTCATCTACTGAGAGTCAGCCTAGTGTAATACTTTCTACCCCAAAGAATTTAAAGGGAAAACAGGGACTTCTTCAAAAGTGCAGTCAAAGATCTTCAGATCATAATAAGAAGCCCCCGTCGAGATTTAGTAGCTCATGTGGGGAACCTCTTGTTAGCCCCCCTGTATTGAAGCAGGTCAGAAATAGGGTCTGGCATGAGAAGTATATTGACCAATTACATAACAGGGAAGCTAAGAGAAAAGCAGCCTCTACATGCACTCAAAAATCCACTGTCCAGGAAGTGGATACGGTCAGAACTGCAAAACTTGCCCTGGTTTCTGAAGCAAGAGATGCTATCAATAAGCTCCAACATCTGCAGGCCAATGCCATGGAAAACTCTTCTGATTTGGATGAGGATGGGATTGTAAATGATGATGAGGAAGGCGAAGACGATACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

540

Amino Acids

60.39

Weight (kDa)

10.03

Isoelectric Point (pI)

66.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53440 AT3G53440
fragaria_vesca FvH4_1g18920
malus_domestica MD01G1045600.v1.1 MD15G1306300.v1.1
prunus_persica Prupe.6G210300_v2.0.a1
pyrus_communis pycom01g07170 pycom15g27060 pycom15g27070
rosa_chinensis RchiOBHm_Chr2g0109931
rosa_laevigata RLG00000017770 RLG00000036544
rosa_multiflora Rmu_sc0005173.1_g000019
rosa_roxburghii Rroxscaffold_2G00133870
rosa_rugosa Rorug02G0163900
rosa_samantha Rh2AG215900 Rh2BG225900 Rh2CG218100 Rh2DG221400 Rh5DG403700
rosa_wichuraiana Rw2G016670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1345
AccB1I GGYRCC 1 cut(s) 877
AccB7I CCANNNNNTGG 1 cut(s) 1462
AccII CGCG 1 cut(s) 348
AcsI RAATTY 4 cut(s) 404, 572, 982, 1228
AcuI CTGAAG 3 cut(s) 210, 1260, 1521
AfaI GTAC 4 cut(s) 507, 955, 1133, 1164
AfiI CCNNNNNNNGG 5 cut(s) 855, 963, 964, 1178, 1462
AgsI TTSAA 7 cut(s) 74, 159, 286, 327, 337, 1256, 1351
AhlI ACTAGT 1 cut(s) 551
AjnI CCWGG 4 cut(s) 880, 1134, 1455, 1491
AjuI GAANNNNNNNTTGG 2 cut(s) 756, 788
AleI CACNNNNGTG 1 cut(s) 898
AluBI AGCT 6 cut(s) 133, 257, 824, 1314, 1412, 1525
AluI AGCT 6 cut(s) 133, 257, 824, 1314, 1412, 1525
Alw26I GTCTC 5 cut(s) 6, 63, 129, 317, 391
Ama87I CYCGRG 2 cut(s) 5, 172
AoxI GGCC 1 cut(s) 1539
ApeKI GCWGC 2 cut(s) 343, 1424
ApoI RAATTY 4 cut(s) 404, 572, 982, 1228
ArsI GACNNNNNNTTYG 2 cut(s) 1249, 1281
AseI ATTAAT 1 cut(s) 606
Asp700I GAANNNNTTC 1 cut(s) 621
AspLEI GCGC 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 264
AsuC2I CCSGG 1 cut(s) 445
AsuHPI GGTGA 3 cut(s) 603, 655, 680
AvaI CYCGRG 2 cut(s) 5, 172
AvaII GGWCC 1 cut(s) 264
BanI GGYRCC 1 cut(s) 877
BanII GRGCYC 1 cut(s) 1173
BbsI GAAGAC 1 cut(s) 1614
BbvI GCAGC 2 cut(s) 355, 1436
BccI CCATC 4 cut(s) 587, 710, 783, 1571
BciT130I CCWGG 4 cut(s) 882, 1136, 1457, 1493
BciVI GTATCC 1 cut(s) 1459
BcnI CCSGG 1 cut(s) 445
BcoDI GTCTC 5 cut(s) 6, 63, 129, 317, 391
BcuI ACTAGT 1 cut(s) 551
BfaI CTAG 6 cut(s) 89, 279, 531, 552, 1178, 1203
BfmI CTRYAG 1 cut(s) 1535
BfuAI ACCTGC 1 cut(s) 1345
BfuI GTATCC 1 cut(s) 1459
BglII AGATCT 5 cut(s) 203, 533, 972, 1150, 1271
BisI GCNGC 2 cut(s) 344, 1425
BlsI GCNGC 2 cut(s) 345, 1426
BmcAI AGTACT 1 cut(s) 1164
Bme1390I CCNGG 5 cut(s) 445, 882, 1136, 1457, 1493
Bme18I GGWCC 1 cut(s) 264
BmeT110I CYCGRG 2 cut(s) 5, 172
BmgT120I GGNCC 1 cut(s) 264
BmiI GGNNCC 4 cut(s) 265, 598, 879, 1326
BmrFI CCNGG 5 cut(s) 445, 882, 1136, 1457, 1493
BmrI ACTGGG 2 cut(s) 300, 1167
BmsI GCATC 3 cut(s) 349, 1129, 1501
BmuI ACTGGG 2 cut(s) 300, 1167
BpiI GAAGAC 1 cut(s) 1614
BplI GAGNNNNNCTC 5 cut(s) 31, 241, 273, 560, 592
BpuEI CTTGAG 1 cut(s) 1187
BpuMI CCSGG 1 cut(s) 445
BsaI GGTCTC 1 cut(s) 63
BsaJI CCNNGG 3 cut(s) 994, 1491, 1548
BsaXI ACNNNNNCTCC 4 cut(s) 646, 676, 922, 952
Bsc4I CCNNNNNNNGG 5 cut(s) 855, 963, 964, 1178, 1462
Bse1I ACTGG 2 cut(s) 295, 1173
BseBI CCWGG 4 cut(s) 882, 1136, 1457, 1493
BseDI CCNNGG 3 cut(s) 994, 1491, 1548
BseGI GGATG 4 cut(s) 794, 986, 1576, 1582
BseLI CCNNNNNNNGG 5 cut(s) 855, 963, 964, 1178, 1462
BseMII CTCAG 7 cut(s) 140, 328, 464, 591, 912, 1029, 1182
BseNI ACTGG 2 cut(s) 295, 1173
BseRI GAGGAG 2 cut(s) 667, 1090
BseXI GCAGC 2 cut(s) 355, 1436
BsgI GTGCAG 2 cut(s) 876, 1282
Bsh1236I CGCG 1 cut(s) 348
BshFI GGCC 1 cut(s) 1541
BshNI GGYRCC 1 cut(s) 877
BsiHKCI CYCGRG 2 cut(s) 5, 172
BsiSI CCGG 1 cut(s) 444
BslFI GGGAC 2 cut(s) 277, 1260
BslI CCNNNNNNNGG 5 cut(s) 855, 963, 964, 1178, 1462
BsmAI GTCTC 5 cut(s) 6, 63, 129, 317, 391
BsmFI GGGAC 2 cut(s) 277, 1260
BsnI GGCC 1 cut(s) 1541
Bso31I GGTCTC 1 cut(s) 63
BsoBI CYCGRG 2 cut(s) 5, 172
Bsp1286I GDGCHC 1 cut(s) 1173
Bsp143I GATC 7 cut(s) 203, 533, 959, 972, 1150, 1271, 1279
Bsp19I CCATGG 1 cut(s) 1548
BspANI GGCC 1 cut(s) 1541
BspCNI CTCAG 7 cut(s) 139, 327, 465, 590, 913, 1030, 1183
BspFNI CGCG 1 cut(s) 348
BspLI GGNNCC 4 cut(s) 265, 598, 879, 1326
BspMAI CTGCAG 1 cut(s) 1539
BspMI ACCTGC 1 cut(s) 1345
BspQI GCTCTTC 1 cut(s) 223
BspT107I GGYRCC 1 cut(s) 877
BspTNI GGTCTC 1 cut(s) 63
BsrI ACTGG 2 cut(s) 295, 1173
BssECI CCNNGG 3 cut(s) 994, 1491, 1548
BssMI GATC 7 cut(s) 203, 533, 959, 972, 1150, 1271, 1279
BssT1I CCWWGG 2 cut(s) 994, 1548
Bst2UI CCWGG 4 cut(s) 882, 1136, 1457, 1493
Bst4CI ACNGT 4 cut(s) 143, 1099, 1453, 1471
Bst6I CTCTTC 3 cut(s) 223, 743, 1564
BstAPI GCANNNNNTGC 2 cut(s) 1487, 1511
BstC8I GCNNGC 1 cut(s) 1539
BstDSI CCRYGG 1 cut(s) 1548
BstF5I GGATG 4 cut(s) 794, 986, 1576, 1582
BstFNI CGCG 1 cut(s) 348
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 7 cut(s) 206, 536, 962, 975, 1153, 1274, 1282
BstMAI GTCTC 5 cut(s) 6, 63, 129, 317, 391
BstMBI GATC 7 cut(s) 203, 533, 959, 972, 1150, 1271, 1279
BstMWI GCNNNNNNNGC 2 cut(s) 1487, 1511
BstNI CCWGG 4 cut(s) 882, 1136, 1457, 1493
BstNSI RCATGY 1 cut(s) 1437
BstSCI CCNGG 5 cut(s) 443, 880, 1134, 1455, 1491
BstSFI CTRYAG 1 cut(s) 1535
BstUI CGCG 1 cut(s) 348
BstV1I GCAGC 2 cut(s) 355, 1436
BstV2I GAAGAC 1 cut(s) 1614
BstX2I RGATCY 5 cut(s) 203, 533, 972, 1150, 1271
BstXI CCANNNNNNTGG 1 cut(s) 1549
BstYI RGATCY 5 cut(s) 203, 533, 972, 1150, 1271
BsuI GTATCC 1 cut(s) 1459
BsuRI GGCC 1 cut(s) 1541
BtgI CCRYGG 1 cut(s) 1548
BtsCI GGATG 4 cut(s) 794, 986, 1576, 1582
BtsIMutI CAGTG 3 cut(s) 288, 1035, 1449
BveI ACCTGC 1 cut(s) 1345
Cac8I GCNNGC 1 cut(s) 1539
CfoI GCGC 1 cut(s) 348
Cfr13I GGNCC 1 cut(s) 264
CseI GACGC 1 cut(s) 337
Csp6I GTAC 4 cut(s) 506, 954, 1132, 1163
CviAII CATG 6 cut(s) 260, 785, 1317, 1376, 1434, 1549
CviQI GTAC 4 cut(s) 506, 954, 1132, 1163
DpnI GATC 7 cut(s) 205, 535, 961, 974, 1152, 1273, 1281
DpnII GATC 7 cut(s) 203, 533, 959, 972, 1150, 1271, 1279
DraI TTTAAA 1 cut(s) 1233
Eam1104I CTCTTC 3 cut(s) 223, 743, 1564
EarI CTCTTC 3 cut(s) 223, 743, 1564
Eco130I CCWWGG 2 cut(s) 994, 1548
Eco24I GRGCYC 1 cut(s) 1173
Eco31I GGTCTC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 264
Eco57I CTGAAG 3 cut(s) 210, 1260, 1521
Eco88I CYCGRG 2 cut(s) 5, 172
EcoRI GAATTC 1 cut(s) 572
EcoRII CCWGG 4 cut(s) 880, 1134, 1455, 1491
EcoT14I CCWWGG 2 cut(s) 994, 1548
EcoT38I GRGCYC 1 cut(s) 1173
ErhI CCWWGG 2 cut(s) 994, 1548
FaeI CATG 6 cut(s) 263, 788, 1320, 1379, 1437, 1552
FaqI GGGAC 2 cut(s) 277, 1260
FatI CATG 6 cut(s) 259, 784, 1316, 1375, 1433, 1548
Fnu4HI GCNGC 2 cut(s) 344, 1425
FokI GGATG 4 cut(s) 801, 973, 1583, 1589
FriOI GRGCYC 1 cut(s) 1173
Fsp4HI GCNGC 2 cut(s) 344, 1425
FspBI CTAG 6 cut(s) 89, 279, 531, 552, 1178, 1203
GlaI GCGC 1 cut(s) 347
GluI GCNGC 2 cut(s) 344, 1425
HaeIII GGCC 1 cut(s) 1541
HapII CCGG 1 cut(s) 444
HgaI GACGC 1 cut(s) 337
HhaI GCGC 1 cut(s) 348
Hin1II CATG 6 cut(s) 263, 788, 1320, 1379, 1437, 1552
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 8 cut(s) 14, 112, 223, 310, 337, 912, 1078, 1195
HpaII CCGG 1 cut(s) 444
HphI GGTGA 3 cut(s) 603, 655, 680
Hpy166II GTNNAC 3 cut(s) 139, 1022, 1132
Hpy188III TCNNGA 6 cut(s) 89, 118, 388, 450, 856, 1302
Hpy8I GTNNAC 3 cut(s) 139, 1022, 1132
Hpy99I CGWCG 3 cut(s) 353, 356, 1303
HpyAV CCTTC 8 cut(s) 48, 185, 237, 611, 680, 761, 856, 1595
HpyCH4III ACNGT 4 cut(s) 143, 1099, 1453, 1471
HpyCH4IV ACGT 1 cut(s) 319
HpyF10VI GCNNNNNNNGC 2 cut(s) 1487, 1511
HpySE526I ACGT 1 cut(s) 319
Hsp92II CATG 6 cut(s) 263, 788, 1320, 1379, 1437, 1552
HspAI GCGC 1 cut(s) 346
Kzo9I GATC 7 cut(s) 203, 533, 959, 972, 1150, 1271, 1279
LguI GCTCTTC 1 cut(s) 223
LmnI GCTCC 2 cut(s) 596, 1530
Lsp1109I GCAGC 2 cut(s) 355, 1436
LweI GCATC 3 cut(s) 349, 1129, 1501
MaeI CTAG 6 cut(s) 89, 279, 531, 552, 1178, 1203
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 1 cut(s) 643
MalI GATC 7 cut(s) 205, 535, 961, 974, 1152, 1273, 1281
MboI GATC 7 cut(s) 203, 533, 959, 972, 1150, 1271, 1279
MflI RGATCY 5 cut(s) 203, 533, 972, 1150, 1271
MhlI GDGCHC 1 cut(s) 1173
MlyI GAGTC 7 cut(s) 8, 106, 232, 319, 921, 1087, 1204
MmeI TCCRAC 2 cut(s) 565, 1552
MroXI GAANNNNTTC 1 cut(s) 621
MseI TTAA 4 cut(s) 606, 735, 1029, 1232
MslI CAYNNNNRTG 1 cut(s) 898
MspI CCGG 1 cut(s) 444
MspR9I CCNGG 5 cut(s) 445, 882, 1136, 1457, 1493
MvaI CCWGG 4 cut(s) 882, 1136, 1457, 1493
MvnI CGCG 1 cut(s) 348
MwoI GCNNNNNNNGC 2 cut(s) 1487, 1511
NciI CCSGG 1 cut(s) 445
NcoI CCATGG 1 cut(s) 1548
NdeII GATC 7 cut(s) 203, 533, 959, 972, 1150, 1271, 1279
NlaIII CATG 6 cut(s) 263, 788, 1320, 1379, 1437, 1552
NlaIV GGNNCC 4 cut(s) 265, 598, 879, 1326
NmuCI GTSAC 1 cut(s) 643
NspI RCATGY 1 cut(s) 1437
OliI CACNNNNGTG 1 cut(s) 898
PciSI GCTCTTC 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 621
PfeI GAWTC 1 cut(s) 337
PflMI CCANNNNNTGG 1 cut(s) 1462
PfoI TCCNGGA 1 cut(s) 1455
PkrI GCNGC 2 cut(s) 345, 1426
PleI GAGTC 7 cut(s) 8, 106, 231, 318, 920, 1086, 1203
PpsI GAGTC 7 cut(s) 8, 106, 231, 318, 920, 1086, 1203
PshBI ATTAAT 1 cut(s) 606
Psp6I CCWGG 4 cut(s) 880, 1134, 1455, 1491
PspGI CCWGG 4 cut(s) 880, 1134, 1455, 1491
PspN4I GGNNCC 4 cut(s) 265, 598, 879, 1326
PspPI GGNCC 1 cut(s) 264
PstI CTGCAG 1 cut(s) 1539
PsuI RGATCY 5 cut(s) 203, 533, 972, 1150, 1271
RsaI GTAC 4 cut(s) 507, 955, 1133, 1164
RsaNI GTAC 4 cut(s) 506, 954, 1132, 1163
RseI CAYNNNNRTG 1 cut(s) 898
SapI GCTCTTC 1 cut(s) 223
SaqAI TTAA 4 cut(s) 606, 735, 1029, 1232
SatI GCNGC 2 cut(s) 344, 1425
Sau3AI GATC 7 cut(s) 203, 533, 959, 972, 1150, 1271, 1279
Sau96I GGNCC 1 cut(s) 264
ScaI AGTACT 1 cut(s) 1164
SchI GAGTC 7 cut(s) 8, 106, 232, 319, 921, 1087, 1204
ScrFI CCNGG 5 cut(s) 445, 882, 1136, 1457, 1493
SduI GDGCHC 1 cut(s) 1173
SfaNI GCATC 3 cut(s) 349, 1129, 1501
SfcI CTRYAG 1 cut(s) 1535
SinI GGWCC 1 cut(s) 264
SmiMI CAYNNNNRTG 1 cut(s) 898
SmlI CTYRAG 1 cut(s) 1166
SmoI CTYRAG 1 cut(s) 1166
SpeI ACTAGT 1 cut(s) 551
SspMI CTAG 6 cut(s) 89, 279, 531, 552, 1178, 1203
StyD4I CCNGG 5 cut(s) 443, 880, 1134, 1455, 1491
StyI CCWWGG 2 cut(s) 994, 1548
TaaI ACNGT 4 cut(s) 143, 1099, 1453, 1471
TaiI ACGT 1 cut(s) 322
TaqI TCGA 5 cut(s) 221, 248, 389, 419, 1301
TatI WGTACW 1 cut(s) 1162
TfiI GAWTC 1 cut(s) 337
Tru1I TTAA 4 cut(s) 606, 735, 1029, 1232
Tru9I TTAA 4 cut(s) 606, 735, 1029, 1232
TscAI CASTG 3 cut(s) 295, 1042, 1456
TseFI GTSAC 1 cut(s) 643
TseI GCWGC 2 cut(s) 343, 1424
Tsp45I GTSAC 1 cut(s) 643
TspDTI ATGAA 4 cut(s) 773, 777, 975, 1173
TspGWI ACGGA 1 cut(s) 446
TspRI CASTG 3 cut(s) 295, 1042, 1456
Van91I CCANNNNNTGG 1 cut(s) 1462
VpaK11BI GGWCC 1 cut(s) 264
VspI ATTAAT 1 cut(s) 606
XapI RAATTY 4 cut(s) 404, 572, 982, 1228
XbaI TCTAGA 1 cut(s) 88
XceI RCATGY 1 cut(s) 1437
XmnI GAANNNNTTC 1 cut(s) 621
XspI CTAG 6 cut(s) 89, 279, 531, 552, 1178, 1203
ZrmI AGTACT 1 cut(s) 1164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.