RLG00000017770
MYB Family

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
21017946 .. 21021578
3633 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017770

Sequence Viewer

Length: 1776 bp
ATGCCTGAGAGAGACTCAGTGGCCTCCACACCCCAACAATCCTCAATTCTCCGAAGATCTCCCAGATTTCTTCACCCCAAGACCACTCCAGAACCACAGAAACTCACCACACCTCGCCGGAAGCCTCAGAGAAAGACCGCTGCAGAATCCGAAAACCCGAAAACCCCCAAATTTAAACTCGGAAGGAATGGGGAAAAAGCTTTGGATTGTAGACTTCTTGAGAAGGGTAACAGTCCAGAACCGGAGCAGCCGGCCACGATTCTCCGAAAGTCGCAGCGGCTGGTTGAATTGAAAGAGAGATCTGGGCAGTTGGAAAACCCTAAAACCCCCAAATTTAAATCTAGAAGCGACAATGTGGTACGCTCTTTGAATCTTTCAATTGGCTCGAAGAAATTGAGTAAAGCCAATGCTGGGTCGCGAGAATCTAAGGTTTTGAATCAGGAGGTGGTGGTGGTGGATGAAGATGAGGATTCCTCCCCAGAGAGAGTCTCAAAGAAATTGGGGGAATCTCATTATGGGTCTCGTAATTGCGAGAAATCGAGTTCTGGGTCAAGAAAAGCTACAAGATTGAACATTGTCAGTGATGGGTTTCAGACTCCTCGACGATCTTCGAGGTTGGGTGGTAAGCAGAATGTGGTTGACAAACAAACTGATACGGCAACTAGTGGTAGATCTAAGAGTAAGTCCAAAATTTCTTTGGATAAAGAGAAGGTCTCAGGTGTTCGGAAAGATGGAGCTTGTGTGAATTCAGGTGAAATTGTTTTGGAAAGGAGCAAAAGGGTGAGTAAGAAAAGTTCAGTTGTTGGTGTTGAAACAGTTAGTGTGGAAGGTGGAGAGGGCAAAGCTCAAGGGTTAGATTGCGGAGATAAAAAAGTTGCGGTTCGGAGGAAGAGAAAGAGAGGTGGAGAAGATGTCAAGGTTGCTAAGGGGTGGACAAAGGAACAAGAATTGGCCTTGCAGAGAGCTTATTTGCTAGCAAAGCCAACGCCTGGTTTCTGGAAGCAGGTTTCTAAACTGGTTCCCGGAAAGTCTGCACAGGATTGCTTTGATAGGATACATTCTGACCATATAACCCCACCCCAACCTCGTCCTCGGTCGAGGGCAAAGATAACCACAAATTCATCCCCCCTTGGAGGATTTTCACTCTCTGCAAGTAAACTGCTTAATCCCGTTGAGTCAAAGGCTAAAAGACATGGCTGCAATAAACAGAGAAGTCATCTTGCGCAGAAAACTGTCAGAGCGTTATTACACAAGCATTATCAAGTGCACCAAGAGTTTGAGGCAGATCTATTTTCAGTACTTGAGCCCAGTGTAGGTCCATCTACTGAGACTTCTCAGCCTAGTGTTATACCTTCTACTCCAACAAATTCCCAGGTAAAGCAGGGATTCCTTCACAAGAGCAGTCAAATATCATCTGTGGGTCATAAGAAGCCCCTCTCAAGGTTTAGTAACTCATCTGAGGCATCTCTTGTTAGTCCTCCGGTATTAAAGCAGGTCAAGAACAAGGTCTTGCATGAGAAATATATTGACCAATTGCATATTAGGGAAGCCAAGAGAAAAACATTAGCCAAAAACACTAAAAAATCCACTGGTGGAATCGATGAAACGAAAAAGAGTCATATTCAGGAAGTGGATCTGAGAACTGCAAAAATTGCCCTGGTTTCTGATGCAAGAGATGCTATCAATAAGCTCAAACATCTGCAGGAAAACTCTTCGGAGTCGGATGATGATGGAATTGCAAGGGATGATGAGGAAGATGAAGATGAGACTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

592

Amino Acids

65.27

Weight (kDa)

9.94

Isoelectric Point (pI)

56.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0010457)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1224
Acc36I ACCTGC 2 cut(s) 994, 1483
AccB7I CCANNNNNTGG 1 cut(s) 989
AccI GTMKAC 1 cut(s) 211
AccII CGCG 1 cut(s) 418
AciI CCGC 4 cut(s) 138, 277, 861, 878
AclWI GGATC 1 cut(s) 1641
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 6 cut(s) 170, 332, 690, 745, 1117, 1366
AfaI GTAC 2 cut(s) 360, 1299
AfiI CCNNNNNNNGG 5 cut(s) 411, 989, 1133, 1313, 1440
AgsI TTSAA 7 cut(s) 287, 292, 370, 378, 436, 571, 812
AhlI ACTAGT 1 cut(s) 662
AjnI CCWGG 3 cut(s) 988, 1371, 1656
AluBI AGCT 6 cut(s) 200, 560, 737, 845, 965, 1690
AluI AGCT 6 cut(s) 200, 560, 737, 845, 965, 1690
Alw21I GWGCWC 1 cut(s) 1269
Alw26I GTCTC 6 cut(s) 6, 493, 525, 718, 1322, 1760
Alw44I GTGCAC 1 cut(s) 1265
AlwI GGATC 1 cut(s) 1641
AlwNI CAGNNNCTG 1 cut(s) 280
AoxI GGCC 3 cut(s) 21, 252, 951
ApaLI GTGCAC 1 cut(s) 1265
ApeKI GCWGC 4 cut(s) 140, 247, 274, 1197
ApoI RAATTY 6 cut(s) 170, 332, 690, 745, 1117, 1366
AspLEI GCGC 1 cut(s) 1225
AspS9I GGNCC 1 cut(s) 1316
AsuC2I CCSGG 1 cut(s) 1023
AsuHPI GGTGA 4 cut(s) 65, 97, 764, 793
AsuNHI GCTAGC 1 cut(s) 973
AvaII GGWCC 1 cut(s) 1316
BaeGI GKGCMC 1 cut(s) 1269
BanII GRGCYC 1 cut(s) 1308
Bbv12I GWGCWC 1 cut(s) 1269
BbvI GCAGC 4 cut(s) 127, 259, 286, 1184
BccI CCATC 4 cut(s) 578, 725, 1327, 1724
BceAI ACGGC 1 cut(s) 672
BciT130I CCWGG 3 cut(s) 990, 1373, 1658
BciVI GTATCC 1 cut(s) 1047
BcnI CCSGG 1 cut(s) 1023
BcoDI GTCTC 6 cut(s) 6, 493, 525, 718, 1322, 1760
BcuI ACTAGT 1 cut(s) 662
BfaI CTAG 4 cut(s) 342, 663, 974, 1341
BfmI CTRYAG 2 cut(s) 141, 1700
BfuAI ACCTGC 2 cut(s) 994, 1483
BfuI GTATCC 1 cut(s) 1047
BglII AGATCT 4 cut(s) 56, 299, 671, 1285
BisI GCNGC 5 cut(s) 141, 248, 275, 278, 1198
BlsI GCNGC 5 cut(s) 142, 249, 276, 279, 1199
BmcAI AGTACT 1 cut(s) 1299
Bme1390I CCNGG 4 cut(s) 990, 1023, 1373, 1658
Bme18I GGWCC 1 cut(s) 1316
BmgT120I GGNCC 1 cut(s) 1316
BmiI GGNNCC 1 cut(s) 1020
BmrFI CCNGG 4 cut(s) 990, 1023, 1373, 1658
BmrI ACTGGG 1 cut(s) 1302
BmsI GCATC 3 cut(s) 1472, 1657, 1666
BmtI GCTAGC 1 cut(s) 977
BmuI ACTGGG 1 cut(s) 1302
BplI GAGNNNNNCTC 7 cut(s) 31, 458, 490, 473, 505, 698, 730
BpmI CTGGAG 1 cut(s) 72
Bpu10I CCTNAGC 1 cut(s) 924
BpuEI CTTGAG 4 cut(s) 239, 831, 1322, 1423
BpuMI CCSGG 1 cut(s) 1023
Bsa29I ATCGAT 1 cut(s) 1599
BsaI GGTCTC 2 cut(s) 525, 718
BsaJI CCNNGG 4 cut(s) 1091, 1129, 1371, 1656
BsaWI WCCGGW 2 cut(s) 241, 1480
BsaXI ACNNNNNCTCC 4 cut(s) 726, 756, 897, 927
Bsc4I CCNNNNNNNGG 5 cut(s) 411, 989, 1133, 1313, 1440
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 3 cut(s) 1020, 1308, 1594
BseBI CCWGG 3 cut(s) 990, 1373, 1658
BseCI ATCGAT 1 cut(s) 1599
BseDI CCNNGG 4 cut(s) 1091, 1129, 1371, 1656
BseGI GGATG 4 cut(s) 463, 1121, 1729, 1750
BseLI CCNNNNNNNGG 5 cut(s) 411, 989, 1133, 1313, 1440
BseMII CTCAG 7 cut(s) 30, 140, 729, 1317, 1349, 1449, 1628
BseNI ACTGG 3 cut(s) 1020, 1308, 1594
BseRI GAGGAG 1 cut(s) 588
BseSI GKGCMC 1 cut(s) 1269
BseXI GCAGC 4 cut(s) 127, 259, 286, 1184
BseYI CCCAGC 1 cut(s) 410
BsgI GTGCAG 1 cut(s) 1017
Bsh1236I CGCG 1 cut(s) 418
Bsh1285I CGRYCG 1 cut(s) 1097
BshFI GGCC 3 cut(s) 23, 254, 953
BshVI ATCGAT 1 cut(s) 1599
BsiEI CGRYCG 1 cut(s) 1097
BsiHKAI GWGCWC 1 cut(s) 1269
BsiSI CCGG 5 cut(s) 118, 242, 251, 1023, 1481
BslI CCNNNNNNNGG 5 cut(s) 411, 989, 1133, 1313, 1440
BsmAI GTCTC 6 cut(s) 6, 493, 525, 718, 1322, 1760
BsnI GGCC 3 cut(s) 23, 254, 953
Bso31I GGTCTC 2 cut(s) 525, 718
Bsp1286I GDGCHC 2 cut(s) 1269, 1308
Bsp143I GATC 6 cut(s) 56, 299, 605, 671, 1285, 1633
Bsp68I TCGCGA 1 cut(s) 418
BspACI CCGC 4 cut(s) 138, 277, 861, 878
BspANI GGCC 3 cut(s) 23, 254, 953
BspCNI CTCAG 7 cut(s) 29, 139, 728, 1318, 1348, 1450, 1629
BspDI ATCGAT 1 cut(s) 1599
BspFNI CGCG 1 cut(s) 418
BspLI GGNNCC 1 cut(s) 1020
BspMAI CTGCAG 2 cut(s) 145, 1704
BspMI ACCTGC 2 cut(s) 994, 1483
BspOI GCTAGC 1 cut(s) 977
BspPI GGATC 1 cut(s) 1641
BspTNI GGTCTC 2 cut(s) 525, 718
BsrFI RCCGGY 1 cut(s) 250
BsrI ACTGG 3 cut(s) 1020, 1308, 1594
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 4 cut(s) 1091, 1129, 1371, 1656
BssMI GATC 6 cut(s) 56, 299, 605, 671, 1285, 1633
BssT1I CCWWGG 1 cut(s) 1129
Bst2UI CCWGG 3 cut(s) 990, 1373, 1658
Bst4CI ACNGT 3 cut(s) 233, 817, 1234
Bst6I CTCTTC 2 cut(s) 884, 1717
BstAPI GCANNNNNTGC 2 cut(s) 1652, 1676
BstC8I GCNNGC 2 cut(s) 252, 975
BstF5I GGATG 4 cut(s) 463, 1121, 1729, 1750
BstFNI CGCG 1 cut(s) 418
BstHHI GCGC 1 cut(s) 1225
BstKTI GATC 6 cut(s) 59, 302, 608, 674, 1288, 1636
BstMAI GTCTC 6 cut(s) 6, 493, 525, 718, 1322, 1760
BstMBI GATC 6 cut(s) 56, 299, 605, 671, 1285, 1633
BstMCI CGRYCG 1 cut(s) 1097
BstMWI GCNNNNNNNGC 3 cut(s) 979, 1652, 1676
BstNI CCWGG 3 cut(s) 990, 1373, 1658
BstSCI CCNGG 4 cut(s) 988, 1021, 1371, 1656
BstSFI CTRYAG 2 cut(s) 141, 1700
BstSLI GKGCMC 1 cut(s) 1269
BstUI CGCG 1 cut(s) 418
BstV1I GCAGC 4 cut(s) 127, 259, 286, 1184
BstX2I RGATCY 5 cut(s) 56, 299, 671, 1285, 1633
BstYI RGATCY 5 cut(s) 56, 299, 671, 1285, 1633
Bsu15I ATCGAT 1 cut(s) 1599
BsuI GTATCC 1 cut(s) 1047
BsuRI GGCC 3 cut(s) 23, 254, 953
BsuTUI ATCGAT 1 cut(s) 1599
BtsCI GGATG 4 cut(s) 463, 1121, 1729, 1750
BtsIMutI CAGTG 4 cut(s) 24, 586, 1315, 1587
BtuMI TCGCGA 1 cut(s) 418
BveI ACCTGC 2 cut(s) 994, 1483
Cac8I GCNNGC 2 cut(s) 252, 975
CaiI CAGNNNCTG 1 cut(s) 280
CfoI GCGC 1 cut(s) 1225
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 1316
ClaI ATCGAT 1 cut(s) 1599
Csp6I GTAC 2 cut(s) 359, 1298
CviAII CATG 2 cut(s) 1193, 1514
CviQI GTAC 2 cut(s) 359, 1298
DpnI GATC 6 cut(s) 58, 301, 607, 673, 1287, 1635
DpnII GATC 6 cut(s) 56, 299, 605, 671, 1285, 1633
DraI TTTAAA 2 cut(s) 175, 337
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 2 cut(s) 884, 1717
EarI CTCTTC 2 cut(s) 884, 1717
Eco130I CCWWGG 1 cut(s) 1129
Eco24I GRGCYC 1 cut(s) 1308
Eco31I GGTCTC 2 cut(s) 525, 718
Eco47I GGWCC 1 cut(s) 1316
EcoRI GAATTC 1 cut(s) 745
EcoRII CCWGG 3 cut(s) 988, 1371, 1656
EcoT14I CCWWGG 1 cut(s) 1129
EcoT38I GRGCYC 1 cut(s) 1308
ErhI CCWWGG 1 cut(s) 1129
FaeI CATG 2 cut(s) 1196, 1517
FatI CATG 2 cut(s) 1192, 1513
FblI GTMKAC 1 cut(s) 211
Fnu4HI GCNGC 5 cut(s) 141, 248, 275, 278, 1198
FokI GGATG 4 cut(s) 470, 1108, 1736, 1757
FriOI GRGCYC 1 cut(s) 1308
Fsp4HI GCNGC 5 cut(s) 141, 248, 275, 278, 1198
FspBI CTAG 4 cut(s) 342, 663, 974, 1341
FspI TGCGCA 1 cut(s) 1224
GlaI GCGC 1 cut(s) 1224
GluI GCNGC 5 cut(s) 141, 248, 275, 278, 1198
GsaI CCCAGC 1 cut(s) 414
GsuI CTGGAG 1 cut(s) 72
HaeIII GGCC 3 cut(s) 23, 254, 953
HapII CCGG 5 cut(s) 118, 242, 251, 1023, 1481
HhaI GCGC 1 cut(s) 1225
Hin1II CATG 2 cut(s) 1196, 1517
Hin6I GCGC 1 cut(s) 1223
HinP1I GCGC 1 cut(s) 1223
HincII GTYRAC 1 cut(s) 640
HindII GTYRAC 1 cut(s) 640
HindIII AAGCTT 1 cut(s) 198
HpaII CCGG 5 cut(s) 118, 242, 251, 1023, 1481
HphI GGTGA 4 cut(s) 65, 97, 764, 793
Hpy166II GTNNAC 5 cut(s) 212, 640, 933, 1157, 1267
Hpy8I GTNNAC 5 cut(s) 212, 640, 933, 1157, 1267
Hpy99I CGWCG 1 cut(s) 606
HpyAV CCTTC 6 cut(s) 177, 217, 703, 821, 1362, 1400
HpyCH4III ACNGT 3 cut(s) 233, 817, 1234
HpyF10VI GCNNNNNNNGC 3 cut(s) 979, 1652, 1676
Hsp92II CATG 2 cut(s) 1196, 1517
HspAI GCGC 1 cut(s) 1223
KroI GCCGGC 1 cut(s) 250
KroNI GCCGGC 1 cut(s) 252
Kzo9I GATC 6 cut(s) 56, 299, 605, 671, 1285, 1633
LmnI GCTCC 3 cut(s) 244, 734, 771
Lsp1109I GCAGC 4 cut(s) 127, 259, 286, 1184
LweI GCATC 3 cut(s) 1472, 1657, 1666
MaeI CTAG 4 cut(s) 342, 663, 974, 1341
MaeIII GTNAC 2 cut(s) 227, 1448
MalI GATC 6 cut(s) 58, 301, 607, 673, 1287, 1635
MboI GATC 6 cut(s) 56, 299, 605, 671, 1285, 1633
MfeI CAATTG 2 cut(s) 378, 1532
MflI RGATCY 5 cut(s) 56, 299, 671, 1285, 1633
MhlI GDGCHC 2 cut(s) 1269, 1308
MlyI GAGTC 6 cut(s) 8, 495, 589, 1184, 1624, 1727
MmeI TCCRAC 3 cut(s) 291, 1385, 1701
MroNI GCCGGC 1 cut(s) 250
MseI TTAA 4 cut(s) 174, 336, 1164, 1487
MspA1I CMGCKG 2 cut(s) 140, 277
MspI CCGG 5 cut(s) 118, 242, 251, 1023, 1481
MspR9I CCNGG 4 cut(s) 990, 1023, 1373, 1658
MunI CAATTG 2 cut(s) 378, 1532
MvaI CCWGG 3 cut(s) 990, 1373, 1658
MvnI CGCG 1 cut(s) 418
MwoI GCNNNNNNNGC 3 cut(s) 979, 1652, 1676
NaeI GCCGGC 1 cut(s) 252
NciI CCSGG 1 cut(s) 1023
NdeII GATC 6 cut(s) 56, 299, 605, 671, 1285, 1633
NgoMIV GCCGGC 1 cut(s) 250
NheI GCTAGC 1 cut(s) 973
NlaIII CATG 2 cut(s) 1196, 1517
NlaIV GGNNCC 1 cut(s) 1020
NruI TCGCGA 1 cut(s) 418
NsbI TGCGCA 1 cut(s) 1224
PdiI GCCGGC 1 cut(s) 252
PfeI GAWTC 9 cut(s) 146, 259, 370, 422, 436, 470, 506, 1386, 1596
PflMI CCANNNNNTGG 1 cut(s) 989
PfoI TCCNGGA 1 cut(s) 1021
PkrI GCNGC 5 cut(s) 142, 249, 276, 279, 1199
PleI GAGTC 6 cut(s) 8, 494, 589, 1183, 1623, 1726
PpsI GAGTC 6 cut(s) 8, 494, 589, 1183, 1623, 1726
Psp6I CCWGG 3 cut(s) 988, 1371, 1656
PspFI CCCAGC 1 cut(s) 410
PspGI CCWGG 3 cut(s) 988, 1371, 1656
PspN4I GGNNCC 1 cut(s) 1020
PspPI GGNCC 1 cut(s) 1316
PsrI GAACNNNNNNTAC 2 cut(s) 778, 810
PstI CTGCAG 2 cut(s) 145, 1704
PstNI CAGNNNCTG 1 cut(s) 280
PsuI RGATCY 5 cut(s) 56, 299, 671, 1285, 1633
RruI TCGCGA 1 cut(s) 418
RsaI GTAC 2 cut(s) 360, 1299
RsaNI GTAC 2 cut(s) 359, 1298
SaqAI TTAA 4 cut(s) 174, 336, 1164, 1487
SatI GCNGC 5 cut(s) 141, 248, 275, 278, 1198
Sau3AI GATC 6 cut(s) 56, 299, 605, 671, 1285, 1633
Sau96I GGNCC 1 cut(s) 1316
ScaI AGTACT 1 cut(s) 1299
SchI GAGTC 6 cut(s) 8, 495, 589, 1184, 1624, 1727
ScrFI CCNGG 4 cut(s) 990, 1023, 1373, 1658
SduI GDGCHC 2 cut(s) 1269, 1308
SfaNI GCATC 3 cut(s) 1472, 1657, 1666
SfcI CTRYAG 2 cut(s) 141, 1700
SinI GGWCC 1 cut(s) 1316
SmiI ATTTAAAT 1 cut(s) 337
SmlI CTYRAG 4 cut(s) 218, 846, 1301, 1438
SmoI CTYRAG 4 cut(s) 218, 846, 1301, 1438
SpeI ACTAGT 1 cut(s) 662
SsiI CCGC 4 cut(s) 138, 277, 861, 878
SspMI CTAG 4 cut(s) 342, 663, 974, 1341
StyD4I CCNGG 4 cut(s) 988, 1021, 1371, 1656
StyI CCWWGG 1 cut(s) 1129
SwaI ATTTAAAT 1 cut(s) 337
TaaI ACNGT 3 cut(s) 233, 817, 1234
TaqI TCGA 6 cut(s) 386, 539, 601, 611, 1097, 1599
TaqII GACCGA 1 cut(s) 1083
TatI WGTACW 1 cut(s) 1297
TauI GCSGC 1 cut(s) 280
TfiI GAWTC 9 cut(s) 146, 259, 370, 422, 436, 470, 506, 1386, 1596
Tru1I TTAA 4 cut(s) 174, 336, 1164, 1487
Tru9I TTAA 4 cut(s) 174, 336, 1164, 1487
TscAI CASTG 4 cut(s) 24, 586, 1315, 1594
TseI GCWGC 4 cut(s) 140, 247, 274, 1197
TspDTI ATGAA 4 cut(s) 474, 1110, 1617, 1773
TspRI CASTG 4 cut(s) 24, 586, 1315, 1594
Van91I CCANNNNNTGG 1 cut(s) 989
VneI GTGCAC 1 cut(s) 1265
VpaK11BI GGWCC 1 cut(s) 1316
XapI RAATTY 6 cut(s) 170, 332, 690, 745, 1117, 1366
XbaI TCTAGA 1 cut(s) 341
XcmI CCANNNNNNNNNTGG 1 cut(s) 694
XmiI GTMKAC 1 cut(s) 211
XspI CTAG 4 cut(s) 342, 663, 974, 1341
ZrmI AGTACT 1 cut(s) 1299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.