pycom15g27070
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010457
Physical Location & Seq
Forward (+)
22311605 .. 22315030
3426 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g27070.1

Sequence Viewer

Length: 915 bp
ATGCAAGAGATAGATGGTGTAAATAAAGAAGTGGGGGTTAGGAGGAAGAGAAAGAGGGACGAAGAAGGTGTTGGGGTTGTTCAAGGGTGGACAAAGGAACAAGAATTGGCATTGCAGAGAGCTTATTTAATAGCAAAGCCAACACCCCACTTCTGGAAGAAGGTTTCCAAACTGGTGCCTGGAAAATCTGCACAGGAGTGCTTTGATAGAGTCCATTCTGAGCATAGAACTCCACCTCAACCTCATACCCGGTCGAGGGCAAACACATTAACAAATTCGTCCCCCCTTGGACAGTTTTCACTCTCTGCAAGTAAACTGCTTAAACCCAGTGAGCCAAAGTCTAAAAGGCAAGAATGCAGTAAACAGAGGAGGCATGTTGCCCAGAAAACAGTCCGACAATTATTACAAAAACATTATCAAGTGTACCAAGATTATGAGGGAGATCTTTTTAGGGTACTCGAGCCCAGTCTAGGTTCACCTAGCGAGAGTCATGCAAGTGGTATACCTTCTACCCCAAAAAATTTACAGGAAAAGAAGAAAATTCTTCAGAATCGCAGCCAAAGTTCTTCAGGTCATAAGAAGCCGCTGTCGAGATTTAGTAGCTCATGTGGTAAACCTCTCGTTAGCCCCCCGGTATTGAAGCAAGTCAGAAACAAGGTCCGGCATGAGAAGTATATAGACCAATTACATACCAGGGAAGCGAAGAGAAAAGCAGCATCTACGCGCACTCAGCAATCCACTTCTGGAATTGGTGAAGTGGATGCAGTGAGAACTGCAAAAATTGCCCTGGTTTCTGATGCAAGAGATGCTATCAATAAACTCCAACATCTGCAGGCCAATGTTACCGGTGACTCTTCTGATTTCGACGATGGTGGCATTATAAGTGATGACGAGGAGGGTGAAGATGATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

305

Amino Acids

34.02

Weight (kDa)

9.74

Isoelectric Point (pI)

63.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53440 AT3G53440
fragaria_vesca FvH4_1g18920
malus_domestica MD01G1045600.v1.1 MD15G1306300.v1.1
prunus_persica Prupe.6G210300_v2.0.a1
pyrus_communis pycom01g07170 pycom15g27060 pycom15g27070
rosa_chinensis RchiOBHm_Chr2g0109931
rosa_laevigata RLG00000017770 RLG00000036544
rosa_multiflora Rmu_sc0005173.1_g000019
rosa_roxburghii Rroxscaffold_2G00133870
rosa_rugosa Rorug02G0163900
rosa_samantha Rh2AG215900 Rh2BG225900 Rh2CG218100 Rh2DG221400 Rh5DG403700
rosa_wichuraiana Rw2G016670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 881
AccB1I GGYRCC 1 cut(s) 175
AccI GTMKAC 1 cut(s) 502
AccII CGCG 1 cut(s) 724
AciI CCGC 1 cut(s) 584
AcsI RAATTY 3 cut(s) 274, 520, 540
AcuI CTGAAG 2 cut(s) 530, 552
AfaI GTAC 2 cut(s) 425, 456
AfiI CCNNNNNNNGG 4 cut(s) 153, 255, 256, 470
AgeI ACCGGT 1 cut(s) 845
AgsI TTSAA 2 cut(s) 83, 640
AjnI CCWGG 3 cut(s) 178, 692, 786
AjuI GAANNNNNNNTTGG 2 cut(s) 54, 86
AleI CACNNNNGTG 1 cut(s) 196
AluBI AGCT 2 cut(s) 122, 603
AluI AGCT 2 cut(s) 122, 603
Ama87I CYCGRG 1 cut(s) 458
AoxI GGCC 1 cut(s) 834
ApeKI GCWGC 2 cut(s) 555, 713
ApoI RAATTY 3 cut(s) 274, 520, 540
AsiGI ACCGGT 1 cut(s) 845
AspLEI GCGC 1 cut(s) 726
AspS9I GGNCC 1 cut(s) 658
AsuC2I CCSGG 2 cut(s) 250, 632
AsuHPI GGTGA 4 cut(s) 468, 764, 860, 911
AvaI CYCGRG 1 cut(s) 458
AvaII GGWCC 1 cut(s) 658
BanI GGYRCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 465
BbvI GCAGC 2 cut(s) 567, 725
BccI CCATC 2 cut(s) 8, 863
BcgI CGANNNNNNTGC 2 cut(s) 473, 507
BciT130I CCWGG 3 cut(s) 180, 694, 788
BcnI CCSGG 2 cut(s) 250, 632
BfaI CTAG 2 cut(s) 470, 480
BfmI CTRYAG 1 cut(s) 830
BglII AGATCT 1 cut(s) 442
BisI GCNGC 3 cut(s) 556, 584, 714
BlsI GCNGC 3 cut(s) 557, 585, 715
Bme1390I CCNGG 5 cut(s) 180, 250, 632, 694, 788
Bme18I GGWCC 1 cut(s) 658
BmeT110I CYCGRG 1 cut(s) 458
BmgT120I GGNCC 1 cut(s) 658
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 5 cut(s) 180, 250, 632, 694, 788
BmrI ACTGGG 2 cut(s) 321, 459
BmsI GCATC 5 cut(s) 725, 751, 787, 796, 898
BmuI ACTGGG 2 cut(s) 321, 459
BpuMI CCSGG 2 cut(s) 250, 632
BsaJI CCNNGG 4 cut(s) 286, 630, 693, 786
BsaWI WCCGGW 1 cut(s) 845
Bsc4I CCNNNNNNNGG 4 cut(s) 153, 255, 256, 470
Bse118I RCCGGY 1 cut(s) 845
Bse1I ACTGG 3 cut(s) 177, 327, 465
Bse3DI GCAATG 1 cut(s) 110
BseBI CCWGG 3 cut(s) 180, 694, 788
BseDI CCNNGG 4 cut(s) 286, 630, 693, 786
BseGI GGATG 1 cut(s) 766
BseLI CCNNNNNNNGG 4 cut(s) 153, 255, 256, 470
BseMI GCAATG 1 cut(s) 110
BseMII CTCAG 2 cut(s) 210, 743
BseNI ACTGG 3 cut(s) 177, 327, 465
BseRI GAGGAG 2 cut(s) 382, 908
BseXI GCAGC 2 cut(s) 567, 725
BsgI GTGCAG 1 cut(s) 174
Bsh1236I CGCG 1 cut(s) 724
Bsh1285I CGRYCG 1 cut(s) 254
BshFI GGCC 1 cut(s) 836
BshNI GGYRCC 1 cut(s) 175
BshTI ACCGGT 1 cut(s) 845
BsiEI CGRYCG 1 cut(s) 254
BsiHKCI CYCGRG 1 cut(s) 458
BsiSI CCGG 4 cut(s) 250, 632, 661, 846
BslFI GGGAC 2 cut(s) 71, 265
BslI CCNNNNNNNGG 4 cut(s) 153, 255, 256, 470
BsmFI GGGAC 2 cut(s) 71, 265
BsmI GAATGC 1 cut(s) 359
BsnI GGCC 1 cut(s) 836
BsoBI CYCGRG 1 cut(s) 458
Bsp1286I GDGCHC 1 cut(s) 465
Bsp143I GATC 1 cut(s) 442
BspACI CCGC 1 cut(s) 584
BspANI GGCC 1 cut(s) 836
BspCNI CTCAG 2 cut(s) 211, 742
BspFNI CGCG 1 cut(s) 724
BspLI GGNNCC 1 cut(s) 177
BspMAI CTGCAG 1 cut(s) 834
BspT107I GGYRCC 1 cut(s) 175
BsrDI GCAATG 1 cut(s) 110
BsrFI RCCGGY 1 cut(s) 845
BsrI ACTGG 3 cut(s) 177, 327, 465
BssAI RCCGGY 1 cut(s) 845
BssECI CCNNGG 4 cut(s) 286, 630, 693, 786
BssMI GATC 1 cut(s) 442
BssNAI GTATAC 1 cut(s) 503
BssT1I CCWWGG 1 cut(s) 286
Bst1107I GTATAC 1 cut(s) 503
Bst2UI CCWGG 3 cut(s) 180, 694, 788
Bst4CI ACNGT 2 cut(s) 294, 391
Bst6I CTCTTC 3 cut(s) 41, 698, 859
BstAPI GCANNNNNTGC 2 cut(s) 782, 806
BstC8I GCNNGC 1 cut(s) 834
BstDEI CTNAG 3 cut(s) 219, 729, 912
BstF5I GGATG 1 cut(s) 766
BstFNI CGCG 1 cut(s) 724
BstHHI GCGC 1 cut(s) 726
BstKTI GATC 1 cut(s) 445
BstMBI GATC 1 cut(s) 442
BstMCI CGRYCG 1 cut(s) 254
BstMWI GCNNNNNNNGC 3 cut(s) 730, 782, 806
BstNI CCWGG 3 cut(s) 180, 694, 788
BstNSI RCATGY 1 cut(s) 377
BstSCI CCNGG 5 cut(s) 178, 248, 630, 692, 786
BstSFI CTRYAG 1 cut(s) 830
BstUI CGCG 1 cut(s) 724
BstV1I GCAGC 2 cut(s) 567, 725
BstX2I RGATCY 1 cut(s) 442
BstYI RGATCY 1 cut(s) 442
BstZ17I GTATAC 1 cut(s) 503
BsuRI GGCC 1 cut(s) 836
BtsCI GGATG 1 cut(s) 766
BtsI GCAGTG 1 cut(s) 771
BtsIMutI CAGTG 2 cut(s) 334, 771
Cac8I GCNNGC 1 cut(s) 834
CfoI GCGC 1 cut(s) 726
Cfr10I RCCGGY 1 cut(s) 845
Cfr13I GGNCC 1 cut(s) 658
Csp6I GTAC 2 cut(s) 424, 455
CspAI ACCGGT 1 cut(s) 845
CviAII CATG 4 cut(s) 374, 491, 606, 665
CviJI RGCY 9 cut(s) 122, 139, 334, 463, 558, 583, 603, 627, 836
CviKI_1 RGCY 9 cut(s) 122, 139, 334, 463, 558, 583, 603, 627, 836
CviQI GTAC 2 cut(s) 424, 455
DdeI CTNAG 3 cut(s) 219, 729, 912
DpnI GATC 1 cut(s) 444
DpnII GATC 1 cut(s) 442
Eam1104I CTCTTC 3 cut(s) 41, 698, 859
EarI CTCTTC 3 cut(s) 41, 698, 859
Eco130I CCWWGG 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 465
Eco47I GGWCC 1 cut(s) 658
Eco57I CTGAAG 2 cut(s) 530, 552
Eco88I CYCGRG 1 cut(s) 458
EcoRII CCWGG 3 cut(s) 178, 692, 786
EcoT14I CCWWGG 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 4 cut(s) 377, 494, 609, 668
FaqI GGGAC 2 cut(s) 71, 265
FatI CATG 4 cut(s) 373, 490, 605, 664
FblI GTMKAC 1 cut(s) 502
Fnu4HI GCNGC 3 cut(s) 556, 584, 714
FokI GGATG 1 cut(s) 773
FriOI GRGCYC 1 cut(s) 465
Fsp4HI GCNGC 3 cut(s) 556, 584, 714
FspBI CTAG 2 cut(s) 470, 480
GlaI GCGC 1 cut(s) 725
GluI GCNGC 3 cut(s) 556, 584, 714
HaeIII GGCC 1 cut(s) 836
HapII CCGG 4 cut(s) 250, 632, 661, 846
HhaI GCGC 1 cut(s) 726
Hin1II CATG 4 cut(s) 377, 494, 609, 668
Hin6I GCGC 1 cut(s) 724
HinP1I GCGC 1 cut(s) 724
HinfI GANTC 4 cut(s) 210, 487, 550, 851
HpaII CCGG 4 cut(s) 250, 632, 661, 846
HphI GGTGA 4 cut(s) 468, 764, 860, 911
Hpy166II GTNNAC 7 cut(s) 90, 314, 362, 424, 476, 503, 614
Hpy188I TCNGA 6 cut(s) 220, 395, 549, 650, 796, 859
Hpy188III TCNNGA 3 cut(s) 154, 591, 744
Hpy8I GTNNAC 7 cut(s) 90, 314, 362, 424, 476, 503, 614
Hpy99I CGWCG 1 cut(s) 869
HpyAV CCTTC 3 cut(s) 59, 154, 516
HpyCH4III ACNGT 2 cut(s) 294, 391
HpyF10VI GCNNNNNNNGC 3 cut(s) 730, 782, 806
HpyF3I CTNAG 3 cut(s) 219, 729, 912
Hsp92II CATG 4 cut(s) 377, 494, 609, 668
HspAI GCGC 1 cut(s) 724
Kzo9I GATC 1 cut(s) 442
Lsp1109I GCAGC 2 cut(s) 567, 725
LweI GCATC 5 cut(s) 725, 751, 787, 796, 898
MaeI CTAG 2 cut(s) 470, 480
MaeIII GTNAC 2 cut(s) 841, 848
MalI GATC 1 cut(s) 444
MboI GATC 1 cut(s) 442
MboII GAAGA 9 cut(s) 58, 74, 169, 536, 547, 558, 715, 846, 914
MflI RGATCY 1 cut(s) 442
MhlI GDGCHC 1 cut(s) 465
MluCI AATT 8 cut(s) 104, 274, 398, 520, 540, 683, 747, 780
MlyI GAGTC 3 cut(s) 219, 496, 845
MmeI TCCRAC 2 cut(s) 418, 847
MseI TTAA 3 cut(s) 128, 269, 321
MslI CAYNNNNRTG 2 cut(s) 196, 495
MspA1I CMGCKG 1 cut(s) 586
MspI CCGG 4 cut(s) 250, 632, 661, 846
MspR9I CCNGG 5 cut(s) 180, 250, 632, 694, 788
Mva1269I GAATGC 1 cut(s) 359
MvaI CCWGG 3 cut(s) 180, 694, 788
MvnI CGCG 1 cut(s) 724
MwoI GCNNNNNNNGC 3 cut(s) 730, 782, 806
NciI CCSGG 2 cut(s) 250, 632
NdeII GATC 1 cut(s) 442
NlaIII CATG 4 cut(s) 377, 494, 609, 668
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 848
NspI RCATGY 1 cut(s) 377
OliI CACNNNNGTG 1 cut(s) 196
PaeR7I CTCGAG 1 cut(s) 458
PctI GAATGC 1 cut(s) 359
PfeI GAWTC 1 cut(s) 550
PinAI ACCGGT 1 cut(s) 845
PkrI GCNGC 3 cut(s) 557, 585, 715
PleI GAGTC 3 cut(s) 218, 495, 845
PpsI GAGTC 3 cut(s) 218, 495, 845
PsiI TTATAA 1 cut(s) 881
Psp6I CCWGG 3 cut(s) 178, 692, 786
PspGI CCWGG 3 cut(s) 178, 692, 786
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 658
PspXI VCTCGAGB 1 cut(s) 458
PstI CTGCAG 1 cut(s) 834
PsuI RGATCY 1 cut(s) 442
RsaI GTAC 2 cut(s) 425, 456
RsaNI GTAC 2 cut(s) 424, 455
RseI CAYNNNNRTG 2 cut(s) 196, 495
SaqAI TTAA 3 cut(s) 128, 269, 321
SatI GCNGC 3 cut(s) 556, 584, 714
Sau3AI GATC 1 cut(s) 442
Sau96I GGNCC 1 cut(s) 658
SchI GAGTC 3 cut(s) 219, 496, 845
ScrFI CCNGG 5 cut(s) 180, 250, 632, 694, 788
SduI GDGCHC 1 cut(s) 465
SfaNI GCATC 5 cut(s) 725, 751, 787, 796, 898
SfcI CTRYAG 1 cut(s) 830
Sfr274I CTCGAG 1 cut(s) 458
SinI GGWCC 1 cut(s) 658
SlaI CTCGAG 1 cut(s) 458
SmiMI CAYNNNNRTG 2 cut(s) 196, 495
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 8 cut(s) 104, 274, 398, 520, 540, 683, 747, 780
SsiI CCGC 1 cut(s) 584
SspMI CTAG 2 cut(s) 470, 480
StyD4I CCNGG 5 cut(s) 178, 248, 630, 692, 786
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 2 cut(s) 294, 391
TaqI TCGA 4 cut(s) 254, 459, 590, 864
TasI AATT 8 cut(s) 104, 274, 398, 520, 540, 683, 747, 780
TauI GCSGC 1 cut(s) 586
TfiI GAWTC 1 cut(s) 550
Tru1I TTAA 3 cut(s) 128, 269, 321
Tru9I TTAA 3 cut(s) 128, 269, 321
TscAI CASTG 2 cut(s) 334, 771
TseFI GTSAC 1 cut(s) 848
TseI GCWGC 2 cut(s) 555, 713
Tsp45I GTSAC 1 cut(s) 848
TspRI CASTG 2 cut(s) 334, 771
VpaK11BI GGWCC 1 cut(s) 658
XapI RAATTY 3 cut(s) 274, 520, 540
XceI RCATGY 1 cut(s) 377
XhoI CTCGAG 1 cut(s) 458
XmiI GTMKAC 1 cut(s) 502
XspI CTAG 2 cut(s) 470, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.