pycom15g27060
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010457
Physical Location & Seq
Forward (+)
22310961 .. 22311251
291 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g27060.1

Sequence Viewer

Length: 291 bp
ATGGCCGTGAGAGCCTCCGTAGCCAAGGCAGCACAACAGAGCACAACTCTCCGAAGGTCTCCTAGATTTCTCCACCACCAGAAAACTCAAGAACCAGAGCTGTCCATCGCCACTGTCCGGAAATCTCAGAGACTTGTCTGCCTTGAAAAGAGCGCTGCGGAGTCTGAAAACCCGAGAACCCCCAAATCCACAGCCAGAAGCAACCGTGTCGTATGTTCATTGAGTCTTCCACTTAGCTCTAAGAATTCGAGTGAATCTCACGATGGGCCGAGAAGATCGATCCGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

97

Amino Acids

10.64

Weight (kDa)

11.13

Isoelectric Point (pI)

70.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53440 AT3G53440
fragaria_vesca FvH4_1g18920
malus_domestica MD01G1045600.v1.1 MD15G1306300.v1.1
prunus_persica Prupe.6G210300_v2.0.a1
pyrus_communis pycom01g07170 pycom15g27060 pycom15g27070
rosa_chinensis RchiOBHm_Chr2g0109931
rosa_laevigata RLG00000017770 RLG00000036544
rosa_multiflora Rmu_sc0005173.1_g000019
rosa_roxburghii Rroxscaffold_2G00133870
rosa_rugosa Rorug02G0163900
rosa_samantha Rh2AG215900 Rh2BG225900 Rh2CG218100 Rh2DG221400 Rh5DG403700
rosa_wichuraiana Rw2G016670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 117
AciI CCGC 1 cut(s) 158
AclWI GGATC 1 cut(s) 274
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 244
AfeI AGCGCT 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 1 cut(s) 146
AluBI AGCT 2 cut(s) 100, 237
AluI AGCT 2 cut(s) 100, 237
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 2 cut(s) 63, 124
AlwI GGATC 1 cut(s) 274
Ama87I CYCGRG 1 cut(s) 172
Aor13HI TCCGGA 1 cut(s) 117
Aor51HI AGCGCT 1 cut(s) 154
AoxI GGCC 2 cut(s) 3, 266
ApeKI GCWGC 2 cut(s) 29, 155
ApoI RAATTY 1 cut(s) 244
AspLEI GCGC 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 266
AvaI CYCGRG 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 2 cut(s) 41, 142
BccI CCATC 2 cut(s) 113, 257
BcgI CGANNNNNNTGC 2 cut(s) 190, 224
BcoDI GTCTC 2 cut(s) 63, 124
BfaI CTAG 1 cut(s) 63
BfoI RGCGCY 1 cut(s) 156
BisI GCNGC 2 cut(s) 30, 156
BlsI GCNGC 2 cut(s) 31, 157
BmeT110I CYCGRG 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 266
BpiI GAAGAC 1 cut(s) 218
BplI GAGNNNNNCTC 4 cut(s) 31, 63, 241, 273
BpuEI CTTGAG 1 cut(s) 72
Bsa29I ATCGAT 1 cut(s) 278
BsaI GGTCTC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 24
BsaWI WCCGGW 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 117
BseAI TCCGGA 1 cut(s) 117
BseCI ATCGAT 1 cut(s) 278
BseDI CCNNGG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 140
BseXI GCAGC 2 cut(s) 41, 142
BshFI GGCC 2 cut(s) 5, 268
BshVI ATCGAT 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 44
BsiHKCI CYCGRG 1 cut(s) 172
BsiSI CCGG 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 2 cut(s) 63, 124
BsnI GGCC 2 cut(s) 5, 268
Bso31I GGTCTC 1 cut(s) 63
BsoBI CYCGRG 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 44
Bsp13I TCCGGA 1 cut(s) 117
Bsp143I GATC 2 cut(s) 275, 279
BspACI CCGC 1 cut(s) 158
BspANI GGCC 2 cut(s) 5, 268
BspCNI CTCAG 1 cut(s) 139
BspDI ATCGAT 1 cut(s) 278
BspEI TCCGGA 1 cut(s) 117
BspPI GGATC 1 cut(s) 274
BspTNI GGTCTC 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 2 cut(s) 275, 279
BssT1I CCWWGG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 115, 206
BstDEI CTNAG 3 cut(s) 126, 233, 240
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 2 cut(s) 278, 282
BstMAI GTCTC 2 cut(s) 63, 124
BstMBI GATC 2 cut(s) 275, 279
BstMWI GCNNNNNNNGC 3 cut(s) 11, 20, 29
BstV1I GCAGC 2 cut(s) 41, 142
BstV2I GAAGAC 1 cut(s) 218
Bsu15I ATCGAT 1 cut(s) 278
BsuRI GGCC 2 cut(s) 5, 268
BsuTUI ATCGAT 1 cut(s) 278
BtgZI GCGATG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 111
CfoI GCGC 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 266
ClaI ATCGAT 1 cut(s) 278
CviJI RGCY 7 cut(s) 5, 14, 23, 100, 194, 237, 268
CviKI_1 RGCY 7 cut(s) 5, 14, 23, 100, 194, 237, 268
DdeI CTNAG 3 cut(s) 126, 233, 240
DpnI GATC 2 cut(s) 277, 281
DpnII GATC 2 cut(s) 275, 279
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 63
Eco47III AGCGCT 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 172
EcoRI GAATTC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 24
FaiI YATR 1 cut(s) 214
Fnu4HI GCNGC 2 cut(s) 30, 156
Fsp4HI GCNGC 2 cut(s) 30, 156
FspBI CTAG 1 cut(s) 63
GlaI GCGC 1 cut(s) 154
GluI GCNGC 2 cut(s) 30, 156
HaeII RGCGCY 1 cut(s) 156
HaeIII GGCC 2 cut(s) 5, 268
HapII CCGG 1 cut(s) 118
HhaI GCGC 1 cut(s) 155
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HinfI GANTC 3 cut(s) 161, 223, 254
HpaII CCGG 1 cut(s) 118
Hpy188I TCNGA 4 cut(s) 53, 129, 166, 284
Hpy188III TCNNGA 3 cut(s) 89, 118, 260
HpyAV CCTTC 1 cut(s) 48
HpyCH4III ACNGT 2 cut(s) 115, 206
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 20, 29
HpyF3I CTNAG 3 cut(s) 126, 233, 240
HspAI GCGC 1 cut(s) 153
Kpn2I TCCGGA 1 cut(s) 117
Kzo9I GATC 2 cut(s) 275, 279
LpnPI CCDG 4 cut(s) 92, 108, 131, 208
Lsp1109I GCAGC 2 cut(s) 41, 142
MaeI CTAG 1 cut(s) 63
MalI GATC 2 cut(s) 277, 281
MboI GATC 2 cut(s) 275, 279
MboII GAAGA 2 cut(s) 218, 285
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 1 cut(s) 244
MlyI GAGTC 2 cut(s) 170, 232
MnlI CCTC 1 cut(s) 25
MroI TCCGGA 1 cut(s) 117
MspI CCGG 1 cut(s) 118
MwoI GCNNNNNNNGC 3 cut(s) 11, 20, 29
NdeII GATC 2 cut(s) 275, 279
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 2 cut(s) 31, 157
PleI GAGTC 2 cut(s) 169, 231
PpsI GAGTC 2 cut(s) 169, 231
PspPI GGNCC 1 cut(s) 266
SatI GCNGC 2 cut(s) 30, 156
Sau3AI GATC 2 cut(s) 275, 279
Sau96I GGNCC 1 cut(s) 266
SchI GAGTC 2 cut(s) 170, 232
SduI GDGCHC 1 cut(s) 44
SetI ASST 3 cut(s) 59, 102, 239
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
Sse9I AATT 1 cut(s) 244
SsiI CCGC 1 cut(s) 158
SspMI CTAG 1 cut(s) 63
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 2 cut(s) 115, 206
TaqI TCGA 2 cut(s) 248, 278
TasI AATT 1 cut(s) 244
TfiI GAWTC 1 cut(s) 254
TscAI CASTG 1 cut(s) 118
TseI GCWGC 2 cut(s) 29, 155
TspDTI ATGAA 1 cut(s) 207
TspGWI ACGGA 1 cut(s) 7
TspRI CASTG 1 cut(s) 118
XapI RAATTY 1 cut(s) 244
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.