Rh2BG225900
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0010457
Physical Location & Seq
Forward (+)
21974490 .. 21978471
3982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG225900.1

Sequence Viewer

Length: 1518 bp
ATGAGGAATGCCCACCAGGTGTTTGTGAAAATGCCTGAGAGAGACTCAGTGGCCTCCACACCCCAACAATCCTCAATTCTGCGAAGATCTCCCAGATTTCTTCGCCCCAAGACCACTCCAGAACCACAGAAACTCGCCACACCTCGCCGGAAGCCTCAGAGAAAGACCGCTGCAGAATCCGAAAACCCGAAAACCCCCAAATCCAAATTCAGAAGGAACGGGGCAAAAGCTTTGGATTGTAGACTTCTTGAGAAGAGTAACAGTCCAGAACCGGAGCAAACGGCCACGATTCTCCGAAAGTCGCAGCGGCTTGTGGAATTGAAAGAGAGATCTGGGCAGTTGGAAAACCCTAAAACCCCCAAATTTAAATCTAGAAGCGACAATGTGGTGCGCTCTTTGAATCTTTCGATTGGCTCGAAGAAATTGAGTAAAGCCAATGCTGGGTCGAGAGAATCTAAGGTTTTGAATCAGGAGGTGGTGGTGGTGGTGGATGTAGATGAGGATTCCTCCCCAGAGAGAGTCTCAAAGAAATTGGGGGAATCTCATTATGGGTCAAGAAAAGCTCCAAGATTGAACAATGTCAGTGATGGGTTTCAGACTCCTAGACGATCTTCGAGGTTGGGTGGTAAGCAGAATGTGGTTGACAAACAGACTGATAAGGCAACTAGTGGTAGATCTAAGAGTAAGTCCAAAATTTCTTTGGATAAAGAGAAGGTCTCAGGTGTTCGGAAAGATGGAGCTTGTGTGAATTCAGGCGAAATTGTTTTGGAAAAGAGCAAAAGGGTGAGTAAGAAAAGTTCAGTCGGTGGTGTTGAAACAGTTAGTGTGGAAGGTGTAGAGGGCAAAGCGCAAGAGTTAGATTGCGGAGATAAAAAAGTTGGGGTTAGGAGGAAGAGAAAGAGAGGTGGAGAAGATGTCAAGGTCGCCAAAGGGTGGACAAAGGAACAAGAATTGGCCTTGCAGAGAGCTTATTTGCTAGCAAAGCCGACGCCTGGTTTCTGGAAGCAGGTTTCTAAACTGGTTCCCGGAAAGTCTGCACAGGATTGCTTTGATAGGATACATTCTGACCATATAACCCCACCCCAACCTCGTCCTCGGTCGAGGGCAAAGATTACTACAAATTCATCCCCCCTTGGAGGCTTTTCACTCTCTGCAAGTAGACTGCTTAATCCTGTTGAGTCAAAGGCTAAAGGACATGGCTGCAATAAACAGAGAAGCCATCTTGCGCAGAAAGCTGTCAGAGCATTATTACACAAGCATTATCAAGTGCACCAAGAGTTTGAGGCAGATCTATTTTCAGTACTTGAGCCAAGTGTAGGTCCATCTACTGAGACTTCTCAGCCTAGTGTTATACCTTCTACTCCAACAAATTCACAGGTAAAGCAGGGATTCCTTCACAAGAGCAGTCAAATATCATCTGCGGGTCATAAGAAGCCCCTCTCAAGCTTAATGGAATCCTACGAACCTGAATTTCATCTTGGTTTAAAAGGAAGGGAGAAGGTTAAATGTTTGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

505

Amino Acids

55.76

Weight (kDa)

10.24

Isoelectric Point (pI)

55.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53440 AT3G53440
fragaria_vesca FvH4_1g18920
malus_domestica MD01G1045600.v1.1 MD15G1306300.v1.1
prunus_persica Prupe.6G210300_v2.0.a1
pyrus_communis pycom01g07170 pycom15g27060 pycom15g27070
rosa_chinensis RchiOBHm_Chr2g0109931
rosa_laevigata RLG00000017770 RLG00000036544
rosa_multiflora Rmu_sc0005173.1_g000019
rosa_roxburghii Rroxscaffold_2G00133870
rosa_rugosa Rorug02G0163900
rosa_samantha Rh2AG215900 Rh2BG225900 Rh2CG218100 Rh2DG221400 Rh5DG403700
rosa_wichuraiana Rw2G016670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1227
Acc36I ACCTGC 1 cut(s) 997
AccB7I CCANNNNNTGG 1 cut(s) 933
AccI GTMKAC 2 cut(s) 241, 1159
AciI CCGC 4 cut(s) 168, 307, 864, 1421
AcoI YGGCCR 1 cut(s) 282
AcsI RAATTY 7 cut(s) 206, 362, 693, 748, 1120, 1369, 1469
AcyI GRCGYC 1 cut(s) 989
AdeI CACNNNGTG 1 cut(s) 19
AfaI GTAC 1 cut(s) 1302
AfiI CCNNNNNNNGG 5 cut(s) 441, 933, 992, 1136, 1316
AgsI TTSAA 5 cut(s) 322, 400, 466, 574, 815
AhlI ACTAGT 1 cut(s) 665
AjnI CCWGG 2 cut(s) 15, 991
AjuI GAANNNNNNNTTGG 4 cut(s) 191, 223, 1461, 1493
AluBI AGCT 6 cut(s) 230, 563, 740, 968, 1235, 1446
AluI AGCT 6 cut(s) 230, 563, 740, 968, 1235, 1446
Alw21I GWGCWC 1 cut(s) 1272
Alw26I GTCTC 4 cut(s) 36, 526, 721, 1325
Alw44I GTGCAC 1 cut(s) 1268
AoxI GGCC 3 cut(s) 51, 282, 954
ApaLI GTGCAC 1 cut(s) 1268
ApeKI GCWGC 3 cut(s) 170, 304, 1200
ApoI RAATTY 7 cut(s) 206, 362, 693, 748, 1120, 1369, 1469
AspLEI GCGC 3 cut(s) 393, 850, 1228
AspS9I GGNCC 1 cut(s) 1319
AsuC2I CCSGG 1 cut(s) 1026
AsuHPI GGTGA 1 cut(s) 796
AsuNHI GCTAGC 1 cut(s) 976
AvaII GGWCC 1 cut(s) 1319
BaeGI GKGCMC 1 cut(s) 1272
Bbv12I GWGCWC 1 cut(s) 1272
BbvI GCAGC 3 cut(s) 157, 316, 1187
BccI CCATC 4 cut(s) 581, 728, 1227, 1330
BceAI ACGGC 1 cut(s) 297
BciT130I CCWGG 2 cut(s) 17, 993
BciVI GTATCC 1 cut(s) 1050
BcnI CCSGG 1 cut(s) 1026
BcoDI GTCTC 4 cut(s) 36, 526, 721, 1325
BcuI ACTAGT 1 cut(s) 665
BfaI CTAG 5 cut(s) 372, 603, 666, 977, 1344
BfmI CTRYAG 1 cut(s) 171
BfuAI ACCTGC 1 cut(s) 997
BfuI GTATCC 1 cut(s) 1050
BglII AGATCT 4 cut(s) 86, 329, 674, 1288
BisI GCNGC 4 cut(s) 171, 305, 308, 1201
BlsI GCNGC 4 cut(s) 172, 306, 309, 1202
BmcAI AGTACT 1 cut(s) 1302
Bme1390I CCNGG 3 cut(s) 17, 993, 1026
Bme18I GGWCC 1 cut(s) 1319
BmgT120I GGNCC 1 cut(s) 1319
BmiI GGNNCC 1 cut(s) 1023
BmrFI CCNGG 3 cut(s) 17, 993, 1026
BmtI GCTAGC 1 cut(s) 980
BplI GAGNNNNNCTC 8 cut(s) 29, 61, 491, 523, 506, 538, 701, 733
BpmI CTGGAG 1 cut(s) 102
BpuEI CTTGAG 3 cut(s) 269, 1325, 1426
BpuMI CCSGG 1 cut(s) 1026
BsaHI GRCGYC 1 cut(s) 989
BsaI GGTCTC 1 cut(s) 721
BsaJI CCNNGG 2 cut(s) 1094, 1132
BsaWI WCCGGW 1 cut(s) 271
BsaXI ACNNNNNCTCC 4 cut(s) 729, 759, 900, 930
Bsc4I CCNNNNNNNGG 5 cut(s) 441, 933, 992, 1136, 1316
Bse1I ACTGG 1 cut(s) 1023
BseBI CCWGG 2 cut(s) 17, 993
BseDI CCNNGG 2 cut(s) 1094, 1132
BseGI GGATG 2 cut(s) 496, 1124
BseLI CCNNNNNNNGG 5 cut(s) 441, 933, 992, 1136, 1316
BseMII CTCAG 6 cut(s) 27, 60, 170, 732, 1320, 1352
BseNI ACTGG 1 cut(s) 1023
BseSI GKGCMC 1 cut(s) 1272
BseXI GCAGC 3 cut(s) 157, 316, 1187
BseYI CCCAGC 1 cut(s) 440
BsgI GTGCAG 1 cut(s) 1020
Bsh1285I CGRYCG 1 cut(s) 1100
BshFI GGCC 3 cut(s) 53, 284, 956
BsiEI CGRYCG 1 cut(s) 1100
BsiHKAI GWGCWC 1 cut(s) 1272
BsiSI CCGG 3 cut(s) 148, 272, 1026
BslI CCNNNNNNNGG 5 cut(s) 441, 933, 992, 1136, 1316
BsmAI GTCTC 4 cut(s) 36, 526, 721, 1325
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 3 cut(s) 53, 284, 956
Bso31I GGTCTC 1 cut(s) 721
Bsp1286I GDGCHC 1 cut(s) 1272
Bsp143I GATC 5 cut(s) 86, 329, 608, 674, 1288
BspACI CCGC 4 cut(s) 168, 307, 864, 1421
BspANI GGCC 3 cut(s) 53, 284, 956
BspCNI CTCAG 6 cut(s) 28, 59, 169, 731, 1321, 1351
BspLI GGNNCC 1 cut(s) 1023
BspMAI CTGCAG 1 cut(s) 175
BspMI ACCTGC 1 cut(s) 997
BspOI GCTAGC 1 cut(s) 980
BspTNI GGTCTC 1 cut(s) 721
BsrI ACTGG 1 cut(s) 1023
BssECI CCNNGG 2 cut(s) 1094, 1132
BssMI GATC 5 cut(s) 86, 329, 608, 674, 1288
BssNI GRCGYC 1 cut(s) 989
BssT1I CCWWGG 1 cut(s) 1132
Bst2UI CCWGG 2 cut(s) 17, 993
Bst4CI ACNGT 2 cut(s) 263, 820
Bst6I CTCTTC 2 cut(s) 248, 887
BstACI GRCGYC 1 cut(s) 989
BstC8I GCNNGC 1 cut(s) 978
BstDEI CTNAG 8 cut(s) 36, 46, 156, 456, 678, 718, 1329, 1338
BstF5I GGATG 2 cut(s) 496, 1124
BstHHI GCGC 3 cut(s) 393, 850, 1228
BstKTI GATC 5 cut(s) 89, 332, 611, 677, 1291
BstMAI GTCTC 4 cut(s) 36, 526, 721, 1325
BstMBI GATC 5 cut(s) 86, 329, 608, 674, 1288
BstMCI CGRYCG 1 cut(s) 1100
BstMWI GCNNNNNNNGC 3 cut(s) 982, 1232, 1241
BstNI CCWGG 2 cut(s) 17, 993
BstSCI CCNGG 3 cut(s) 15, 991, 1024
BstSFI CTRYAG 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 1272
BstV1I GCAGC 3 cut(s) 157, 316, 1187
BstX2I RGATCY 4 cut(s) 86, 329, 674, 1288
BstYI RGATCY 4 cut(s) 86, 329, 674, 1288
BsuI GTATCC 1 cut(s) 1050
BsuRI GGCC 3 cut(s) 53, 284, 956
BtsCI GGATG 2 cut(s) 496, 1124
BtsIMutI CAGTG 2 cut(s) 54, 589
BveI ACCTGC 1 cut(s) 997
Cac8I GCNNGC 1 cut(s) 978
CfoI GCGC 3 cut(s) 393, 850, 1228
Cfr13I GGNCC 1 cut(s) 1319
CseI GACGC 1 cut(s) 997
CsiI ACCWGGT 1 cut(s) 15
Csp6I GTAC 1 cut(s) 1301
CviAII CATG 1 cut(s) 1196
CviQI GTAC 1 cut(s) 1301
DdeI CTNAG 8 cut(s) 36, 46, 156, 456, 678, 718, 1329, 1338
DpnI GATC 5 cut(s) 88, 331, 610, 676, 1290
DpnII GATC 5 cut(s) 86, 329, 608, 674, 1288
DraI TTTAAA 2 cut(s) 367, 1485
DraIII CACNNNGTG 1 cut(s) 19
EaeI YGGCCR 1 cut(s) 282
Eam1104I CTCTTC 2 cut(s) 248, 887
EarI CTCTTC 2 cut(s) 248, 887
Eco130I CCWWGG 1 cut(s) 1132
Eco31I GGTCTC 1 cut(s) 721
Eco47I GGWCC 1 cut(s) 1319
EcoRI GAATTC 1 cut(s) 748
EcoRII CCWGG 2 cut(s) 15, 991
EcoT14I CCWWGG 1 cut(s) 1132
ErhI CCWWGG 1 cut(s) 1132
FaeI CATG 1 cut(s) 1199
FaiI YATR 6 cut(s) 549, 1071, 1073, 1197, 1352, 1428
FatI CATG 1 cut(s) 1195
FauI CCCGC 1 cut(s) 1414
FblI GTMKAC 2 cut(s) 241, 1159
Fnu4HI GCNGC 4 cut(s) 171, 305, 308, 1201
FokI GGATG 2 cut(s) 503, 1111
Fsp4HI GCNGC 4 cut(s) 171, 305, 308, 1201
FspBI CTAG 5 cut(s) 372, 603, 666, 977, 1344
FspI TGCGCA 1 cut(s) 1227
GlaI GCGC 3 cut(s) 392, 849, 1227
GluI GCNGC 4 cut(s) 171, 305, 308, 1201
GsaI CCCAGC 1 cut(s) 444
GsuI CTGGAG 1 cut(s) 102
HaeIII GGCC 3 cut(s) 53, 284, 956
HapII CCGG 3 cut(s) 148, 272, 1026
HgaI GACGC 1 cut(s) 997
HhaI GCGC 3 cut(s) 393, 850, 1228
Hin1I GRCGYC 1 cut(s) 989
Hin1II CATG 1 cut(s) 1199
Hin6I GCGC 3 cut(s) 391, 848, 1226
HinP1I GCGC 3 cut(s) 391, 848, 1226
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HindIII AAGCTT 2 cut(s) 228, 1444
HpaII CCGG 3 cut(s) 148, 272, 1026
HphI GGTGA 1 cut(s) 796
Hpy166II GTNNAC 5 cut(s) 242, 643, 936, 1160, 1270
Hpy188I TCNGA 8 cut(s) 159, 181, 212, 296, 597, 729, 1066, 1241
Hpy188III TCNNGA 8 cut(s) 119, 248, 266, 372, 447, 470, 555, 1000
Hpy8I GTNNAC 5 cut(s) 242, 643, 936, 1160, 1270
Hpy99I CGWCG 1 cut(s) 991
HpyAV CCTTC 7 cut(s) 207, 706, 824, 1365, 1403, 1485, 1492
HpyCH4III ACNGT 2 cut(s) 263, 820
HpyCH4V TGCA 6 cut(s) 173, 961, 1037, 1154, 1203, 1270
HpyF10VI GCNNNNNNNGC 3 cut(s) 982, 1232, 1241
HpyF3I CTNAG 8 cut(s) 36, 46, 156, 456, 678, 718, 1329, 1338
Hsp92I GRCGYC 1 cut(s) 989
Hsp92II CATG 1 cut(s) 1199
HspAI GCGC 3 cut(s) 391, 848, 1226
Kzo9I GATC 5 cut(s) 86, 329, 608, 674, 1288
LmnI GCTCC 3 cut(s) 274, 568, 737
Lsp1109I GCAGC 3 cut(s) 157, 316, 1187
MabI ACCWGGT 1 cut(s) 15
MaeI CTAG 5 cut(s) 372, 603, 666, 977, 1344
MaeIII GTNAC 1 cut(s) 257
MalI GATC 5 cut(s) 88, 331, 610, 676, 1290
MboI GATC 5 cut(s) 86, 329, 608, 674, 1288
MboII GAAGA 7 cut(s) 92, 96, 265, 430, 603, 904, 923
MflI RGATCY 4 cut(s) 86, 329, 674, 1288
MhlI GDGCHC 1 cut(s) 1272
MlyI GAGTC 4 cut(s) 38, 528, 592, 1187
MmeI TCCRAC 2 cut(s) 321, 1388
MseI TTAA 5 cut(s) 366, 1167, 1448, 1484, 1503
MspA1I CMGCKG 2 cut(s) 170, 307
MspI CCGG 3 cut(s) 148, 272, 1026
MspR9I CCNGG 3 cut(s) 17, 993, 1026
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 2 cut(s) 17, 993
MwoI GCNNNNNNNGC 3 cut(s) 982, 1232, 1241
NciI CCSGG 1 cut(s) 1026
NdeII GATC 5 cut(s) 86, 329, 608, 674, 1288
NheI GCTAGC 1 cut(s) 976
NlaIII CATG 1 cut(s) 1199
NlaIV GGNNCC 1 cut(s) 1023
NsbI TGCGCA 1 cut(s) 1227
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PctI GAATGC 1 cut(s) 13
PfeI GAWTC 9 cut(s) 176, 289, 400, 452, 466, 503, 539, 1389, 1454
PflMI CCANNNNNTGG 1 cut(s) 933
PfoI TCCNGGA 1 cut(s) 1024
PkrI GCNGC 4 cut(s) 172, 306, 309, 1202
PleI GAGTC 4 cut(s) 38, 527, 592, 1186
PpsI GAGTC 4 cut(s) 38, 527, 592, 1186
Psp6I CCWGG 2 cut(s) 15, 991
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 2 cut(s) 15, 991
PspN4I GGNNCC 1 cut(s) 1023
PspPI GGNCC 1 cut(s) 1319
PsrI GAACNNNNNNTAC 2 cut(s) 781, 813
PstI CTGCAG 1 cut(s) 175
PsuI RGATCY 4 cut(s) 86, 329, 674, 1288
RsaI GTAC 1 cut(s) 1302
RsaNI GTAC 1 cut(s) 1301
SaqAI TTAA 5 cut(s) 366, 1167, 1448, 1484, 1503
SatI GCNGC 4 cut(s) 171, 305, 308, 1201
Sau3AI GATC 5 cut(s) 86, 329, 608, 674, 1288
Sau96I GGNCC 1 cut(s) 1319
ScaI AGTACT 1 cut(s) 1302
SchI GAGTC 4 cut(s) 38, 528, 592, 1187
ScrFI CCNGG 3 cut(s) 17, 993, 1026
SduI GDGCHC 1 cut(s) 1272
SexAI ACCWGGT 1 cut(s) 15
SfcI CTRYAG 1 cut(s) 171
SinI GGWCC 1 cut(s) 1319
SmiI ATTTAAAT 1 cut(s) 367
SmlI CTYRAG 3 cut(s) 248, 1304, 1441
SmoI CTYRAG 3 cut(s) 248, 1304, 1441
SpeI ACTAGT 1 cut(s) 665
SsiI CCGC 4 cut(s) 168, 307, 864, 1421
SspMI CTAG 5 cut(s) 372, 603, 666, 977, 1344
StyD4I CCNGG 3 cut(s) 15, 991, 1024
StyI CCWWGG 1 cut(s) 1132
SwaI ATTTAAAT 1 cut(s) 367
TaaI ACNGT 2 cut(s) 263, 820
TaqI TCGA 5 cut(s) 407, 416, 446, 614, 1100
TaqII GACCGA 1 cut(s) 1086
TatI WGTACW 1 cut(s) 1300
TauI GCSGC 1 cut(s) 310
TfiI GAWTC 9 cut(s) 176, 289, 400, 452, 466, 503, 539, 1389, 1454
Tru1I TTAA 5 cut(s) 366, 1167, 1448, 1484, 1503
Tru9I TTAA 5 cut(s) 366, 1167, 1448, 1484, 1503
TscAI CASTG 2 cut(s) 54, 589
TseI GCWGC 3 cut(s) 170, 304, 1200
TspDTI ATGAA 2 cut(s) 1113, 1463
TspRI CASTG 2 cut(s) 54, 589
Van91I CCANNNNNTGG 1 cut(s) 933
VneI GTGCAC 1 cut(s) 1268
VpaK11BI GGWCC 1 cut(s) 1319
XapI RAATTY 7 cut(s) 206, 362, 693, 748, 1120, 1369, 1469
XbaI TCTAGA 1 cut(s) 371
XcmI CCANNNNNNNNNTGG 1 cut(s) 697
XmiI GTMKAC 2 cut(s) 241, 1159
XspI CTAG 5 cut(s) 372, 603, 666, 977, 1344
ZrmI AGTACT 1 cut(s) 1302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.