Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002733

Physical Location & Seq

Genomic Coordinates Forward (+)

20518266 .. 20520956

Gene Structure 2691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGGACCAATCAAAACGATAAAGAAGAAGAAGAGAGCAGAGAAGAAGGTTGATCGGAACGTATTGCTTGCTGCTACTGCTGCTGCTACTTCCGCATCCGCCGCCGCTGCTCTTAATAACAACGACGACGACGACGACTCATCATCTCAGTCTTTGGATTGGTGGGATGGATTCTCTCGCCGTATTTATGGAGGGTCAACGGATCCAAAGACATTTGAGTCAGTTTTCAAAATATCAAGGAAGACATTTGACTACATTTGCTCTCTTGTGAAAGCCGATTTCACAGCAAAGCCTGCAAATTTCAGCGACTCAAATGGGAACCCTTTATCTCTCAATGACCGTGTAGCTGTGGCGCTTAGGAGGCTTGGCTCTGGTGAATCTCTCTCTGTCATTGGAGAGACCTTTGGGATGAACCAGTCAACAGTCTCCCAAATCACTTGGCGCTTTGTTGAATCAATGGAAGAGAGAGCAATACACCATCTCTCATGGCCTTCGAAACTCGATGAAATAAAATCAAAGTTTGAGAAAATCTCAGGTCTTCCTAACTGCTGTGGCGCTATCGACATTACACATATTGTTATGAACCTTCCTGCTGTGGAACCGTCAAACAAAGTTTGGTTGGACGGAGAAAAGAACTTCAGCATGACTTTGCAGGCCGTAGTAGACCCGGACATGAGATTCCTCGATGTAATAGCTGGTTGGCCTGGGAGTTTAAATGATGATGTTGTCCTCAAGAACTCAGGATTCTACAAACTAGTTGAGAAAGGGAAGAGACTGAACGGGGAAAAGTTACCGCTCTCAGAAAGAACCGAGCTAAGAGAATACATAGTAGGTGATTCAGGTTTTCCTCTTCTTCCATGGCTTCTCACTCCATACCAAGGCAAACCCACGTCGCTTCCTCAAACCGAGTTCAACAAAAGACACTCCGAGGCAACAAAAGCCGCGCAGATGGCACTATCGAAGCTTAAAGACAGGTGGAGGATAATAAACGGGGTAATGTGGATGCCTGATAGAAACCGGTTACCAAGGATAATCTTTGTCTGTTGCTTGCTGCACAACATTATTATCGATATGGAGGATCAAACTTTGGATGACCAACCTTTGTCTCAGCAACATGACATGAACTACAGACAACGAAGCTGCAAGCTTGCCGATGAGGCTTCATCGGTCTTGAGAGATGAACTCTCTGACCAACTGTGTGGAAAAAATTCATCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

406

Amino Acids

45.47

Weight (kDa)

7.01

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_tran	PF04827	171 - 361	1.5e-12	Plant transposon protein
DDE_Tnp_4	PF13359	187 - 353	2.7e-28	DDE superfamily endonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55350
fragaria_vesca	FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_7g21532 FvH4_7g21532
malus_domestica	MD01G1122200.v1.1 MD03G1099600.v1.1 MD07G1191700.v1.1 MD11G1113800.v1.1
prunus_persica	Prupe.2G229800_v2.0.a1 Prupe.6G084600_v2.0.a1
pyrus_communis	pycom01g14910 pycom03g08200 pycom07g18110 pycom11g09580
rosa_chinensis	RchiOBHm_Chr1g0365861 RchiOBHm_Chr5g0062911
rosa_laevigata	RLG00000027385 RLG00000035589
rosa_multiflora	Rmu_co8388519.1_g000001 Rmu_sc0006406.1_g000002 Rmu_sc0010322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017720 Rroxscaffold_4G00290790 Rroxscaffold_5G00340940
rosa_rugosa	Rorug05G0352700
rosa_samantha	Rh1AG334100 Rh1BG294700 Rh1CG311400 Rh1DG327100 Rh5AG413700 Rh5BG427900 Rh5CG451500 Rh5DG441600
rosa_wichuraiana	Rw1G029640 Rw2G024510 Rw5G038870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	217
AccBSI	CCGCTC	1 cut(s)	796
AccI	GTMKAC	1 cut(s)	663
AccII	CGCG	1 cut(s)	944
AciI	CCGC	6 cut(s)	93, 99, 102, 105, 794, 942
AclWI	GGATC	3 cut(s)	197, 210, 1086
AcsI	RAATTY	2 cut(s)	298, 1207
AcuI	CTGAAG	1 cut(s)	622
AfiI	CCNNNNNNNGG	1 cut(s)	878
AgeI	ACCGGT	1 cut(s)	1017
AgsI	TTSAA	3 cut(s)	229, 452, 913
AhlI	ACTAGT	1 cut(s)	754
AjiI	CACGTC	1 cut(s)	891
AjnI	CCWGG	1 cut(s)	703
AluBI	AGCT	7 cut(s)	347, 695, 814, 964, 1140, 1147, 1217
AluI	AGCT	7 cut(s)	347, 695, 814, 964, 1140, 1147, 1217
Alw26I	GTCTC	4 cut(s)	392, 430, 766, 1110
AlwI	GGATC	3 cut(s)	197, 210, 1086
AoxI	GGCC	3 cut(s)	488, 654, 701
ApeKI	GCWGC	6 cut(s)	71, 80, 83, 107, 1051, 1140
ApoI	RAATTY	2 cut(s)	298, 1207
AsiGI	ACCGGT	1 cut(s)	1017
Asp700I	GAANNNNTTC	1 cut(s)	1207
AspLEI	GCGC	4 cut(s)	355, 444, 557, 946
AspS9I	GGNCC	1 cut(s)	5
AsuC2I	CCSGG	1 cut(s)	668
AsuHPI	GGTGA	2 cut(s)	386, 845
AsuII	TTCGAA	1 cut(s)	494
AvaII	GGWCC	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	202
BbsI	GAAGAC	2 cut(s)	248, 530
BbvI	GCAGC	6 cut(s)	58, 67, 70, 94, 1038, 1127
BccI	CCATC	3 cut(s)	161, 486, 943
BceAI	ACGGC	2 cut(s)	165, 641
BciT130I	CCWGG	1 cut(s)	705
BcnI	CCSGG	1 cut(s)	668
BcoDI	GTCTC	4 cut(s)	392, 430, 766, 1110
BcuI	ACTAGT	1 cut(s)	754
BfaI	CTAG	1 cut(s)	755
BfmI	CTRYAG	1 cut(s)	1126
BfoI	RGCGCY	3 cut(s)	356, 445, 558
BglI	GCCNNNNNGGC	1 cut(s)	1157
BisI	GCNGC	9 cut(s)	72, 81, 84, 102, 105, 108, 942, 1052, 1141
BlsI	GCNGC	9 cut(s)	73, 82, 85, 103, 106, 109, 943, 1053, 1142
Bme1390I	CCNGG	2 cut(s)	668, 705
Bme18I	GGWCC	1 cut(s)	5
BmgBI	CACGTC	1 cut(s)	891
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	4 cut(s)	6, 204, 320, 600
BmrFI	CCNGG	2 cut(s)	668, 705
BmsI	GCATC	2 cut(s)	104, 993
BpiI	GAAGAC	2 cut(s)	248, 530
BplI	GAGNNNNNCTC	4 cut(s)	515, 547, 1167, 1199
Bpu10I	CCTNAGC	1 cut(s)	356
Bpu14I	TTCGAA	1 cut(s)	494
BpuEI	CTTGAG	2 cut(s)	716, 1192
BpuMI	CCSGG	1 cut(s)	668
Bsa29I	ATCGAT	1 cut(s)	1068
BsaI	GGTCTC	1 cut(s)	392
BsaJI	CCNNGG	5 cut(s)	704, 857, 877, 927, 1025
BsaWI	WCCGGW	1 cut(s)	1017
Bsc4I	CCNNNNNNNGG	1 cut(s)	878
Bse118I	RCCGGY	1 cut(s)	1017
Bse1I	ACTGG	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	705
BseCI	ATCGAT	1 cut(s)	1068
BseDI	CCNNGG	5 cut(s)	704, 857, 877, 927, 1025
BseGI	GGATG	5 cut(s)	95, 172, 414, 1008, 1096
BseLI	CCNNNNNNNGG	1 cut(s)	878
BseMII	CTCAG	5 cut(s)	161, 546, 753, 813, 1121
BseNI	ACTGG	1 cut(s)	415
BseXI	GCAGC	6 cut(s)	58, 67, 70, 94, 1038, 1127
BsgI	GTGCAG	1 cut(s)	1037
Bsh1236I	CGCG	1 cut(s)	944
BshFI	GGCC	3 cut(s)	490, 656, 703
BshTI	ACCGGT	1 cut(s)	1017
BshVI	ATCGAT	1 cut(s)	1068
BsiSI	CCGG	2 cut(s)	668, 1018
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	878
BsmAI	GTCTC	4 cut(s)	392, 430, 766, 1110
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	3 cut(s)	490, 656, 703
Bso31I	GGTCTC	1 cut(s)	392
Bsp119I	TTCGAA	1 cut(s)	494
Bsp143I	GATC	3 cut(s)	52, 202, 1078
Bsp19I	CCATGG	1 cut(s)	857
BspACI	CCGC	6 cut(s)	93, 99, 102, 105, 794, 942
BspANI	GGCC	3 cut(s)	490, 656, 703
BspCNI	CTCAG	5 cut(s)	160, 545, 752, 812, 1120
BspDI	ATCGAT	1 cut(s)	1068
BspFNI	CGCG	1 cut(s)	944
BspLI	GGNNCC	4 cut(s)	6, 204, 320, 600
BspPI	GGATC	3 cut(s)	197, 210, 1086
BspT104I	TTCGAA	1 cut(s)	494
BspTNI	GGTCTC	1 cut(s)	392
BsrBI	CCGCTC	1 cut(s)	796
BsrFI	RCCGGY	1 cut(s)	1017
BsrI	ACTGG	1 cut(s)	415
BssAI	RCCGGY	1 cut(s)	1017
BssECI	CCNNGG	5 cut(s)	704, 857, 877, 927, 1025
BssMI	GATC	3 cut(s)	52, 202, 1078
BssT1I	CCWWGG	3 cut(s)	857, 877, 1025
Bst2UI	CCWGG	1 cut(s)	705
Bst4CI	ACNGT	4 cut(s)	341, 424, 603, 1197
Bst6I	CTCTTC	4 cut(s)	26, 456, 764, 855
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstBI	TTCGAA	1 cut(s)	494
BstC8I	GCNNGC	6 cut(s)	69, 294, 654, 1049, 1145, 1149
BstDEI	CTNAG	7 cut(s)	147, 356, 532, 739, 799, 815, 1107
BstDSI	CCRYGG	1 cut(s)	857
BstEII	GGTNACC	1 cut(s)	1020
BstF5I	GGATG	5 cut(s)	95, 172, 414, 1008, 1096
BstFNI	CGCG	1 cut(s)	944
BstH2I	RGCGCY	3 cut(s)	356, 445, 558
BstHHI	GCGC	4 cut(s)	355, 444, 557, 946
BstKTI	GATC	3 cut(s)	55, 205, 1081
BstMAI	GTCTC	4 cut(s)	392, 430, 766, 1110
BstMBI	GATC	3 cut(s)	52, 202, 1078
BstNI	CCWGG	1 cut(s)	705
BstPI	GGTNACC	1 cut(s)	1020
BstSCI	CCNGG	2 cut(s)	666, 703
BstSFI	CTRYAG	1 cut(s)	1126
BstUI	CGCG	1 cut(s)	944
BstV1I	GCAGC	6 cut(s)	58, 67, 70, 94, 1038, 1127
BstV2I	GAAGAC	2 cut(s)	248, 530
BstX2I	RGATCY	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	1199
BstYI	RGATCY	1 cut(s)	202
Bsu15I	ATCGAT	1 cut(s)	1068
BsuRI	GGCC	3 cut(s)	490, 656, 703
BsuTUI	ATCGAT	1 cut(s)	1068
BtgI	CCRYGG	1 cut(s)	857
BtrI	CACGTC	1 cut(s)	891
BtsCI	GGATG	5 cut(s)	95, 172, 414, 1008, 1096
Cac8I	GCNNGC	6 cut(s)	69, 294, 654, 1049, 1145, 1149
CfoI	GCGC	4 cut(s)	355, 444, 557, 946
Cfr10I	RCCGGY	1 cut(s)	1017
Cfr13I	GGNCC	1 cut(s)	5
ClaI	ATCGAT	1 cut(s)	1068
CspAI	ACCGGT	1 cut(s)	1017
CviAII	CATG	6 cut(s)	486, 643, 673, 858, 1115, 1120
DdeI	CTNAG	7 cut(s)	147, 356, 532, 739, 799, 815, 1107
DpnI	GATC	3 cut(s)	54, 204, 1080
DpnII	GATC	3 cut(s)	52, 202, 1078
DraI	TTTAAA	1 cut(s)	714
DrdI	GACNNNNNNGTC	1 cut(s)	217
DseDI	GACNNNNNNGTC	1 cut(s)	217
Eam1104I	CTCTTC	4 cut(s)	26, 456, 764, 855
EarI	CTCTTC	4 cut(s)	26, 456, 764, 855
EciI	GGCGGA	1 cut(s)	88
Eco130I	CCWWGG	3 cut(s)	857, 877, 1025
Eco31I	GGTCTC	1 cut(s)	392
Eco47I	GGWCC	1 cut(s)	5
Eco57I	CTGAAG	1 cut(s)	622
Eco91I	GGTNACC	1 cut(s)	1020
EcoO65I	GGTNACC	1 cut(s)	1020
EcoRII	CCWGG	1 cut(s)	703
EcoT14I	CCWWGG	3 cut(s)	857, 877, 1025
ErhI	CCWWGG	3 cut(s)	857, 877, 1025
FaeI	CATG	6 cut(s)	489, 646, 676, 861, 1118, 1123
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	6 cut(s)	485, 642, 672, 857, 1114, 1119
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	9 cut(s)	72, 81, 84, 102, 105, 108, 942, 1052, 1141
FokI	GGATG	5 cut(s)	82, 179, 421, 1015, 1103
Fsp4HI	GCNGC	9 cut(s)	72, 81, 84, 102, 105, 108, 942, 1052, 1141
FspBI	CTAG	1 cut(s)	755
GlaI	GCGC	4 cut(s)	354, 443, 556, 945
GluI	GCNGC	9 cut(s)	72, 81, 84, 102, 105, 108, 942, 1052, 1141
HaeII	RGCGCY	3 cut(s)	356, 445, 558
HaeIII	GGCC	3 cut(s)	490, 656, 703
HapII	CCGG	2 cut(s)	668, 1018
HhaI	GCGC	4 cut(s)	355, 444, 557, 946
Hin1II	CATG	6 cut(s)	489, 646, 676, 861, 1118, 1123
Hin6I	GCGC	4 cut(s)	353, 442, 555, 944
HinP1I	GCGC	4 cut(s)	353, 442, 555, 944
HincII	GTYRAC	2 cut(s)	198, 420
HindII	GTYRAC	2 cut(s)	198, 420
HindIII	AAGCTT	2 cut(s)	962, 1145
HinfI	GANTC	9 cut(s)	137, 171, 218, 308, 377, 452, 678, 744, 836
HpaII	CCGG	2 cut(s)	668, 1018
HphI	GGTGA	2 cut(s)	386, 845
Hpy166II	GTNNAC	3 cut(s)	198, 420, 664
Hpy188I	TCNGA	4 cut(s)	57, 802, 928, 1189
Hpy188III	TCNNGA	3 cut(s)	733, 741, 1171
Hpy8I	GTNNAC	3 cut(s)	198, 420, 664
Hpy99I	CGWCG	5 cut(s)	128, 131, 134, 137, 895
HpyAV	CCTTC	3 cut(s)	40, 501, 596
HpyCH4III	ACNGT	4 cut(s)	341, 424, 603, 1197
HpyCH4IV	ACGT	2 cut(s)	60, 890
HpyCH4V	TGCA	4 cut(s)	296, 652, 1054, 1143
HpyF3I	CTNAG	7 cut(s)	147, 356, 532, 739, 799, 815, 1107
HpySE526I	ACGT	2 cut(s)	60, 890
Hsp92II	CATG	6 cut(s)	489, 646, 676, 861, 1118, 1123
HspAI	GCGC	4 cut(s)	353, 442, 555, 944
Kzo9I	GATC	3 cut(s)	52, 202, 1078
Lsp1109I	GCAGC	6 cut(s)	58, 67, 70, 94, 1038, 1127
LweI	GCATC	2 cut(s)	104, 993
MaeI	CTAG	1 cut(s)	755
MaeII	ACGT	2 cut(s)	60, 890
MaeIII	GTNAC	2 cut(s)	789, 1020
MalI	GATC	3 cut(s)	54, 204, 1080
MbiI	CCGCTC	1 cut(s)	796
MboI	GATC	3 cut(s)	52, 202, 1078
MflI	RGATCY	1 cut(s)	202
MluCI	AATT	2 cut(s)	298, 1207
MlyI	GAGTC	3 cut(s)	131, 227, 302
MmeI	TCCRAC	1 cut(s)	600
MroXI	GAANNNNTTC	1 cut(s)	1207
MseI	TTAA	3 cut(s)	114, 713, 966
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	2 cut(s)	668, 1018
MspR9I	CCNGG	2 cut(s)	668, 705
MvaI	CCWGG	1 cut(s)	705
MvnI	CGCG	1 cut(s)	944
NciI	CCSGG	1 cut(s)	668
NcoI	CCATGG	1 cut(s)	857
NdeII	GATC	3 cut(s)	52, 202, 1078
NlaIII	CATG	6 cut(s)	489, 646, 676, 861, 1118, 1123
NlaIV	GGNNCC	4 cut(s)	6, 204, 320, 600
NspV	TTCGAA	1 cut(s)	494
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 132
PdmI	GAANNNNTTC	1 cut(s)	1207
PfeI	GAWTC	6 cut(s)	171, 377, 452, 678, 744, 836
PinAI	ACCGGT	1 cut(s)	1017
PkrI	GCNGC	9 cut(s)	73, 82, 85, 103, 106, 109, 943, 1053, 1142
PleI	GAGTC	3 cut(s)	131, 226, 302
PpsI	GAGTC	3 cut(s)	131, 226, 302
Psp6I	CCWGG	1 cut(s)	703
PspEI	GGTNACC	1 cut(s)	1020
PspGI	CCWGG	1 cut(s)	703
PspN4I	GGNNCC	4 cut(s)	6, 204, 320, 600
PspPI	GGNCC	1 cut(s)	5
PsuI	RGATCY	1 cut(s)	202
SaqAI	TTAA	3 cut(s)	114, 713, 966
SatI	GCNGC	9 cut(s)	72, 81, 84, 102, 105, 108, 942, 1052, 1141
Sau3AI	GATC	3 cut(s)	52, 202, 1078
Sau96I	GGNCC	1 cut(s)	5
SchI	GAGTC	3 cut(s)	131, 227, 302
ScrFI	CCNGG	2 cut(s)	668, 705
SfaNI	GCATC	2 cut(s)	104, 993
SfcI	CTRYAG	1 cut(s)	1126
SfuI	TTCGAA	1 cut(s)	494
SinI	GGWCC	1 cut(s)	5
SmlI	CTYRAG	2 cut(s)	731, 1171
SmoI	CTYRAG	2 cut(s)	731, 1171
SpeI	ACTAGT	1 cut(s)	754
Sse9I	AATT	2 cut(s)	298, 1207
SsiI	CCGC	6 cut(s)	93, 99, 102, 105, 794, 942
SspMI	CTAG	1 cut(s)	755
StyD4I	CCNGG	2 cut(s)	666, 703
StyI	CCWWGG	3 cut(s)	857, 877, 1025
TaaI	ACNGT	4 cut(s)	341, 424, 603, 1197
TaiI	ACGT	2 cut(s)	63, 893
TaqI	TCGA	6 cut(s)	494, 501, 561, 684, 959, 1068
TaqII	GACCGA	1 cut(s)	1156
TasI	AATT	2 cut(s)	298, 1207
TauI	GCSGC	3 cut(s)	104, 107, 944
TfiI	GAWTC	6 cut(s)	171, 377, 452, 678, 744, 836
Tru1I	TTAA	3 cut(s)	114, 713, 966
Tru9I	TTAA	3 cut(s)	114, 713, 966
TseI	GCWGC	6 cut(s)	71, 80, 83, 107, 1051, 1140
TspDTI	ATGAA	7 cut(s)	425, 519, 596, 1136, 1152, 1194, 1200
TspGWI	ACGGA	2 cut(s)	215, 639
VpaK11BI	GGWCC	1 cut(s)	5
XapI	RAATTY	2 cut(s)	298, 1207
XmiI	GTMKAC	1 cut(s)	663
XmnI	GAANNNNTTC	1 cut(s)	1207
XspI	CTAG	1 cut(s)	755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.