Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002733

Physical Location & Seq

Genomic Coordinates Forward (+)

25471503 .. 25472540

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G229800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGAAATTTGAATCTGTCTTCAAAGTTTCGAGAAAGACATTCAGTTACATCTGTTCACTTGTAAAGGAAGATATGATGACTAGCAGCTCAAACTTCAGTTATTCAAATGGAAAGCAGTTGTCTCTAAATGACCAAGTTGCTGTTGCTCTTAGGAGGCTTAGCTCTGGTGAGTCCTTAGTGAGCATCGGTGACTCATTTGGGATAAACCGATCAACCGTTTCTCACATTACCTGGAGGTTTGTGGAAGCAATGGAAGAAAGAGGGCTGCACCATCTTTGTTGGCCTACAAAGCATGGTGAAATGGAGGAGATAAAGTCCAAGTTTGAGAAAATCCGCGGCCTTCCAAATTGTTGTGGTGCAATTGACATCACACACATCCTGATGACCCACCCTACACCGGGCTCACCAGATGATGTCTGGCTCGATTGCGAAGAAAAATGCAGCATGATCTTACAGGCAATCGTTGACCCGGATATGAGGTTCCGTAACATTATTACAGGATGGCCAGGAAGTTTGAGTGATGAGCTAGTCCTTCGGAGTTCAGGTTTTTTCAAGCTGTGTGAAGAAAGAAGTTGTTTAAACGGGAAGAAGTTGGTGCTTTCAGAAGGAACAGAAGTAAGAGAATACATAGTTGGAGATTCTGGTTTTCCTCTCTTGCAATGGCTTTTCACTCCTTACAAGGGGAGAGAGCTCTCAAACTATCAGTGCGAGTTTAACAAGCGGCTCTCTGCGACGCAGATGGTGGCGCGCAGGGCGTTGGTGAGGCTGAAGGAGATGTGGAAGATAATTCAAGGGGTAATGTGGACGCCTGATAAGAACAAGTTGCCAAGGATTATTCTGGTTTGCTGTATTCTGCACAATATAGTTATTGATTTGGAGGATGAGGCGCAAGATGAAATGCCCTTGTCTCATCATCATGATTCTGGTTACCGGCAACAAACTTGCGAATCTGCTGACAATACTGCCTCTCTCCTGAGAGAGAAGCTTGCTATTTACTTGTCTGGAGAGAAGAACCTTGCTTCAGTCTTACCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

346

Amino Acids

39.19

Weight (kDa)

6.38

Isoelectric Point (pI)

41.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55350
fragaria_vesca	FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_7g21532 FvH4_7g21532
malus_domestica	MD01G1122200.v1.1 MD03G1099600.v1.1 MD07G1191700.v1.1 MD11G1113800.v1.1
prunus_persica	Prupe.2G229800_v2.0.a1 Prupe.6G084600_v2.0.a1
pyrus_communis	pycom01g14910 pycom03g08200 pycom07g18110 pycom11g09580
rosa_chinensis	RchiOBHm_Chr1g0365861 RchiOBHm_Chr5g0062911
rosa_laevigata	RLG00000027385 RLG00000035589
rosa_multiflora	Rmu_co8388519.1_g000001 Rmu_sc0006406.1_g000002 Rmu_sc0010322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017720 Rroxscaffold_4G00290790 Rroxscaffold_5G00340940
rosa_rugosa	Rorug05G0352700
rosa_samantha	Rh1AG334100 Rh1BG294700 Rh1CG311400 Rh1DG327100 Rh5AG413700 Rh5BG427900 Rh5CG451500 Rh5DG441600
rosa_wichuraiana	Rw1G029640 Rw2G024510 Rw5G038870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	336, 748
AciI	CCGC	3 cut(s)	334, 336, 721
AcoI	YGGCCR	1 cut(s)	503
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	3 cut(s)	79, 788, 1005
AcyI	GRCGYC	1 cut(s)	806
AfiI	CCNNNNNNNGG	3 cut(s)	397, 398, 680
AgsI	TTSAA	5 cut(s)	11, 22, 105, 553, 791
AjnI	CCWGG	3 cut(s)	230, 505, 1030
AjuI	GAANNNNNNNTTGG	2 cut(s)	615, 647
AloI	GAACNNNNNNTCC	2 cut(s)	464, 496
AluBI	AGCT	6 cut(s)	87, 162, 526, 556, 691, 985
AluI	AGCT	6 cut(s)	87, 162, 526, 556, 691, 985
Alw21I	GWGCWC	1 cut(s)	693
Alw26I	GTCTC	2 cut(s)	126, 912
AoxI	GGCC	3 cut(s)	281, 337, 503
ApeKI	GCWGC	3 cut(s)	84, 265, 441
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	3 cut(s)	748, 750, 889
AsuC2I	CCSGG	2 cut(s)	399, 470
AsuHPI	GGTGA	5 cut(s)	179, 200, 308, 396, 772
BalI	TGGCCA	1 cut(s)	505
BanII	GRGCYC	2 cut(s)	404, 693
BbsI	GAAGAC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	693
BbvI	GCAGC	3 cut(s)	96, 252, 453
BccI	CCATC	3 cut(s)	279, 495, 733
BciT130I	CCWGG	3 cut(s)	232, 507, 1032
BcnI	CCSGG	2 cut(s)	399, 470
BcoDI	GTCTC	2 cut(s)	126, 912
BfaI	CTAG	2 cut(s)	81, 527
BisI	GCNGC	5 cut(s)	85, 266, 337, 442, 722
BlpI	GCTNAGC	1 cut(s)	158
BlsI	GCNGC	5 cut(s)	86, 267, 338, 443, 723
Bme1390I	CCNGG	5 cut(s)	232, 399, 470, 507, 1032
BmiI	GGNNCC	1 cut(s)	482
BmrFI	CCNGG	5 cut(s)	232, 399, 470, 507, 1032
BmsI	GCATC	1 cut(s)	192
BpiI	GAAGAC	1 cut(s)	10
BpmI	CTGGAG	2 cut(s)	253, 1023
Bpu1102I	GCTNAGC	1 cut(s)	158
BpuMI	CCSGG	2 cut(s)	399, 470
BsaHI	GRCGYC	1 cut(s)	806
BsaJI	CCNNGG	2 cut(s)	334, 827
BsaXI	ACNNNNNCTCC	4 cut(s)	299, 329, 529, 559
Bsc4I	CCNNNNNNNGG	3 cut(s)	397, 398, 680
Bse118I	RCCGGY	1 cut(s)	930
Bse3DI	GCAATG	2 cut(s)	255, 665
BseBI	CCWGG	3 cut(s)	232, 507, 1032
BseDI	CCNNGG	2 cut(s)	334, 827
BseGI	GGATG	3 cut(s)	375, 506, 886
BseLI	CCNNNNNNNGG	3 cut(s)	397, 398, 680
BseMI	GCAATG	2 cut(s)	255, 665
BseMII	CTCAG	1 cut(s)	965
BsePI	GCGCGC	1 cut(s)	746
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	3 cut(s)	96, 252, 453
BsgI	GTGCAG	2 cut(s)	251, 839
Bsh1236I	CGCG	2 cut(s)	336, 748
BshFI	GGCC	3 cut(s)	283, 339, 505
BsiHKAI	GWGCWC	1 cut(s)	693
BsiSI	CCGG	3 cut(s)	398, 470, 931
BslI	CCNNNNNNNGG	3 cut(s)	397, 398, 680
BsmAI	GTCTC	2 cut(s)	126, 912
BsnI	GGCC	3 cut(s)	283, 339, 505
Bsp1286I	GDGCHC	2 cut(s)	404, 693
Bsp143I	GATC	2 cut(s)	209, 447
Bsp1720I	GCTNAGC	1 cut(s)	158
BspACI	CCGC	3 cut(s)	334, 336, 721
BspANI	GGCC	3 cut(s)	283, 339, 505
BspCNI	CTCAG	1 cut(s)	966
BspFNI	CGCG	2 cut(s)	336, 748
BspHI	TCATGA	1 cut(s)	916
BspLI	GGNNCC	1 cut(s)	482
BsrDI	GCAATG	2 cut(s)	255, 665
BsrFI	RCCGGY	1 cut(s)	930
BssAI	RCCGGY	1 cut(s)	930
BssECI	CCNNGG	2 cut(s)	334, 827
BssHII	GCGCGC	1 cut(s)	746
BssMI	GATC	2 cut(s)	209, 447
BssNI	GRCGYC	1 cut(s)	806
BssT1I	CCWWGG	1 cut(s)	827
Bst2UI	CCWGG	3 cut(s)	232, 507, 1032
Bst4CI	ACNGT	1 cut(s)	217
BstACI	GRCGYC	1 cut(s)	806
BstC8I	GCNNGC	2 cut(s)	748, 987
BstDEI	CTNAG	4 cut(s)	149, 158, 175, 974
BstDSI	CCRYGG	1 cut(s)	334
BstEII	GGTNACC	1 cut(s)	926
BstF5I	GGATG	3 cut(s)	375, 506, 886
BstFNI	CGCG	2 cut(s)	336, 748
BstHHI	GCGC	3 cut(s)	748, 750, 889
BstKTI	GATC	2 cut(s)	212, 450
BstMAI	GTCTC	2 cut(s)	126, 912
BstMBI	GATC	2 cut(s)	209, 447
BstMWI	GCNNNNNNNGC	2 cut(s)	289, 752
BstNI	CCWGG	3 cut(s)	232, 507, 1032
BstPI	GGTNACC	1 cut(s)	926
BstSCI	CCNGG	5 cut(s)	230, 397, 468, 505, 1030
BstUI	CGCG	2 cut(s)	336, 748
BstV1I	GCAGC	3 cut(s)	96, 252, 453
BstV2I	GAAGAC	1 cut(s)	10
BsuRI	GGCC	3 cut(s)	283, 339, 505
BtgI	CCRYGG	1 cut(s)	334
BtsCI	GGATG	3 cut(s)	375, 506, 886
BtsIMutI	CAGTG	1 cut(s)	710
Cac8I	GCNNGC	2 cut(s)	748, 987
CciI	TCATGA	1 cut(s)	916
CfoI	GCGC	3 cut(s)	748, 750, 889
Cfr10I	RCCGGY	1 cut(s)	930
Cfr42I	CCGCGG	1 cut(s)	337
CseI	GACGC	2 cut(s)	742, 814
CsiI	ACCWGGT	1 cut(s)	1030
CviAII	CATG	3 cut(s)	293, 445, 917
DdeI	CTNAG	4 cut(s)	149, 158, 175, 974
DpnI	GATC	2 cut(s)	211, 449
DpnII	GATC	2 cut(s)	209, 447
DraI	TTTAAA	1 cut(s)	579
EaeI	YGGCCR	1 cut(s)	503
Ecl136II	GAGCTC	1 cut(s)	691
Eco130I	CCWWGG	1 cut(s)	827
Eco24I	GRGCYC	2 cut(s)	404, 693
Eco53kI	GAGCTC	1 cut(s)	691
Eco57I	CTGAAG	3 cut(s)	79, 788, 1005
Eco91I	GGTNACC	1 cut(s)	926
EcoICRI	GAGCTC	1 cut(s)	691
EcoO65I	GGTNACC	1 cut(s)	926
EcoRII	CCWGG	3 cut(s)	230, 505, 1030
EcoT14I	CCWWGG	1 cut(s)	827
EcoT38I	GRGCYC	2 cut(s)	404, 693
ErhI	CCWWGG	1 cut(s)	827
FaeI	CATG	3 cut(s)	296, 448, 920
FaiI	YATR	7 cut(s)	74, 294, 446, 476, 629, 863, 918
FatI	CATG	3 cut(s)	292, 444, 916
Fnu4HI	GCNGC	5 cut(s)	85, 266, 337, 442, 722
FokI	GGATG	3 cut(s)	362, 513, 893
FriOI	GRGCYC	2 cut(s)	404, 693
Fsp4HI	GCNGC	5 cut(s)	85, 266, 337, 442, 722
FspBI	CTAG	2 cut(s)	81, 527
GlaI	GCGC	3 cut(s)	747, 749, 888
GluI	GCNGC	5 cut(s)	85, 266, 337, 442, 722
GsuI	CTGGAG	2 cut(s)	253, 1023
HaeIII	GGCC	3 cut(s)	283, 339, 505
HapII	CCGG	3 cut(s)	398, 470, 931
HgaI	GACGC	2 cut(s)	742, 814
HhaI	GCGC	3 cut(s)	748, 750, 889
Hin1I	GRCGYC	1 cut(s)	806
Hin1II	CATG	3 cut(s)	296, 448, 920
Hin6I	GCGC	3 cut(s)	746, 748, 887
HinP1I	GCGC	3 cut(s)	746, 748, 887
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HindIII	AAGCTT	1 cut(s)	983
HinfI	GANTC	6 cut(s)	11, 170, 191, 638, 920, 947
HpaII	CCGG	3 cut(s)	398, 470, 931
HphI	GGTGA	5 cut(s)	179, 200, 308, 396, 772
Hpy166II	GTNNAC	3 cut(s)	56, 466, 804
Hpy188I	TCNGA	2 cut(s)	537, 604
Hpy188III	TCNNGA	5 cut(s)	30, 379, 917, 973, 1002
Hpy8I	GTNNAC	3 cut(s)	56, 466, 804
Hpy99I	CGWCG	1 cut(s)	736
HpyAV	CCTTC	4 cut(s)	350, 542, 599, 763
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	5 cut(s)	268, 359, 441, 658, 856
HpyF10VI	GCNNNNNNNGC	2 cut(s)	289, 752
HpyF3I	CTNAG	4 cut(s)	149, 158, 175, 974
Hsp92I	GRCGYC	1 cut(s)	806
Hsp92II	CATG	3 cut(s)	296, 448, 920
HspAI	GCGC	3 cut(s)	746, 748, 887
KspI	CCGCGG	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	209, 447
Lsp1109I	GCAGC	3 cut(s)	96, 252, 453
LweI	GCATC	1 cut(s)	192
MabI	ACCWGGT	1 cut(s)	1030
MaeI	CTAG	2 cut(s)	81, 527
MaeIII	GTNAC	4 cut(s)	44, 188, 485, 926
MalI	GATC	2 cut(s)	211, 449
MboI	GATC	2 cut(s)	209, 447
MboII	GAAGA	8 cut(s)	10, 80, 266, 443, 575, 598, 793, 1021
MfeI	CAATTG	1 cut(s)	360
MhlI	GDGCHC	2 cut(s)	404, 693
MlsI	TGGCCA	1 cut(s)	505
MluCI	AATT	4 cut(s)	5, 346, 360, 786
MluNI	TGGCCA	1 cut(s)	505
MlyI	GAGTC	2 cut(s)	179, 185
MmeI	TCCRAC	1 cut(s)	613
Mox20I	TGGCCA	1 cut(s)	505
MscI	TGGCCA	1 cut(s)	505
MseI	TTAA	2 cut(s)	578, 714
MslI	CAYNNNNRTG	2 cut(s)	380, 915
Msp20I	TGGCCA	1 cut(s)	505
MspA1I	CMGCKG	1 cut(s)	336
MspI	CCGG	3 cut(s)	398, 470, 931
MspR9I	CCNGG	5 cut(s)	232, 399, 470, 507, 1032
MssI	GTTTAAAC	1 cut(s)	579
MunI	CAATTG	1 cut(s)	360
MvaI	CCWGG	3 cut(s)	232, 507, 1032
MvnI	CGCG	2 cut(s)	336, 748
MwoI	GCNNNNNNNGC	2 cut(s)	289, 752
NciI	CCSGG	2 cut(s)	399, 470
NdeII	GATC	2 cut(s)	209, 447
NlaIII	CATG	3 cut(s)	296, 448, 920
NlaIV	GGNNCC	1 cut(s)	482
NmuCI	GTSAC	1 cut(s)	188
PagI	TCATGA	1 cut(s)	916
PauI	GCGCGC	1 cut(s)	746
PfeI	GAWTC	4 cut(s)	11, 638, 920, 947
PkrI	GCNGC	5 cut(s)	86, 267, 338, 443, 723
PleI	GAGTC	2 cut(s)	178, 185
PmeI	GTTTAAAC	1 cut(s)	579
PpsI	GAGTC	2 cut(s)	178, 185
Psp124BI	GAGCTC	1 cut(s)	693
Psp6I	CCWGG	3 cut(s)	230, 505, 1030
PspEI	GGTNACC	1 cut(s)	926
PspGI	CCWGG	3 cut(s)	230, 505, 1030
PspN4I	GGNNCC	1 cut(s)	482
PteI	GCGCGC	1 cut(s)	746
RseI	CAYNNNNRTG	2 cut(s)	380, 915
SacI	GAGCTC	1 cut(s)	693
SacII	CCGCGG	1 cut(s)	337
SaqAI	TTAA	2 cut(s)	578, 714
SatI	GCNGC	5 cut(s)	85, 266, 337, 442, 722
Sau3AI	GATC	2 cut(s)	209, 447
SchI	GAGTC	2 cut(s)	179, 185
ScrFI	CCNGG	5 cut(s)	232, 399, 470, 507, 1032
SduI	GDGCHC	2 cut(s)	404, 693
SexAI	ACCWGGT	1 cut(s)	1030
SfaNI	GCATC	1 cut(s)	192
Sfr303I	CCGCGG	1 cut(s)	337
SgrBI	CCGCGG	1 cut(s)	337
SmiMI	CAYNNNNRTG	2 cut(s)	380, 915
Sse9I	AATT	4 cut(s)	5, 346, 360, 786
SsiI	CCGC	3 cut(s)	334, 336, 721
SspMI	CTAG	2 cut(s)	81, 527
SstI	GAGCTC	1 cut(s)	693
StyD4I	CCNGG	5 cut(s)	230, 397, 468, 505, 1030
StyI	CCWWGG	1 cut(s)	827
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	2 cut(s)	29, 423
TasI	AATT	4 cut(s)	5, 346, 360, 786
TauI	GCSGC	2 cut(s)	339, 724
TfiI	GAWTC	4 cut(s)	11, 638, 920, 947
Tru1I	TTAA	2 cut(s)	578, 714
Tru9I	TTAA	2 cut(s)	578, 714
TscAI	CASTG	1 cut(s)	710
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	3 cut(s)	84, 265, 441
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	2 cut(s)	17, 909
TspGWI	ACGGA	1 cut(s)	473
TspRI	CASTG	1 cut(s)	710
XapI	RAATTY	1 cut(s)	5
XcmI	CCANNNNNNNNNTGG	1 cut(s)	414
XspI	CTAG	2 cut(s)	81, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.