Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002733

Physical Location & Seq

Genomic Coordinates Reverse (-)

7821902 .. 7824881

Gene Structure 2980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g09580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGGTCCTGTGAGAGGGATTAGGAAGAGAAAGAAGGCTGAGAAGAAGGGTGAGGAGAATGCTTCTGGTTCTGGGTCATCAGAGAAGGAAGGTCCTGTGGATTGGTGGGATGAATTCTCCAGGAGAATTAATGGTGTGCAGTCTCCATCAAAGGTTTTAGACAAGTTTGAATCTGTTTTTAAGCTATCCAGGAAAACCTTCGACTACATCTGTTCACTTGTGAGTGAAGATATGATGGCAAAGTCGGCACATTTTGTGTTTACAAACGGTAAGCCCTTGTCTTTGCACGATCAAGTCGCTGTAGCCTTAAGAAGATTGAGCTCGGGTGAGTCACTAGTGACAATTGGCGATTCGTTTGGGGTGAACCACTCAACTGTGTCCCAAGTGACCTGGCGATTTGTCGAAGCCATGGAAGAAAGAGGACTTCACCACCTGCAATGGCCTTCCACTGAAGCAGAAATGACAGAAGTTAAATCCAAATTTCAGAAAATACGAGGCTTTCCCAATTGTTGCGGAGTTGTGGATACCACTCACATCATGATGTGTTTGCCTGCTTCAGACCCCACAAGTAACGCATGGCTCGATCAAGAGAAGAATCACAGCATGGTCTTGCAAGCCATTGTGGACCCTGACATGAGGTTTCGGGACATAGTTACCGGATGGCCAGGAAAAATGAAGGACTGGTCGGTGTTTCAGAGTTCGAATTTTTATCAACTCTGTGCTAGAGGTGAGAGATTGAATGGGAAAAGGTTAGAGCTCTCCACAGGATTGGATATCCGGGAATACATACTTGGGGACTTGGGGTTTTCTTTATTGCCCTATCTCGTGATCGATCGTAGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

282

Amino Acids

31.73

Weight (kDa)

7.67

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55350
fragaria_vesca	FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_7g21532 FvH4_7g21532
malus_domestica	MD01G1122200.v1.1 MD03G1099600.v1.1 MD07G1191700.v1.1 MD11G1113800.v1.1
prunus_persica	Prupe.2G229800_v2.0.a1 Prupe.6G084600_v2.0.a1
pyrus_communis	pycom01g14910 pycom03g08200 pycom07g18110 pycom11g09580
rosa_chinensis	RchiOBHm_Chr1g0365861 RchiOBHm_Chr5g0062911
rosa_laevigata	RLG00000027385 RLG00000035589
rosa_multiflora	Rmu_co8388519.1_g000001 Rmu_sc0006406.1_g000002 Rmu_sc0010322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017720 Rroxscaffold_4G00290790 Rroxscaffold_5G00340940
rosa_rugosa	Rorug05G0352700
rosa_samantha	Rh1AG334100 Rh1BG294700 Rh1CG311400 Rh1DG327100 Rh5AG413700 Rh5BG427900 Rh5CG451500 Rh5DG441600
rosa_wichuraiana	Rw1G029640 Rw2G024510 Rw5G038870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	441
Acc36I	ACCTGC	1 cut(s)	441
AciI	CCGC	1 cut(s)	513
AcoI	YGGCCR	1 cut(s)	662
AcsI	RAATTY	3 cut(s)	113, 479, 703
AcuI	CTGAAG	2 cut(s)	471, 540
AfiI	CCNNNNNNNGG	1 cut(s)	14
AflII	CTTAAG	1 cut(s)	307
AgsI	TTSAA	2 cut(s)	170, 739
AhlI	ACTAGT	1 cut(s)	334
AjnI	CCWGG	4 cut(s)	119, 188, 389, 664
AjuI	GAANNNNNNNTTGG	2 cut(s)	774, 806
AluBI	AGCT	3 cut(s)	184, 321, 757
AluI	AGCT	3 cut(s)	184, 321, 757
Alw21I	GWGCWC	2 cut(s)	323, 759
Alw26I	GTCTC	1 cut(s)	147
Ama87I	CYCGRG	1 cut(s)	322
AoxI	GGCC	2 cut(s)	440, 662
ApoI	RAATTY	3 cut(s)	113, 479, 703
AseI	ATTAAT	1 cut(s)	129
Asp700I	GAANNNNTTC	1 cut(s)	197
AspS9I	GGNCC	3 cut(s)	5, 92, 625
AsuC2I	CCSGG	1 cut(s)	779
AsuHPI	GGTGA	5 cut(s)	62, 338, 373, 419, 740
AsuII	TTCGAA	1 cut(s)	701
AvaI	CYCGRG	1 cut(s)	322
AvaII	GGWCC	3 cut(s)	5, 92, 625
BalI	TGGCCA	1 cut(s)	664
BanII	GRGCYC	2 cut(s)	323, 759
BauI	CACGAG	1 cut(s)	824
Bbv12I	GWGCWC	2 cut(s)	323, 759
BccI	CCATC	3 cut(s)	154, 229, 654
BciT130I	CCWGG	4 cut(s)	121, 190, 391, 666
BciVI	GTATCC	1 cut(s)	517
BcnI	CCSGG	1 cut(s)	779
BcoDI	GTCTC	1 cut(s)	147
BcuI	ACTAGT	1 cut(s)	334
BfaI	CTAG	2 cut(s)	335, 723
BfmI	CTRYAG	1 cut(s)	300
BfrI	CTTAAG	1 cut(s)	307
BfuAI	ACCTGC	1 cut(s)	441
BfuI	GTATCC	1 cut(s)	517
Bme1390I	CCNGG	5 cut(s)	121, 190, 391, 666, 779
Bme18I	GGWCC	3 cut(s)	5, 92, 625
BmeT110I	CYCGRG	1 cut(s)	322
BmgT120I	GGNCC	3 cut(s)	5, 92, 625
BmiI	GGNNCC	2 cut(s)	6, 627
BmrFI	CCNGG	5 cut(s)	121, 190, 391, 666, 779
BpmI	CTGGAG	1 cut(s)	103
Bpu14I	TTCGAA	1 cut(s)	701
BpuMI	CCSGG	1 cut(s)	779
Bsa29I	ATCGAT	1 cut(s)	831
BsaJI	CCNNGG	1 cut(s)	408
BsaWI	WCCGGW	1 cut(s)	656
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	686
Bse3DI	GCAATG	1 cut(s)	443
BseBI	CCWGG	4 cut(s)	121, 190, 391, 666
BseCI	ATCGAT	1 cut(s)	831
BseDI	CCNNGG	1 cut(s)	408
BseGI	GGATG	2 cut(s)	115, 665
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMI	GCAATG	1 cut(s)	443
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	686
BseRI	GAGGAG	1 cut(s)	68
BsgI	GTGCAG	1 cut(s)	158
Bsh1285I	CGRYCG	1 cut(s)	835
BshFI	GGCC	2 cut(s)	442, 664
BshVI	ATCGAT	1 cut(s)	831
BsiEI	CGRYCG	1 cut(s)	835
BsiHKAI	GWGCWC	2 cut(s)	323, 759
BsiHKCI	CYCGRG	1 cut(s)	322
BsiSI	CCGG	2 cut(s)	657, 778
BslFI	GGGAC	3 cut(s)	364, 659, 809
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	1 cut(s)	147
BsmFI	GGGAC	3 cut(s)	364, 659, 809
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	2 cut(s)	442, 664
BsoBI	CYCGRG	1 cut(s)	322
Bsp119I	TTCGAA	1 cut(s)	701
Bsp1286I	GDGCHC	2 cut(s)	323, 759
Bsp143I	GATC	4 cut(s)	289, 583, 828, 832
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	1 cut(s)	513
BspANI	GGCC	2 cut(s)	442, 664
BspCNI	CTCAG	1 cut(s)	31
BspDI	ATCGAT	1 cut(s)	831
BspHI	TCATGA	1 cut(s)	537
BspLI	GGNNCC	2 cut(s)	6, 627
BspMI	ACCTGC	1 cut(s)	441
BspT104I	TTCGAA	1 cut(s)	701
BspTI	CTTAAG	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	686
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	4 cut(s)	289, 583, 828, 832
BssSI	CACGAG	1 cut(s)	824
BssT1I	CCWWGG	1 cut(s)	408
Bst2BI	CACGAG	1 cut(s)	824
Bst2UI	CCWGG	4 cut(s)	121, 190, 391, 666
Bst4CI	ACNGT	2 cut(s)	269, 376
Bst6I	CTCTTC	1 cut(s)	20
BstAFI	CTTAAG	1 cut(s)	307
BstBI	TTCGAA	1 cut(s)	701
BstC8I	GCNNGC	2 cut(s)	552, 615
BstDEI	CTNAG	1 cut(s)	39
BstDSI	CCRYGG	1 cut(s)	408
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	115, 665
BstKTI	GATC	4 cut(s)	292, 586, 831, 835
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	4 cut(s)	289, 583, 828, 832
BstMCI	CGRYCG	1 cut(s)	835
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	4 cut(s)	121, 190, 391, 666
BstSCI	CCNGG	5 cut(s)	119, 188, 389, 664, 777
BstSFI	CTRYAG	1 cut(s)	300
BstXI	CCANNNNNNTGG	1 cut(s)	769
Bsu15I	ATCGAT	1 cut(s)	831
BsuI	GTATCC	1 cut(s)	517
BsuRI	GGCC	2 cut(s)	442, 664
BsuTUI	ATCGAT	1 cut(s)	831
BtgI	CCRYGG	1 cut(s)	408
BtsCI	GGATG	2 cut(s)	115, 665
BtsIMutI	CAGTG	1 cut(s)	447
BveI	ACCTGC	1 cut(s)	441
Cac8I	GCNNGC	2 cut(s)	552, 615
CciI	TCATGA	1 cut(s)	537
Cfr13I	GGNCC	3 cut(s)	5, 92, 625
ClaI	ATCGAT	1 cut(s)	831
CviAII	CATG	5 cut(s)	409, 538, 576, 604, 634
DdeI	CTNAG	1 cut(s)	39
DpnI	GATC	4 cut(s)	291, 585, 830, 834
DpnII	GATC	4 cut(s)	289, 583, 828, 832
EaeI	YGGCCR	1 cut(s)	662
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	321, 757
Eco130I	CCWWGG	1 cut(s)	408
Eco24I	GRGCYC	2 cut(s)	323, 759
Eco32I	GATATC	1 cut(s)	775
Eco47I	GGWCC	3 cut(s)	5, 92, 625
Eco53kI	GAGCTC	2 cut(s)	321, 757
Eco57I	CTGAAG	2 cut(s)	471, 540
Eco88I	CYCGRG	1 cut(s)	322
EcoICRI	GAGCTC	2 cut(s)	321, 757
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoO109I	RGGNCCY	2 cut(s)	5, 92
EcoRI	GAATTC	1 cut(s)	113
EcoRII	CCWGG	4 cut(s)	119, 188, 389, 664
EcoRV	GATATC	1 cut(s)	775
EcoT14I	CCWWGG	1 cut(s)	408
EcoT38I	GRGCYC	2 cut(s)	323, 759
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	5 cut(s)	412, 541, 579, 607, 637
FaiI	YATR	8 cut(s)	233, 410, 539, 577, 605, 635, 650, 788
FaqI	GGGAC	3 cut(s)	364, 659, 809
FatI	CATG	5 cut(s)	408, 537, 575, 603, 633
FokI	GGATG	2 cut(s)	122, 672
FriOI	GRGCYC	2 cut(s)	323, 759
FspBI	CTAG	2 cut(s)	335, 723
GsuI	CTGGAG	1 cut(s)	103
HaeIII	GGCC	2 cut(s)	442, 664
HapII	CCGG	2 cut(s)	657, 778
Hin1II	CATG	5 cut(s)	412, 541, 579, 607, 637
HinfI	GANTC	4 cut(s)	170, 329, 350, 595
HpaII	CCGG	2 cut(s)	657, 778
HphI	GGTGA	5 cut(s)	62, 338, 373, 419, 740
Hpy166II	GTNNAC	4 cut(s)	215, 261, 364, 625
Hpy188I	TCNGA	4 cut(s)	82, 486, 559, 696
Hpy188III	TCNNGA	4 cut(s)	538, 587, 644, 826
Hpy8I	GTNNAC	4 cut(s)	215, 261, 364, 625
HpyAV	CCTTC	7 cut(s)	28, 40, 79, 83, 208, 453, 670
HpyCH4III	ACNGT	2 cut(s)	269, 376
HpyCH4V	TGCA	4 cut(s)	139, 286, 436, 613
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpyF3I	CTNAG	1 cut(s)	39
Hsp92II	CATG	5 cut(s)	412, 541, 579, 607, 637
Kzo9I	GATC	4 cut(s)	289, 583, 828, 832
MaeI	CTAG	2 cut(s)	335, 723
MaeIII	GTNAC	5 cut(s)	330, 337, 385, 569, 652
MalI	GATC	4 cut(s)	291, 585, 830, 834
MboI	GATC	4 cut(s)	289, 583, 828, 832
MboII	GAAGA	6 cut(s)	37, 55, 239, 324, 425, 604
MfeI	CAATTG	2 cut(s)	342, 505
MhlI	GDGCHC	2 cut(s)	323, 759
MlsI	TGGCCA	1 cut(s)	664
MluCI	AATT	6 cut(s)	113, 126, 342, 479, 505, 703
MluNI	TGGCCA	1 cut(s)	664
MlyI	GAGTC	1 cut(s)	338
MnlI	CCTC	6 cut(s)	8, 46, 413, 488, 630, 719
Mox20I	TGGCCA	1 cut(s)	664
MroXI	GAANNNNTTC	1 cut(s)	197
MscI	TGGCCA	1 cut(s)	664
MseI	TTAA	4 cut(s)	129, 180, 308, 471
MslI	CAYNNNNRTG	1 cut(s)	539
Msp20I	TGGCCA	1 cut(s)	664
MspCI	CTTAAG	1 cut(s)	307
MspI	CCGG	2 cut(s)	657, 778
MspR9I	CCNGG	5 cut(s)	121, 190, 391, 666, 779
MunI	CAATTG	2 cut(s)	342, 505
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	4 cut(s)	121, 190, 391, 666
MwoI	GCNNNNNNNGC	1 cut(s)	245
NciI	CCSGG	1 cut(s)	779
NcoI	CCATGG	1 cut(s)	408
NdeII	GATC	4 cut(s)	289, 583, 828, 832
NlaIII	CATG	5 cut(s)	412, 541, 579, 607, 637
NlaIV	GGNNCC	2 cut(s)	6, 627
NmuCI	GTSAC	3 cut(s)	330, 337, 385
NspV	TTCGAA	1 cut(s)	701
PagI	TCATGA	1 cut(s)	537
PaqCI	CACCTGC	1 cut(s)	441
PcsI	WCGNNNNNNNCGW	1 cut(s)	579
PctI	GAATGC	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	3 cut(s)	170, 350, 595
PfoI	TCCNGGA	3 cut(s)	119, 188, 777
Ple19I	CGATCG	1 cut(s)	835
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
PpuMI	RGGWCCY	2 cut(s)	5, 92
PshBI	ATTAAT	1 cut(s)	129
Psp124BI	GAGCTC	2 cut(s)	323, 759
Psp5II	RGGWCCY	2 cut(s)	5, 92
Psp6I	CCWGG	4 cut(s)	119, 188, 389, 664
PspGI	CCWGG	4 cut(s)	119, 188, 389, 664
PspN4I	GGNNCC	2 cut(s)	6, 627
PspPI	GGNCC	3 cut(s)	5, 92, 625
PspPPI	RGGWCCY	2 cut(s)	5, 92
PvuI	CGATCG	1 cut(s)	835
RseI	CAYNNNNRTG	1 cut(s)	539
SacI	GAGCTC	2 cut(s)	323, 759
SaqAI	TTAA	4 cut(s)	129, 180, 308, 471
Sau3AI	GATC	4 cut(s)	289, 583, 828, 832
Sau96I	GGNCC	3 cut(s)	5, 92, 625
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	5 cut(s)	121, 190, 391, 666, 779
SduI	GDGCHC	2 cut(s)	323, 759
SfcI	CTRYAG	1 cut(s)	300
SfuI	TTCGAA	1 cut(s)	701
SinI	GGWCC	3 cut(s)	5, 92, 625
SmiMI	CAYNNNNRTG	1 cut(s)	539
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
SpeI	ACTAGT	1 cut(s)	334
Sse9I	AATT	6 cut(s)	113, 126, 342, 479, 505, 703
SsiI	CCGC	1 cut(s)	513
SspMI	CTAG	2 cut(s)	335, 723
SstI	GAGCTC	2 cut(s)	323, 759
StyD4I	CCNGG	5 cut(s)	119, 188, 389, 664, 777
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	2 cut(s)	269, 376
TaqI	TCGA	5 cut(s)	201, 402, 582, 701, 831
TasI	AATT	6 cut(s)	113, 126, 342, 479, 505, 703
TfiI	GAWTC	3 cut(s)	170, 350, 595
Tru1I	TTAA	4 cut(s)	129, 180, 308, 471
Tru9I	TTAA	4 cut(s)	129, 180, 308, 471
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	3 cut(s)	330, 337, 385
Tsp45I	GTSAC	3 cut(s)	330, 337, 385
TspDTI	ATGAA	2 cut(s)	126, 689
TspRI	CASTG	1 cut(s)	454
Vha464I	CTTAAG	1 cut(s)	307
VpaK11BI	GGWCC	3 cut(s)	5, 92, 625
VspI	ATTAAT	1 cut(s)	129
XagI	CCTNNNNNAGG	1 cut(s)	12
XapI	RAATTY	3 cut(s)	113, 479, 703
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	2 cut(s)	335, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.