Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002733

Physical Location & Seq

Genomic Coordinates Reverse (-)

10280071 .. 10284047

Gene Structure 3977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1113800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGGTCCTGTGAGAGGGATTAGGAAGAGAAAGAAGGCTGAGAAGAAGGGTGAGGAGAATGCTTCTGGTTCTGGGTCATCAGAGAAGGAAGGTCCTGTGGATTGGTGGGATGAATTCTCCAGAAGAATTAATGGTATGCAGTCTCCATCAAAGGTTTTAGACAAGTTTGAATCTGTTTTTAAGCTATCCAGGAAAACCTTCGAGTACATCTGTTCACTTGTGAGTGAAGATATGATGGCAAAGTCGGCACATTTTGTGTTTACAAATGGTAAGCCCTTGTCTTTGCATGATCAAGTCGCTGTAGCCTTAAGAAGATTGAGCTCGGGTGAGTCACTAGTGACAATTGGTGATTCGTTTGGGGTGAACCACTCAACTGTGTCTCAAGTGACCTGGCGATTTGTCGAAGCCATGGAAGAAAGAGGACTTCACCACCTGCAATGGCCTTCCACTGAAGCAGAAATGGCAGAAGTTAAATCCAAATTTCAGAAAATACGAGGCTTTCCCAATTGTTGCGGAGTTGTTGATACCACTCACATCATGATGTGTTTGCCTGCTTCTGACCCCACAAGTAACGCGTGGCTCGATCAAGAGAAGAATCACAGCATGGTCTTGCAAGCCATTGTGGACCCTGACATGAGGTTTCGGGACATAGTTACCGGATGGCCAGGAAAAATGAAGGACTGGTCGGTGTTTCAGAGTTCGAATTTTTATCAGCTCTGTGCTAGAGGTGAGAGATTGAATGGGAAAAGGTTAGAGCTCTCCACAGGATTGGATATCCGGGAATACATACTCGGGGACTTGGGGTTTTCTTTATTGCCCTATCTCGTGATCCCCTATGAAGGGAAAGAACTCCCAGAGCCGAAAGCTCAGTTCAATAAGTGGCATTATGCTACGCAGAAGGTAGCGCAGAGAGCATTGGCGAGGTTGAAGGATAGGTGGAGGATCATTCAGGGAGTGATGTGGAGACCTGACAAACATAGATTGCCGAGGATCATTCTCGTTTGCTGCTTGCTTCACAACATTGTTATAGATATGGAAGGCGGGGTTCAAGACGAGATGCCTCAGTCTCACAAACATGACTCAGAATACCGCCAACAGATTTGTGGAACTGTTGACATAAACGGCGTTCATCTGAGAGAAAAGCTGTCTCTCTACCTGTCTGGAAGAAGGATGCCAATGCCACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

396

Amino Acids

45.16

Weight (kDa)

8.89

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_tran	PF04827	154 - 348	5.6e-10	Plant transposon protein
DDE_Tnp_4	PF13359	174 - 340	1.6e-27	DDE superfamily endonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55350
fragaria_vesca	FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_7g21532 FvH4_7g21532
malus_domestica	MD01G1122200.v1.1 MD03G1099600.v1.1 MD07G1191700.v1.1 MD11G1113800.v1.1
prunus_persica	Prupe.2G229800_v2.0.a1 Prupe.6G084600_v2.0.a1
pyrus_communis	pycom01g14910 pycom03g08200 pycom07g18110 pycom11g09580
rosa_chinensis	RchiOBHm_Chr1g0365861 RchiOBHm_Chr5g0062911
rosa_laevigata	RLG00000027385 RLG00000035589
rosa_multiflora	Rmu_co8388519.1_g000001 Rmu_sc0006406.1_g000002 Rmu_sc0010322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017720 Rroxscaffold_4G00290790 Rroxscaffold_5G00340940
rosa_rugosa	Rorug05G0352700
rosa_samantha	Rh1AG334100 Rh1BG294700 Rh1CG311400 Rh1DG327100 Rh5AG413700 Rh5BG427900 Rh5CG451500 Rh5DG441600
rosa_wichuraiana	Rw1G029640 Rw2G024510 Rw5G038870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	441
Acc36I	ACCTGC	1 cut(s)	441
AccII	CGCG	1 cut(s)	575
AciI	CCGC	3 cut(s)	513, 1041, 1090
AclWI	GGATC	3 cut(s)	823, 950, 998
AcoI	YGGCCR	1 cut(s)	662
AcsI	RAATTY	3 cut(s)	113, 479, 703
AcuI	CTGAAG	1 cut(s)	471
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	3 cut(s)	14, 839, 840
AflII	CTTAAG	1 cut(s)	307
AflIII	ACRYGT	1 cut(s)	573
AgsI	TTSAA	5 cut(s)	170, 739, 874, 928, 1049
AhlI	ACTAGT	1 cut(s)	334
AjnI	CCWGG	3 cut(s)	188, 389, 664
AluBI	AGCT	6 cut(s)	184, 321, 715, 757, 866, 1144
AluI	AGCT	6 cut(s)	184, 321, 715, 757, 866, 1144
Alw21I	GWGCWC	2 cut(s)	323, 759
Alw26I	GTCTC	5 cut(s)	147, 384, 958, 1071, 1152
AlwI	GGATC	3 cut(s)	823, 950, 998
Ama87I	CYCGRG	2 cut(s)	322, 791
AoxI	GGCC	2 cut(s)	440, 662
ApeKI	GCWGC	1 cut(s)	1005
ApoI	RAATTY	3 cut(s)	113, 479, 703
AseI	ATTAAT	1 cut(s)	129
Asp700I	GAANNNNTTC	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	907
AspS9I	GGNCC	3 cut(s)	5, 92, 625
AsuC2I	CCSGG	1 cut(s)	779
AsuHPI	GGTGA	6 cut(s)	62, 338, 359, 373, 419, 740
AsuII	TTCGAA	1 cut(s)	701
AvaI	CYCGRG	2 cut(s)	322, 791
AvaII	GGWCC	3 cut(s)	5, 92, 625
BalI	TGGCCA	1 cut(s)	664
BanII	GRGCYC	2 cut(s)	323, 759
BauI	CACGAG	1 cut(s)	824
Bbv12I	GWGCWC	2 cut(s)	323, 759
BbvI	GCAGC	1 cut(s)	992
BccI	CCATC	3 cut(s)	154, 229, 654
BceAI	ACGGC	1 cut(s)	1138
BciT130I	CCWGG	3 cut(s)	190, 391, 666
BclI	TGATCA	1 cut(s)	289
BcnI	CCSGG	1 cut(s)	779
BcoDI	GTCTC	5 cut(s)	147, 384, 958, 1071, 1152
BcuI	ACTAGT	1 cut(s)	334
BfaI	CTAG	2 cut(s)	335, 723
BfmI	CTRYAG	1 cut(s)	300
BfrI	CTTAAG	1 cut(s)	307
BfuAI	ACCTGC	1 cut(s)	441
BisI	GCNGC	1 cut(s)	1006
BlsI	GCNGC	1 cut(s)	1007
Bme1390I	CCNGG	4 cut(s)	190, 391, 666, 779
Bme18I	GGWCC	3 cut(s)	5, 92, 625
BmeT110I	CYCGRG	2 cut(s)	322, 791
BmgT120I	GGNCC	3 cut(s)	5, 92, 625
BmiI	GGNNCC	2 cut(s)	6, 627
BmrFI	CCNGG	4 cut(s)	190, 391, 666, 779
BmsI	GCATC	2 cut(s)	1047, 1161
BpmI	CTGGAG	1 cut(s)	103
Bpu14I	TTCGAA	1 cut(s)	701
BpuEI	CTTGAG	1 cut(s)	366
BpuMI	CCSGG	1 cut(s)	779
BsaI	GGTCTC	1 cut(s)	958
BsaJI	CCNNGG	2 cut(s)	408, 986
BsaWI	WCCGGW	1 cut(s)	656
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 839, 840
Bse1I	ACTGG	1 cut(s)	686
Bse3DI	GCAATG	1 cut(s)	443
BseBI	CCWGG	3 cut(s)	190, 391, 666
BseDI	CCNNGG	2 cut(s)	408, 986
BseGI	GGATG	3 cut(s)	115, 665, 1176
BseLI	CCNNNNNNNGG	3 cut(s)	14, 839, 840
BseMI	GCAATG	1 cut(s)	443
BseMII	CTCAG	5 cut(s)	30, 881, 1076, 1095, 1124
BseNI	ACTGG	1 cut(s)	686
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	992
Bsh1236I	CGCG	1 cut(s)	575
BshFI	GGCC	2 cut(s)	442, 664
BsiHKAI	GWGCWC	2 cut(s)	323, 759
BsiHKCI	CYCGRG	2 cut(s)	322, 791
BsiSI	CCGG	2 cut(s)	657, 778
BslFI	GGGAC	2 cut(s)	659, 809
BslI	CCNNNNNNNGG	3 cut(s)	14, 839, 840
BsmAI	GTCTC	5 cut(s)	147, 384, 958, 1071, 1152
BsmFI	GGGAC	2 cut(s)	659, 809
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	2 cut(s)	442, 664
Bso31I	GGTCTC	1 cut(s)	958
BsoBI	CYCGRG	2 cut(s)	322, 791
Bsp119I	TTCGAA	1 cut(s)	701
Bsp1286I	GDGCHC	2 cut(s)	323, 759
Bsp143I	GATC	5 cut(s)	289, 583, 828, 942, 990
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	3 cut(s)	513, 1041, 1090
BspANI	GGCC	2 cut(s)	442, 664
BspCNI	CTCAG	5 cut(s)	31, 880, 1075, 1094, 1125
BspFNI	CGCG	1 cut(s)	575
BspHI	TCATGA	1 cut(s)	537
BspLI	GGNNCC	2 cut(s)	6, 627
BspMI	ACCTGC	1 cut(s)	441
BspPI	GGATC	3 cut(s)	823, 950, 998
BspT104I	TTCGAA	1 cut(s)	701
BspTI	CTTAAG	1 cut(s)	307
BspTNI	GGTCTC	1 cut(s)	958
BsrDI	GCAATG	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	686
BssECI	CCNNGG	2 cut(s)	408, 986
BssMI	GATC	5 cut(s)	289, 583, 828, 942, 990
BssSI	CACGAG	1 cut(s)	824
BssT1I	CCWWGG	1 cut(s)	408
Bst2BI	CACGAG	1 cut(s)	824
Bst2UI	CCWGG	3 cut(s)	190, 391, 666
Bst4CI	ACNGT	2 cut(s)	376, 1111
Bst6I	CTCTTC	1 cut(s)	20
BstAFI	CTTAAG	1 cut(s)	307
BstBI	TTCGAA	1 cut(s)	701
BstC8I	GCNNGC	3 cut(s)	552, 615, 1010
BstDEI	CTNAG	5 cut(s)	39, 867, 1062, 1081, 1133
BstDSI	CCRYGG	1 cut(s)	408
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstF5I	GGATG	3 cut(s)	115, 665, 1176
BstFNI	CGCG	1 cut(s)	575
BstHHI	GCGC	1 cut(s)	907
BstKTI	GATC	5 cut(s)	292, 586, 831, 945, 993
BstMAI	GTCTC	5 cut(s)	147, 384, 958, 1071, 1152
BstMBI	GATC	5 cut(s)	289, 583, 828, 942, 990
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 461, 911
BstNI	CCWGG	3 cut(s)	190, 391, 666
BstSCI	CCNGG	4 cut(s)	188, 389, 664, 777
BstSFI	CTRYAG	1 cut(s)	300
BstUI	CGCG	1 cut(s)	575
BstV1I	GCAGC	1 cut(s)	992
BstXI	CCANNNNNNTGG	1 cut(s)	769
BsuRI	GGCC	2 cut(s)	442, 664
BtgI	CCRYGG	1 cut(s)	408
BtsCI	GGATG	3 cut(s)	115, 665, 1176
BtsIMutI	CAGTG	1 cut(s)	447
BveI	ACCTGC	1 cut(s)	441
Cac8I	GCNNGC	3 cut(s)	552, 615, 1010
CciI	TCATGA	1 cut(s)	537
CfoI	GCGC	1 cut(s)	907
Cfr13I	GGNCC	3 cut(s)	5, 92, 625
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	6 cut(s)	287, 409, 538, 604, 634, 1076
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	5 cut(s)	39, 867, 1062, 1081, 1133
DpnI	GATC	5 cut(s)	291, 585, 830, 944, 992
DpnII	GATC	5 cut(s)	289, 583, 828, 942, 990
EaeI	YGGCCR	1 cut(s)	662
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	321, 757
Eco130I	CCWWGG	1 cut(s)	408
Eco24I	GRGCYC	2 cut(s)	323, 759
Eco31I	GGTCTC	1 cut(s)	958
Eco32I	GATATC	1 cut(s)	775
Eco47I	GGWCC	3 cut(s)	5, 92, 625
Eco53kI	GAGCTC	2 cut(s)	321, 757
Eco57I	CTGAAG	1 cut(s)	471
Eco88I	CYCGRG	2 cut(s)	322, 791
EcoICRI	GAGCTC	2 cut(s)	321, 757
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoO109I	RGGNCCY	2 cut(s)	5, 92
EcoRI	GAATTC	1 cut(s)	113
EcoRII	CCWGG	3 cut(s)	188, 389, 664
EcoRV	GATATC	1 cut(s)	775
EcoT14I	CCWWGG	1 cut(s)	408
EcoT38I	GRGCYC	2 cut(s)	323, 759
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	6 cut(s)	290, 412, 541, 607, 637, 1079
FaqI	GGGAC	2 cut(s)	659, 809
FatI	CATG	6 cut(s)	286, 408, 537, 603, 633, 1075
FauI	CCCGC	1 cut(s)	1034
FbaI	TGATCA	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	1006
FokI	GGATG	3 cut(s)	122, 672, 1183
FriOI	GRGCYC	2 cut(s)	323, 759
Fsp4HI	GCNGC	1 cut(s)	1006
FspBI	CTAG	2 cut(s)	335, 723
GlaI	GCGC	1 cut(s)	906
GluI	GCNGC	1 cut(s)	1006
GsuI	CTGGAG	1 cut(s)	103
HaeIII	GGCC	2 cut(s)	442, 664
HapII	CCGG	2 cut(s)	657, 778
HhaI	GCGC	1 cut(s)	907
Hin1II	CATG	6 cut(s)	290, 412, 541, 607, 637, 1079
Hin6I	GCGC	1 cut(s)	905
HinP1I	GCGC	1 cut(s)	905
HincII	GTYRAC	1 cut(s)	1114
HindII	GTYRAC	1 cut(s)	1114
HinfI	GANTC	5 cut(s)	170, 329, 350, 595, 1079
HpaII	CCGG	2 cut(s)	657, 778
HphI	GGTGA	6 cut(s)	62, 338, 359, 373, 419, 740
Hpy166II	GTNNAC	5 cut(s)	215, 261, 364, 625, 1114
Hpy188I	TCNGA	6 cut(s)	82, 486, 559, 696, 1084, 1134
Hpy188III	TCNNGA	7 cut(s)	120, 538, 587, 644, 826, 1049, 1161
Hpy8I	GTNNAC	5 cut(s)	215, 261, 364, 625, 1114
HpyCH4III	ACNGT	2 cut(s)	376, 1111
HpyCH4V	TGCA	4 cut(s)	139, 286, 436, 613
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 461, 911
HpyF3I	CTNAG	5 cut(s)	39, 867, 1062, 1081, 1133
Hsp92II	CATG	6 cut(s)	290, 412, 541, 607, 637, 1079
HspAI	GCGC	1 cut(s)	905
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	5 cut(s)	289, 583, 828, 942, 990
Lsp1109I	GCAGC	1 cut(s)	992
LweI	GCATC	2 cut(s)	1047, 1161
MaeI	CTAG	2 cut(s)	335, 723
MaeIII	GTNAC	5 cut(s)	330, 337, 385, 569, 652
MalI	GATC	5 cut(s)	291, 585, 830, 944, 992
MboI	GATC	5 cut(s)	289, 583, 828, 942, 990
MboII	GAAGA	8 cut(s)	37, 55, 135, 239, 324, 425, 604, 1176
MfeI	CAATTG	2 cut(s)	342, 505
MhlI	GDGCHC	2 cut(s)	323, 759
MlsI	TGGCCA	1 cut(s)	664
MluCI	AATT	6 cut(s)	113, 126, 342, 479, 505, 703
MluI	ACGCGT	1 cut(s)	573
MluNI	TGGCCA	1 cut(s)	664
MlyI	GAGTC	2 cut(s)	338, 1073
Mox20I	TGGCCA	1 cut(s)	664
MroXI	GAANNNNTTC	1 cut(s)	197
MscI	TGGCCA	1 cut(s)	664
MseI	TTAA	4 cut(s)	129, 180, 308, 471
MslI	CAYNNNNRTG	2 cut(s)	539, 1074
Msp20I	TGGCCA	1 cut(s)	664
MspCI	CTTAAG	1 cut(s)	307
MspI	CCGG	2 cut(s)	657, 778
MspR9I	CCNGG	4 cut(s)	190, 391, 666, 779
MunI	CAATTG	2 cut(s)	342, 505
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	3 cut(s)	190, 391, 666
MvnI	CGCG	1 cut(s)	575
MwoI	GCNNNNNNNGC	3 cut(s)	245, 461, 911
NciI	CCSGG	1 cut(s)	779
NcoI	CCATGG	1 cut(s)	408
NdeII	GATC	5 cut(s)	289, 583, 828, 942, 990
NlaIII	CATG	6 cut(s)	290, 412, 541, 607, 637, 1079
NlaIV	GGNNCC	2 cut(s)	6, 627
NmeAIII	GCCGAG	1 cut(s)	1011
NmuCI	GTSAC	3 cut(s)	330, 337, 385
NspV	TTCGAA	1 cut(s)	701
PagI	TCATGA	1 cut(s)	537
PaqCI	CACCTGC	1 cut(s)	441
PcsI	WCGNNNNNNNCGW	1 cut(s)	579
PctI	GAATGC	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	3 cut(s)	170, 350, 595
PfoI	TCCNGGA	2 cut(s)	188, 777
PkrI	GCNGC	1 cut(s)	1007
PleI	GAGTC	2 cut(s)	337, 1073
PpsI	GAGTC	2 cut(s)	337, 1073
PpuMI	RGGWCCY	2 cut(s)	5, 92
PshBI	ATTAAT	1 cut(s)	129
Psp124BI	GAGCTC	2 cut(s)	323, 759
Psp5II	RGGWCCY	2 cut(s)	5, 92
Psp6I	CCWGG	3 cut(s)	188, 389, 664
PspGI	CCWGG	3 cut(s)	188, 389, 664
PspN4I	GGNNCC	2 cut(s)	6, 627
PspPI	GGNCC	3 cut(s)	5, 92, 625
PspPPI	RGGWCCY	2 cut(s)	5, 92
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	2 cut(s)	539, 1074
SacI	GAGCTC	2 cut(s)	323, 759
SaqAI	TTAA	4 cut(s)	129, 180, 308, 471
SatI	GCNGC	1 cut(s)	1006
Sau3AI	GATC	5 cut(s)	289, 583, 828, 942, 990
Sau96I	GGNCC	3 cut(s)	5, 92, 625
SchI	GAGTC	2 cut(s)	338, 1073
ScrFI	CCNGG	4 cut(s)	190, 391, 666, 779
SduI	GDGCHC	2 cut(s)	323, 759
SfaNI	GCATC	2 cut(s)	1047, 1161
SfcI	CTRYAG	1 cut(s)	300
SfuI	TTCGAA	1 cut(s)	701
SinI	GGWCC	3 cut(s)	5, 92, 625
SmiMI	CAYNNNNRTG	2 cut(s)	539, 1074
SmlI	CTYRAG	2 cut(s)	307, 381
SmoI	CTYRAG	2 cut(s)	307, 381
SpeI	ACTAGT	1 cut(s)	334
Sse9I	AATT	6 cut(s)	113, 126, 342, 479, 505, 703
SsiI	CCGC	3 cut(s)	513, 1041, 1090
SspMI	CTAG	2 cut(s)	335, 723
SstI	GAGCTC	2 cut(s)	323, 759
StyD4I	CCNGG	4 cut(s)	188, 389, 664, 777
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	2 cut(s)	376, 1111
TaqI	TCGA	4 cut(s)	201, 402, 582, 701
TasI	AATT	6 cut(s)	113, 126, 342, 479, 505, 703
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	3 cut(s)	170, 350, 595
Tru1I	TTAA	4 cut(s)	129, 180, 308, 471
Tru9I	TTAA	4 cut(s)	129, 180, 308, 471
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	3 cut(s)	330, 337, 385
TseI	GCWGC	1 cut(s)	1005
Tsp45I	GTSAC	3 cut(s)	330, 337, 385
TspDTI	ATGAA	4 cut(s)	126, 689, 852, 1118
TspRI	CASTG	1 cut(s)	454
Vha464I	CTTAAG	1 cut(s)	307
VpaK11BI	GGWCC	3 cut(s)	5, 92, 625
VspI	ATTAAT	1 cut(s)	129
XagI	CCTNNNNNAGG	1 cut(s)	12
XapI	RAATTY	3 cut(s)	113, 479, 703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1100
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	2 cut(s)	335, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.