Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002733

Physical Location & Seq

Genomic Coordinates Reverse (-)

9420030 .. 9420918

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00340940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGAAGAGGAAGAAGACTGAGCCAAAGAAGCTTGACCGTTTGCTTGCAGCTGCTGCTCCACTGAGTCCTCAGCACGAGCCACTGGATTGGTGGGATCGGACGACTTCCAACAGATCTACTAGGCCTTTATCTGGATCAGAATCCAGAAATGCAGTGAAATTTGAATCTGTCTTCAAAATTTCAAGAAGGACATTCAAATGCAAGACCTGGATTCTGGTTTCATTTGTCATCTTCAATAGTTCCAGCTTTTGGTGCCATGACTTGCAACTCGAAACTAGTTACAGAAACCTGTCTATATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

100

Amino Acids

11.77

Weight (kDa)

10.09

Isoelectric Point (pI)

55.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55350
fragaria_vesca	FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_7g21532 FvH4_7g21532
malus_domestica	MD01G1122200.v1.1 MD03G1099600.v1.1 MD07G1191700.v1.1 MD11G1113800.v1.1
prunus_persica	Prupe.2G229800_v2.0.a1 Prupe.6G084600_v2.0.a1
pyrus_communis	pycom01g14910 pycom03g08200 pycom07g18110 pycom11g09580
rosa_chinensis	RchiOBHm_Chr1g0365861 RchiOBHm_Chr5g0062911
rosa_laevigata	RLG00000027385 RLG00000035589
rosa_multiflora	Rmu_co8388519.1_g000001 Rmu_sc0006406.1_g000002 Rmu_sc0010322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017720 Rroxscaffold_4G00290790 Rroxscaffold_5G00340940
rosa_rugosa	Rorug05G0352700
rosa_samantha	Rh1AG334100 Rh1BG294700 Rh1CG311400 Rh1DG327100 Rh5AG413700 Rh5BG427900 Rh5CG451500 Rh5DG441600
rosa_wichuraiana	Rw1G029640 Rw2G024510 Rw5G038870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	252
AccB7I	CCANNNNNTGG	1 cut(s)	249
AclWI	GGATC	2 cut(s)	102, 142
AcsI	RAATTY	2 cut(s)	158, 177
AfiI	CCNNNNNNNGG	2 cut(s)	131, 249
AgsI	TTSAA	5 cut(s)	164, 175, 183, 196, 235
AhlI	ACTAGT	1 cut(s)	275
AjnI	CCWGG	1 cut(s)	206
AluBI	AGCT	3 cut(s)	31, 50, 246
AluI	AGCT	3 cut(s)	31, 50, 246
AlwI	GGATC	2 cut(s)	102, 142
AlwNI	CAGNNNCTG	1 cut(s)	53
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	3 cut(s)	47, 50, 53
ApoI	RAATTY	2 cut(s)	158, 177
BanI	GGYRCC	1 cut(s)	252
BauI	CACGAG	1 cut(s)	74
BbsI	GAAGAC	2 cut(s)	20, 163
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	37, 40, 59
BciT130I	CCWGG	1 cut(s)	208
BcuI	ACTAGT	1 cut(s)	275
BfaI	CTAG	2 cut(s)	120, 276
BglII	AGATCT	1 cut(s)	113
BisI	GCNGC	3 cut(s)	48, 51, 54
BlsI	GCNGC	3 cut(s)	49, 52, 55
Bme1390I	CCNGG	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	254
BmrFI	CCNGG	1 cut(s)	208
BpiI	GAAGAC	2 cut(s)	20, 163
Bpu10I	CCTNAGC	1 cut(s)	69
BsaBI	GATNNNNATC	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 249
Bse1I	ACTGG	1 cut(s)	87
Bse8I	GATNNNNATC	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	208
BseJI	GATNNNNATC	1 cut(s)	139
BseLI	CCNNNNNNNGG	2 cut(s)	131, 249
BseMII	CTCAG	3 cut(s)	9, 53, 83
BseNI	ACTGG	1 cut(s)	87
BseXI	GCAGC	3 cut(s)	37, 40, 59
BshFI	GGCC	1 cut(s)	124
BshNI	GGYRCC	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	131, 249
BsnI	GGCC	1 cut(s)	124
Bsp143I	GATC	3 cut(s)	94, 113, 134
BspANI	GGCC	1 cut(s)	124
BspCNI	CTCAG	3 cut(s)	10, 54, 82
BspLI	GGNNCC	1 cut(s)	254
BspPI	GGATC	2 cut(s)	102, 142
BspT107I	GGYRCC	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	87
BssMI	GATC	3 cut(s)	94, 113, 134
BssSI	CACGAG	1 cut(s)	74
Bst2BI	CACGAG	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	38
BstAPI	GCANNNNNTGC	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	3 cut(s)	18, 62, 69
BstKTI	GATC	3 cut(s)	97, 116, 137
BstMBI	GATC	3 cut(s)	94, 113, 134
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 53, 252
BstNI	CCWGG	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	206
BstV1I	GCAGC	3 cut(s)	37, 40, 59
BstV2I	GAAGAC	2 cut(s)	20, 163
BstX2I	RGATCY	1 cut(s)	113
BstXI	CCANNNNNNTGG	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	124
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	3 cut(s)	59, 80, 159
Cac8I	GCNNGC	1 cut(s)	45
CaiI	CAGNNNCTG	1 cut(s)	53
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	6 cut(s)	22, 31, 50, 79, 124, 246
CviKI_1	RGCY	6 cut(s)	22, 31, 50, 79, 124, 246
DdeI	CTNAG	3 cut(s)	18, 62, 69
DpnI	GATC	3 cut(s)	96, 115, 136
DpnII	GATC	3 cut(s)	94, 113, 134
Eco147I	AGGCCT	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	206
FaeI	CATG	1 cut(s)	260
FaiI	YATR	3 cut(s)	258, 296, 298
FatI	CATG	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	48, 51, 54
Fsp4HI	GCNGC	3 cut(s)	48, 51, 54
FspBI	CTAG	2 cut(s)	120, 276
GluI	GCNGC	3 cut(s)	48, 51, 54
HaeIII	GGCC	1 cut(s)	124
Hin1II	CATG	1 cut(s)	260
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	4 cut(s)	64, 140, 164, 211
Hpy188I	TCNGA	2 cut(s)	99, 139
Hpy188III	TCNNGA	3 cut(s)	132, 144, 183
HpyAV	CCTTC	1 cut(s)	180
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4V	TGCA	4 cut(s)	47, 152, 201, 265
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 53, 252
HpyF3I	CTNAG	3 cut(s)	18, 62, 69
Hsp92II	CATG	1 cut(s)	260
Kzo9I	GATC	3 cut(s)	94, 113, 134
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	7 cut(s)	68, 117, 157, 193, 200, 220, 256
Lsp1109I	GCAGC	3 cut(s)	37, 40, 59
MaeI	CTAG	2 cut(s)	120, 276
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	3 cut(s)	96, 115, 136
MboI	GATC	3 cut(s)	94, 113, 134
MboII	GAAGA	5 cut(s)	16, 22, 25, 163, 223
MflI	RGATCY	1 cut(s)	113
MluCI	AATT	2 cut(s)	158, 177
MlyI	GAGTC	1 cut(s)	73
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	196
MspA1I	CMGCKG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	208
MvaI	CCWGG	1 cut(s)	208
MwoI	GCNNNNNNNGC	3 cut(s)	28, 53, 252
NdeII	GATC	3 cut(s)	94, 113, 134
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	1 cut(s)	254
PceI	AGGCCT	1 cut(s)	124
PfeI	GAWTC	3 cut(s)	140, 164, 211
PflMI	CCANNNNNTGG	1 cut(s)	249
PkrI	GCNGC	3 cut(s)	49, 52, 55
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	254
PstNI	CAGNNNCTG	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	113
PvuII	CAGCTG	1 cut(s)	50
RseI	CAYNNNNRTG	1 cut(s)	196
SatI	GCNGC	3 cut(s)	48, 51, 54
Sau3AI	GATC	3 cut(s)	94, 113, 134
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	1 cut(s)	208
SetI	ASST	5 cut(s)	33, 52, 209, 248, 291
SmiMI	CAYNNNNRTG	1 cut(s)	196
SpeI	ACTAGT	1 cut(s)	275
Sse9I	AATT	2 cut(s)	158, 177
SseBI	AGGCCT	1 cut(s)	124
SspMI	CTAG	2 cut(s)	120, 276
StuI	AGGCCT	1 cut(s)	124
StyD4I	CCNGG	1 cut(s)	206
TaaI	ACNGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	270
TasI	AATT	2 cut(s)	158, 177
TfiI	GAWTC	3 cut(s)	140, 164, 211
TscAI	CASTG	3 cut(s)	66, 87, 159
TseI	GCWGC	3 cut(s)	47, 50, 53
TspDTI	ATGAA	2 cut(s)	17, 210
TspRI	CASTG	3 cut(s)	66, 87, 159
Van91I	CCANNNNNTGG	1 cut(s)	249
XapI	RAATTY	2 cut(s)	158, 177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	87
XspI	CTAG	2 cut(s)	120, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.