Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002733

Physical Location & Seq

Genomic Coordinates Forward (+)

27153671 .. 27157774

Gene Structure 4104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1191700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGGACCCATCAGAGGGTCCAGGAAGAAGAAGAAGGTTGACCAGAATGTGGTAGCTGCTTCAGAATTCCAGCCCCTGGAATGTTGGTGGGACGGCTTCTCTCAGAGAATTACTGGTCAATCGAAATCTAAAGGTGTATTGAAATTTGAATCTTTCTTCAAATTTTCGGGAAAGACATTCAGCTACATCTGTTCACTTGTAAAGGAAGATATGATGGCCAGGTCCTCAACCTTCTGCTACTCGAATGGCAAGCCTGTGTGTCTAAATGACCAAGTTGCTATTGCTCTTAGGAGGCTTAGCTCCGGTGATTCATTATGCAGCATTGGCGAGTGCTTTGGGATGAACCAGTCAACTGTCTCGCACATAACCTGGCGTTTTGTGGAAGTAATGGAAGAAAGAGGGCTGCACCATCTTTCCTGGCCTAAAGAGCAGAGTGAAATAGAGGAGGTAAAGTCCAAGTTTGAGAAAATCCGCGGCCTTCCAAATTGTTGCGGCGCAATTGACATCACGCACATCATGATGACTCTGCCTACAACCGACTCATCAGATGATATCTGGCTCGATGGTGAGAAAAACTGCAGCATGATCTTGCAGGCAATCGTTGATCCAGACATGAGGTTTCGTAACATAATTACAGGATGGCCAGGAAGTATGAGCGATGACATTGTCCTCCGAAGCTCAGGTTTTTTCAAGATGTCTGAAGAAGGAGATTGTTTAAATGGGGAGAAGTTGGTGCTCTCAGAAGGAACAGAAGTGAGAGAATACATAGTAGGAGATTCGGGTTTTCCTCTCTTGCCATGGCTTCTCACTCCTTACAAGGGAAGAGGGCTGTGGGAGCATGAGTCTGAGTTCAACAAGCGGATTTCTGCAACACAGATGGTGGCGCAAAGGGCGTTGGTGAGGCTGAAAGAGATGTGCAAGATAATTCAAGGCGTAATGTGGAAGCCGGATAAGAACAAGCTGCCGAGGATTATTCTTGTTTGCTGTATACTGCATAATATAGTGATTGATATGGAGGATGAGGTGCAAGATGAAATGCCATCGTCCCGCCATCATGAACCTGGTTACCTGCAACAAATTTGTGAATCTGCTGCTGACGATACGGCATTTCACCTGAGAGAGAAGCTCTCTCTATACTTTGCTGGAAAATTGTCTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

387

Amino Acids

43.87

Weight (kDa)

6.19

Isoelectric Point (pI)

49.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_tran	PF04827	147 - 342	3.2e-11	Plant transposon protein
DDE_Tnp_4	PF13359	167 - 333	1.2e-26	DDE superfamily endonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55350
fragaria_vesca	FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_7g21532 FvH4_7g21532
malus_domestica	MD01G1122200.v1.1 MD03G1099600.v1.1 MD07G1191700.v1.1 MD11G1113800.v1.1
prunus_persica	Prupe.2G229800_v2.0.a1 Prupe.6G084600_v2.0.a1
pyrus_communis	pycom01g14910 pycom03g08200 pycom07g18110 pycom11g09580
rosa_chinensis	RchiOBHm_Chr1g0365861 RchiOBHm_Chr5g0062911
rosa_laevigata	RLG00000027385 RLG00000035589
rosa_multiflora	Rmu_co8388519.1_g000001 Rmu_sc0006406.1_g000002 Rmu_sc0010322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017720 Rroxscaffold_4G00290790 Rroxscaffold_5G00340940
rosa_rugosa	Rorug05G0352700
rosa_samantha	Rh1AG334100 Rh1BG294700 Rh1CG311400 Rh1DG327100 Rh5AG413700 Rh5BG427900 Rh5CG451500 Rh5DG441600
rosa_wichuraiana	Rw1G029640 Rw2G024510 Rw5G038870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1077
AccB7I	CCANNNNNTGG	2 cut(s)	49, 76
AccI	GTMKAC	1 cut(s)	988
AccII	CGCG	1 cut(s)	474
AciI	CCGC	5 cut(s)	472, 474, 492, 859, 1048
AclWI	GGATC	1 cut(s)	599
AcoI	YGGCCR	2 cut(s)	216, 641
AcsI	RAATTY	4 cut(s)	65, 143, 161, 1077
AcuI	CTGAAG	2 cut(s)	45, 720
AfiI	CCNNNNNNNGG	5 cut(s)	14, 15, 49, 76, 818
AgsI	TTSAA	6 cut(s)	142, 149, 160, 691, 853, 929
AjnI	CCWGG	7 cut(s)	20, 75, 218, 368, 416, 643, 1060
AluBI	AGCT	6 cut(s)	56, 183, 300, 678, 961, 1126
AluI	AGCT	6 cut(s)	56, 183, 300, 678, 961, 1126
Alw21I	GWGCWC	1 cut(s)	738
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	1 cut(s)	599
AlwNI	CAGNNNCTG	1 cut(s)	76
AoxI	GGCC	4 cut(s)	216, 419, 475, 641
ApeKI	GCWGC	6 cut(s)	56, 318, 403, 579, 961, 1091
ApoI	RAATTY	4 cut(s)	65, 143, 161, 1077
AspLEI	GCGC	2 cut(s)	497, 886
AspS9I	GGNCC	3 cut(s)	5, 18, 222
AsuHPI	GGTGA	4 cut(s)	317, 578, 910, 1103
AvaII	GGWCC	3 cut(s)	5, 18, 222
BalI	TGGCCA	2 cut(s)	218, 643
Bbv12I	GWGCWC	1 cut(s)	738
BbvI	GCAGC	6 cut(s)	43, 330, 390, 591, 948, 1078
BccI	CCATC	8 cut(s)	17, 208, 417, 557, 633, 871, 1048, 1059
BceAI	ACGGC	2 cut(s)	109, 1119
BciT130I	CCWGG	7 cut(s)	22, 77, 220, 370, 418, 645, 1062
BcoDI	GTCTC	1 cut(s)	361
BfmI	CTRYAG	1 cut(s)	577
BfuAI	ACCTGC	1 cut(s)	1077
BisI	GCNGC	8 cut(s)	57, 319, 404, 475, 493, 580, 962, 1092
BlpI	GCTNAGC	1 cut(s)	296
BlsI	GCNGC	8 cut(s)	58, 320, 405, 476, 494, 581, 963, 1093
Bme1390I	CCNGG	7 cut(s)	22, 77, 220, 370, 418, 645, 1062
Bme18I	GGWCC	3 cut(s)	5, 18, 222
BmgT120I	GGNCC	3 cut(s)	5, 18, 222
BmiI	GGNNCC	3 cut(s)	6, 7, 19
BmrFI	CCNGG	7 cut(s)	22, 77, 220, 370, 418, 645, 1062
BplI	GAGNNNNNCTC	4 cut(s)	1110, 1142, 1112, 1144
Bpu10I	CCTNAGC	1 cut(s)	679
Bpu1102I	GCTNAGC	1 cut(s)	296
BsaJI	CCNNGG	4 cut(s)	75, 472, 797, 965
BsaWI	WCCGGW	1 cut(s)	302
BsaXI	ACNNNNNCTCC	4 cut(s)	437, 467, 827, 857
Bsc4I	CCNNNNNNNGG	5 cut(s)	14, 15, 49, 76, 818
Bse1I	ACTGG	2 cut(s)	118, 346
BseBI	CCWGG	7 cut(s)	22, 77, 220, 370, 418, 645, 1062
BseDI	CCNNGG	4 cut(s)	75, 472, 797, 965
BseGI	GGATG	3 cut(s)	345, 644, 1024
BseLI	CCNNNNNNNGG	5 cut(s)	14, 15, 49, 76, 818
BseMII	CTCAG	5 cut(s)	116, 693, 753, 837, 1106
BseNI	ACTGG	2 cut(s)	118, 346
BseRI	GAGGAG	1 cut(s)	458
BseXI	GCAGC	6 cut(s)	43, 330, 390, 591, 948, 1078
BsgI	GTGCAG	1 cut(s)	389
Bsh1236I	CGCG	1 cut(s)	474
BshFI	GGCC	4 cut(s)	218, 421, 477, 643
BsiHKAI	GWGCWC	1 cut(s)	738
BsiSI	CCGG	2 cut(s)	303, 947
BslFI	GGGAC	3 cut(s)	18, 104, 1030
BslI	CCNNNNNNNGG	5 cut(s)	14, 15, 49, 76, 818
BsmAI	GTCTC	1 cut(s)	361
BsmFI	GGGAC	3 cut(s)	18, 104, 1030
BsnI	GGCC	4 cut(s)	218, 421, 477, 643
Bsp1286I	GDGCHC	1 cut(s)	738
Bsp143I	GATC	2 cut(s)	585, 604
Bsp1720I	GCTNAGC	1 cut(s)	296
Bsp19I	CCATGG	1 cut(s)	797
BspACI	CCGC	5 cut(s)	472, 474, 492, 859, 1048
BspANI	GGCC	4 cut(s)	218, 421, 477, 643
BspCNI	CTCAG	5 cut(s)	115, 692, 752, 838, 1107
BspFNI	CGCG	1 cut(s)	474
BspHI	TCATGA	2 cut(s)	516, 1054
BspLI	GGNNCC	3 cut(s)	6, 7, 19
BspMAI	CTGCAG	1 cut(s)	581
BspMI	ACCTGC	1 cut(s)	1077
BspPI	GGATC	1 cut(s)	599
BsrI	ACTGG	2 cut(s)	118, 346
BssECI	CCNNGG	4 cut(s)	75, 472, 797, 965
BssMI	GATC	2 cut(s)	585, 604
BssNAI	GTATAC	1 cut(s)	989
BssT1I	CCWWGG	1 cut(s)	797
Bst1107I	GTATAC	1 cut(s)	989
Bst2UI	CCWGG	7 cut(s)	22, 77, 220, 370, 418, 645, 1062
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	817
BstC8I	GCNNGC	2 cut(s)	251, 594
BstDEI	CTNAG	7 cut(s)	102, 287, 296, 679, 739, 846, 1115
BstDSI	CCRYGG	2 cut(s)	472, 797
BstEII	GGTNACC	1 cut(s)	1064
BstF5I	GGATG	3 cut(s)	345, 644, 1024
BstFNI	CGCG	1 cut(s)	474
BstHHI	GCGC	2 cut(s)	497, 886
BstKTI	GATC	2 cut(s)	588, 607
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	2 cut(s)	585, 604
BstMWI	GCNNNNNNNGC	4 cut(s)	324, 427, 835, 890
BstNI	CCWGG	7 cut(s)	22, 77, 220, 370, 418, 645, 1062
BstPI	GGTNACC	1 cut(s)	1064
BstSCI	CCNGG	7 cut(s)	20, 75, 218, 368, 416, 643, 1060
BstSFI	CTRYAG	1 cut(s)	577
BstUI	CGCG	1 cut(s)	474
BstV1I	GCAGC	6 cut(s)	43, 330, 390, 591, 948, 1078
BstZ17I	GTATAC	1 cut(s)	989
BsuRI	GGCC	4 cut(s)	218, 421, 477, 643
BtgI	CCRYGG	2 cut(s)	472, 797
BtgZI	GCGATG	1 cut(s)	672
BtsCI	GGATG	3 cut(s)	345, 644, 1024
BveI	ACCTGC	1 cut(s)	1077
Cac8I	GCNNGC	2 cut(s)	251, 594
CaiI	CAGNNNCTG	1 cut(s)	76
CciI	TCATGA	2 cut(s)	516, 1054
CfoI	GCGC	2 cut(s)	497, 886
Cfr13I	GGNCC	3 cut(s)	5, 18, 222
Cfr42I	CCGCGG	1 cut(s)	475
CsiI	ACCWGGT	1 cut(s)	1060
CviAII	CATG	6 cut(s)	517, 583, 613, 798, 839, 1055
DdeI	CTNAG	7 cut(s)	102, 287, 296, 679, 739, 846, 1115
DpnI	GATC	2 cut(s)	587, 606
DpnII	GATC	2 cut(s)	585, 604
DraI	TTTAAA	1 cut(s)	717
EaeI	YGGCCR	2 cut(s)	216, 641
Eam1104I	CTCTTC	1 cut(s)	817
EarI	CTCTTC	1 cut(s)	817
Eco130I	CCWWGG	1 cut(s)	797
Eco32I	GATATC	1 cut(s)	553
Eco47I	GGWCC	3 cut(s)	5, 18, 222
Eco57I	CTGAAG	2 cut(s)	45, 720
Eco91I	GGTNACC	1 cut(s)	1064
EcoO109I	RGGNCCY	2 cut(s)	5, 222
EcoO65I	GGTNACC	1 cut(s)	1064
EcoRI	GAATTC	1 cut(s)	65
EcoRII	CCWGG	7 cut(s)	20, 75, 218, 368, 416, 643, 1060
EcoRV	GATATC	1 cut(s)	553
EcoT14I	CCWWGG	1 cut(s)	797
ErhI	CCWWGG	1 cut(s)	797
FaeI	CATG	6 cut(s)	520, 586, 616, 801, 842, 1058
FaqI	GGGAC	3 cut(s)	18, 104, 1030
FatI	CATG	6 cut(s)	516, 582, 612, 797, 838, 1054
FauI	CCCGC	1 cut(s)	1055
FblI	GTMKAC	1 cut(s)	988
Fnu4HI	GCNGC	8 cut(s)	57, 319, 404, 475, 493, 580, 962, 1092
FokI	GGATG	3 cut(s)	352, 651, 1031
Fsp4HI	GCNGC	8 cut(s)	57, 319, 404, 475, 493, 580, 962, 1092
GlaI	GCGC	2 cut(s)	496, 885
GluI	GCNGC	8 cut(s)	57, 319, 404, 475, 493, 580, 962, 1092
HaeIII	GGCC	4 cut(s)	218, 421, 477, 643
HapII	CCGG	2 cut(s)	303, 947
HhaI	GCGC	2 cut(s)	497, 886
Hin1II	CATG	6 cut(s)	520, 586, 616, 801, 842, 1058
Hin6I	GCGC	2 cut(s)	495, 884
HinP1I	GCGC	2 cut(s)	495, 884
HincII	GTYRAC	2 cut(s)	40, 351
HindII	GTYRAC	2 cut(s)	40, 351
HinfI	GANTC	7 cut(s)	149, 308, 523, 539, 776, 842, 1085
HpaII	CCGG	2 cut(s)	303, 947
HphI	GGTGA	4 cut(s)	317, 578, 910, 1103
Hpy166II	GTNNAC	4 cut(s)	40, 194, 351, 989
Hpy188I	TCNGA	8 cut(s)	14, 64, 105, 547, 674, 700, 742, 847
Hpy188III	TCNNGA	6 cut(s)	168, 517, 608, 691, 1055, 1155
Hpy8I	GTNNAC	4 cut(s)	40, 194, 351, 989
HpyAV	CCTTC	5 cut(s)	28, 241, 488, 698, 737
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4V	TGCA	9 cut(s)	318, 406, 579, 592, 869, 918, 994, 1027, 1072
HpyF10VI	GCNNNNNNNGC	4 cut(s)	324, 427, 835, 890
HpyF3I	CTNAG	7 cut(s)	102, 287, 296, 679, 739, 846, 1115
Hsp92II	CATG	6 cut(s)	520, 586, 616, 801, 842, 1058
HspAI	GCGC	2 cut(s)	495, 884
KflI	GGGWCCC	1 cut(s)	5
KspI	CCGCGG	1 cut(s)	475
Kzo9I	GATC	2 cut(s)	585, 604
LmnI	GCTCC	2 cut(s)	305, 835
Lsp1109I	GCAGC	6 cut(s)	43, 330, 390, 591, 948, 1078
MabI	ACCWGGT	1 cut(s)	1060
MaeIII	GTNAC	2 cut(s)	623, 1064
MalI	GATC	2 cut(s)	587, 606
MboI	GATC	2 cut(s)	585, 604
MboII	GAAGA	8 cut(s)	37, 40, 43, 148, 218, 404, 713, 834
MfeI	CAATTG	1 cut(s)	498
MhlI	GDGCHC	1 cut(s)	738
MlsI	TGGCCA	2 cut(s)	218, 643
MluNI	TGGCCA	2 cut(s)	218, 643
MlyI	GAGTC	3 cut(s)	517, 533, 851
Mox20I	TGGCCA	2 cut(s)	218, 643
MscI	TGGCCA	2 cut(s)	218, 643
MseI	TTAA	1 cut(s)	716
MslI	CAYNNNNRTG	1 cut(s)	518
Msp20I	TGGCCA	2 cut(s)	218, 643
MspA1I	CMGCKG	1 cut(s)	474
MspI	CCGG	2 cut(s)	303, 947
MspR9I	CCNGG	7 cut(s)	22, 77, 220, 370, 418, 645, 1062
MunI	CAATTG	1 cut(s)	498
MvaI	CCWGG	7 cut(s)	22, 77, 220, 370, 418, 645, 1062
MvnI	CGCG	1 cut(s)	474
MwoI	GCNNNNNNNGC	4 cut(s)	324, 427, 835, 890
NcoI	CCATGG	1 cut(s)	797
NdeII	GATC	2 cut(s)	585, 604
NlaIII	CATG	6 cut(s)	520, 586, 616, 801, 842, 1058
NlaIV	GGNNCC	3 cut(s)	6, 7, 19
NmeAIII	GCCGAG	1 cut(s)	990
PagI	TCATGA	2 cut(s)	516, 1054
PfeI	GAWTC	4 cut(s)	149, 308, 776, 1085
PflFI	GACNNNGTC	1 cut(s)	665
PflMI	CCANNNNNTGG	2 cut(s)	49, 76
PfoI	TCCNGGA	1 cut(s)	20
PkrI	GCNGC	8 cut(s)	58, 320, 405, 476, 494, 581, 963, 1093
PleI	GAGTC	3 cut(s)	517, 533, 850
PpsI	GAGTC	3 cut(s)	517, 533, 850
PpuMI	RGGWCCY	2 cut(s)	5, 222
Psp5II	RGGWCCY	2 cut(s)	5, 222
Psp6I	CCWGG	7 cut(s)	20, 75, 218, 368, 416, 643, 1060
PspEI	GGTNACC	1 cut(s)	1064
PspGI	CCWGG	7 cut(s)	20, 75, 218, 368, 416, 643, 1060
PspN4I	GGNNCC	3 cut(s)	6, 7, 19
PspPI	GGNCC	3 cut(s)	5, 18, 222
PspPPI	RGGWCCY	2 cut(s)	5, 222
PstI	CTGCAG	1 cut(s)	581
PstNI	CAGNNNCTG	1 cut(s)	76
PsyI	GACNNNGTC	1 cut(s)	665
RseI	CAYNNNNRTG	1 cut(s)	518
SacII	CCGCGG	1 cut(s)	475
SaqAI	TTAA	1 cut(s)	716
SatI	GCNGC	8 cut(s)	57, 319, 404, 475, 493, 580, 962, 1092
Sau3AI	GATC	2 cut(s)	585, 604
Sau96I	GGNCC	3 cut(s)	5, 18, 222
SchI	GAGTC	3 cut(s)	517, 533, 851
ScrFI	CCNGG	7 cut(s)	22, 77, 220, 370, 418, 645, 1062
SduI	GDGCHC	1 cut(s)	738
SexAI	ACCWGGT	1 cut(s)	1060
SfcI	CTRYAG	1 cut(s)	577
Sfr303I	CCGCGG	1 cut(s)	475
SgrBI	CCGCGG	1 cut(s)	475
SinI	GGWCC	3 cut(s)	5, 18, 222
SmiMI	CAYNNNNRTG	1 cut(s)	518
SsiI	CCGC	5 cut(s)	472, 474, 492, 859, 1048
StyD4I	CCNGG	7 cut(s)	20, 75, 218, 368, 416, 643, 1060
StyI	CCWWGG	1 cut(s)	797
TaaI	ACNGT	1 cut(s)	355
TaqI	TCGA	4 cut(s)	122, 242, 561, 1156
TauI	GCSGC	2 cut(s)	477, 495
TfiI	GAWTC	4 cut(s)	149, 308, 776, 1085
Tru1I	TTAA	1 cut(s)	716
Tru9I	TTAA	1 cut(s)	716
TseI	GCWGC	6 cut(s)	56, 318, 403, 579, 961, 1091
TspDTI	ATGAA	4 cut(s)	300, 356, 1047, 1071
Tth111I	GACNNNGTC	1 cut(s)	665
Van91I	CCANNNNNTGG	2 cut(s)	49, 76
VpaK11BI	GGWCC	3 cut(s)	5, 18, 222
XapI	RAATTY	4 cut(s)	65, 143, 161, 1077
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1058
XmiI	GTMKAC	1 cut(s)	988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.