Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002733

Physical Location & Seq

Genomic Coordinates Forward (+)

14961830 .. 14964916

Gene Structure 3087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g14910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGGACCGATCAGAGGGTCCAGGAGGAAGAAGAAGGTTGACCAGAATGTGTTAGCTGCTTCAGACCCTCAGACCCTGGAATGTTGGTGGGATGGCTTCTCTCAGAGAATTACTGGTCAATCAAAATCTAAAGGAGCATTGATATTTGAATCTTTCTTCAAAATTTCGATAAAGACATTCGCCTACATCTGTTCGCTTGTAAAGGAAGATATGATGGCCAGGTCAACCTTCTGCTACTCAAATAACAAGCCATTATGTCTGAATGACCAAGTTGCTATCGCTCTTAGGAGGCTCAGCTCGGGTGATTCATTGTGCAGCATCGGTGAATGCTTTGGCATGAACCAATCCACTGTTTCGCACATAACCTGGCGGTTTGTGGAAGTAATGGAAGAAAAAGCTCTGCACCATCTGTCATGGCCTAAAGAGCAGGGTGAAATGGAGGAGATAAAGTCCAAGTTTGAGAAAATTCGCGGCCTTCCAAATTGCTGCGGTGCAATTGACATCACACACATCATGATGACTCTGCCTTCAGCGGACTCATCAGATGATGTCTGGCTCGATGGCGAGGAAAACTGCAGCATGATCTTGCAGGCAATTGTTGATCCAGACATGAGGTTCCGTAACATAATCACAGGATGGCCAGGAAGTCTGAGTGATGACATAGTCCTCAAAAGCTCAGGTTTTTTCAAGATGTCCGAAGAAGGAGATTGCTTAAATGGGGAGAAGTTGGTGCTTTCACAAGGAACAGAACTGAGAGAATACATAGTAGGAGATTCCGGCTTTCCTCTTTTGCCGTGGCTTCTCACTCCTTACAACGGAAGAGGCCGCCTCTGGGAGCATGAGTCTGATTTCAACAAGCGGATTTCTGCAACGCAGATGGTGGTGCAAAGGGCGTTGGTGAGGCTGAAAGAGATGTGGAAGATAATTCAGGGCGTAATGTGGAAGCCGGATAAGAACAAGCTGCCGAGGATTATTCTTGTTTGCTGTATACTGCACAATATAGTGATTGATATGGAGGATAAGGTGCAAGATGAAATGCCATCGTCTCGCCATCATGATCCCGGTTACCACCAACAAATTTGTGAATCTGCCGCTGACGATACGGCCTTTCAACTGAGAGAGAGTCTCTCTATATACTTAGCCGGAAGATTGTCTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

387

Amino Acids

43.83

Weight (kDa)

5.91

Isoelectric Point (pI)

45.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_tran	PF04827	145 - 341	9.7e-12	Plant transposon protein
DDE_Tnp_4	PF13359	166 - 333	3.6e-28	DDE superfamily endonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55350
fragaria_vesca	FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_7g21532 FvH4_7g21532
malus_domestica	MD01G1122200.v1.1 MD03G1099600.v1.1 MD07G1191700.v1.1 MD11G1113800.v1.1
prunus_persica	Prupe.2G229800_v2.0.a1 Prupe.6G084600_v2.0.a1
pyrus_communis	pycom01g14910 pycom03g08200 pycom07g18110 pycom11g09580
rosa_chinensis	RchiOBHm_Chr1g0365861 RchiOBHm_Chr5g0062911
rosa_laevigata	RLG00000027385 RLG00000035589
rosa_multiflora	Rmu_co8388519.1_g000001 Rmu_sc0006406.1_g000002 Rmu_sc0010322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017720 Rroxscaffold_4G00290790 Rroxscaffold_5G00340940
rosa_rugosa	Rorug05G0352700
rosa_samantha	Rh1AG334100 Rh1BG294700 Rh1CG311400 Rh1DG327100 Rh5AG413700 Rh5BG427900 Rh5CG451500 Rh5DG441600
rosa_wichuraiana	Rw1G029640 Rw2G024510 Rw5G038870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	988
AccII	CGCG	1 cut(s)	471
AciI	CCGC	7 cut(s)	370, 471, 489, 533, 826, 859, 1092
AclWI	GGATC	2 cut(s)	596, 1052
AcoI	YGGCCR	2 cut(s)	216, 638
AcsI	RAATTY	3 cut(s)	162, 465, 1077
AcuI	CTGAAG	2 cut(s)	45, 513
AfiI	CCNNNNNNNGG	3 cut(s)	14, 815, 832
AgsI	TTSAA	5 cut(s)	149, 160, 688, 853, 1112
AjnI	CCWGG	5 cut(s)	20, 75, 218, 365, 640
AluBI	AGCT	5 cut(s)	56, 297, 398, 675, 961
AluI	AGCT	5 cut(s)	56, 297, 398, 675, 961
Alw26I	GTCTC	2 cut(s)	1050, 1130
AlwI	GGATC	2 cut(s)	596, 1052
AlwNI	CAGNNNCTG	1 cut(s)	76
Ama87I	CYCGRG	1 cut(s)	298
AoxI	GGCC	6 cut(s)	216, 416, 472, 638, 823, 1104
ApeKI	GCWGC	5 cut(s)	56, 315, 486, 576, 961
ApoI	RAATTY	3 cut(s)	162, 465, 1077
AspS9I	GGNCC	2 cut(s)	5, 18
AsuC2I	CCSGG	1 cut(s)	1062
AsuHPI	GGTGA	4 cut(s)	314, 335, 443, 910
AvaI	CYCGRG	1 cut(s)	298
AvaII	GGWCC	2 cut(s)	5, 18
BalI	TGGCCA	2 cut(s)	218, 640
BbvI	GCAGC	5 cut(s)	43, 327, 473, 588, 948
BccI	CCATC	8 cut(s)	86, 208, 414, 554, 630, 871, 1048, 1059
BceAI	ACGGC	2 cut(s)	778, 1119
BciT130I	CCWGG	5 cut(s)	22, 77, 220, 367, 642
BcnI	CCSGG	1 cut(s)	1062
BcoDI	GTCTC	2 cut(s)	1050, 1130
BfmI	CTRYAG	1 cut(s)	574
BisI	GCNGC	8 cut(s)	57, 316, 472, 487, 577, 826, 962, 1092
BlpI	GCTNAGC	1 cut(s)	293
BlsI	GCNGC	8 cut(s)	58, 317, 473, 488, 578, 827, 963, 1093
Bme1390I	CCNGG	6 cut(s)	22, 77, 220, 367, 642, 1062
Bme18I	GGWCC	2 cut(s)	5, 18
BmeT110I	CYCGRG	1 cut(s)	298
BmgT120I	GGNCC	2 cut(s)	5, 18
BmiI	GGNNCC	3 cut(s)	6, 19, 617
BmrFI	CCNGG	6 cut(s)	22, 77, 220, 367, 642, 1062
BmsI	GCATC	1 cut(s)	327
BplI	GAGNNNNNCTC	6 cut(s)	813, 845, 1110, 1142, 1112, 1144
Bpu10I	CCTNAGC	1 cut(s)	676
Bpu1102I	GCTNAGC	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	1062
BsaJI	CCNNGG	3 cut(s)	75, 794, 965
BsaXI	ACNNNNNCTCC	4 cut(s)	434, 464, 827, 857
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 815, 832
Bse1I	ACTGG	1 cut(s)	118
BseBI	CCWGG	5 cut(s)	22, 77, 220, 367, 642
BseDI	CCNNGG	3 cut(s)	75, 794, 965
BseGI	GGATG	2 cut(s)	97, 641
BseLI	CCNNNNNNNGG	3 cut(s)	14, 815, 832
BseMII	CTCAG	7 cut(s)	83, 116, 307, 641, 690, 743, 1106
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	1 cut(s)	455
BseXI	GCAGC	5 cut(s)	43, 327, 473, 588, 948
BsgI	GTGCAG	3 cut(s)	334, 386, 977
Bsh1236I	CGCG	1 cut(s)	471
BshFI	GGCC	6 cut(s)	218, 418, 474, 640, 825, 1106
BsiHKCI	CYCGRG	1 cut(s)	298
BsiSI	CCGG	4 cut(s)	777, 947, 1062, 1143
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	3 cut(s)	14, 815, 832
BsmAI	GTCTC	2 cut(s)	1050, 1130
BsmBI	CGTCTC	1 cut(s)	1050
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	332
BsnI	GGCC	6 cut(s)	218, 418, 474, 640, 825, 1106
BsoBI	CYCGRG	1 cut(s)	298
Bsp143I	GATC	4 cut(s)	9, 582, 601, 1057
Bsp1720I	GCTNAGC	1 cut(s)	293
BspACI	CCGC	7 cut(s)	370, 471, 489, 533, 826, 859, 1092
BspANI	GGCC	6 cut(s)	218, 418, 474, 640, 825, 1106
BspCNI	CTCAG	7 cut(s)	82, 115, 306, 642, 689, 744, 1107
BspFNI	CGCG	1 cut(s)	471
BspHI	TCATGA	2 cut(s)	513, 1054
BspLI	GGNNCC	3 cut(s)	6, 19, 617
BspMAI	CTGCAG	1 cut(s)	578
BspPI	GGATC	2 cut(s)	596, 1052
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	3 cut(s)	75, 794, 965
BssMI	GATC	4 cut(s)	9, 582, 601, 1057
BssNAI	GTATAC	1 cut(s)	989
Bst1107I	GTATAC	1 cut(s)	989
Bst2UI	CCWGG	5 cut(s)	22, 77, 220, 367, 642
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	1 cut(s)	814
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	9 cut(s)	69, 102, 284, 293, 650, 676, 752, 1115, 1138
BstDSI	CCRYGG	1 cut(s)	794
BstEII	GGTNACC	1 cut(s)	1064
BstF5I	GGATG	2 cut(s)	97, 641
BstFNI	CGCG	1 cut(s)	471
BstKTI	GATC	4 cut(s)	12, 585, 604, 1060
BstMAI	GTCTC	2 cut(s)	1050, 1130
BstMBI	GATC	4 cut(s)	9, 582, 601, 1057
BstMWI	GCNNNNNNNGC	1 cut(s)	424
BstNI	CCWGG	5 cut(s)	22, 77, 220, 367, 642
BstPI	GGTNACC	1 cut(s)	1064
BstSCI	CCNGG	6 cut(s)	20, 75, 218, 365, 640, 1060
BstSFI	CTRYAG	1 cut(s)	574
BstUI	CGCG	1 cut(s)	471
BstV1I	GCAGC	5 cut(s)	43, 327, 473, 588, 948
BstZ17I	GTATAC	1 cut(s)	989
BsuRI	GGCC	6 cut(s)	218, 418, 474, 640, 825, 1106
BtgI	CCRYGG	1 cut(s)	794
BtsCI	GGATG	2 cut(s)	97, 641
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	591
CaiI	CAGNNNCTG	1 cut(s)	76
CciI	TCATGA	2 cut(s)	513, 1054
Cfr13I	GGNCC	2 cut(s)	5, 18
CviAII	CATG	7 cut(s)	337, 414, 514, 580, 610, 839, 1055
DdeI	CTNAG	9 cut(s)	69, 102, 284, 293, 650, 676, 752, 1115, 1138
DpnI	GATC	4 cut(s)	11, 584, 603, 1059
DpnII	GATC	4 cut(s)	9, 582, 601, 1057
EaeI	YGGCCR	2 cut(s)	216, 638
Eam1104I	CTCTTC	1 cut(s)	814
EarI	CTCTTC	1 cut(s)	814
Eco47I	GGWCC	2 cut(s)	5, 18
Eco57I	CTGAAG	2 cut(s)	45, 513
Eco88I	CYCGRG	1 cut(s)	298
Eco91I	GGTNACC	1 cut(s)	1064
EcoO65I	GGTNACC	1 cut(s)	1064
EcoRII	CCWGG	5 cut(s)	20, 75, 218, 365, 640
Esp3I	CGTCTC	1 cut(s)	1050
FaeI	CATG	7 cut(s)	340, 417, 517, 583, 613, 842, 1058
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	7 cut(s)	336, 413, 513, 579, 609, 838, 1054
FblI	GTMKAC	1 cut(s)	988
Fnu4HI	GCNGC	8 cut(s)	57, 316, 472, 487, 577, 826, 962, 1092
FokI	GGATG	2 cut(s)	104, 648
Fsp4HI	GCNGC	8 cut(s)	57, 316, 472, 487, 577, 826, 962, 1092
GluI	GCNGC	8 cut(s)	57, 316, 472, 487, 577, 826, 962, 1092
HaeIII	GGCC	6 cut(s)	218, 418, 474, 640, 825, 1106
HapII	CCGG	4 cut(s)	777, 947, 1062, 1143
Hin1II	CATG	7 cut(s)	340, 417, 517, 583, 613, 842, 1058
HincII	GTYRAC	2 cut(s)	40, 225
HindII	GTYRAC	2 cut(s)	40, 225
HinfI	GANTC	8 cut(s)	149, 305, 520, 536, 773, 842, 1085, 1123
HpaII	CCGG	4 cut(s)	777, 947, 1062, 1143
HphI	GGTGA	4 cut(s)	314, 335, 443, 910
Hpy166II	GTNNAC	3 cut(s)	40, 225, 989
Hpy188I	TCNGA	9 cut(s)	14, 64, 72, 105, 261, 544, 651, 697, 847
Hpy188III	TCNNGA	4 cut(s)	514, 605, 688, 1055
Hpy8I	GTNNAC	3 cut(s)	40, 225, 989
HpyAV	CCTTC	5 cut(s)	28, 238, 485, 537, 695
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4V	TGCA	9 cut(s)	315, 403, 494, 576, 589, 869, 886, 994, 1027
HpyF10VI	GCNNNNNNNGC	1 cut(s)	424
HpyF3I	CTNAG	9 cut(s)	69, 102, 284, 293, 650, 676, 752, 1115, 1138
Hsp92II	CATG	7 cut(s)	340, 417, 517, 583, 613, 842, 1058
Kzo9I	GATC	4 cut(s)	9, 582, 601, 1057
LmnI	GCTCC	2 cut(s)	134, 835
Lsp1109I	GCAGC	5 cut(s)	43, 327, 473, 588, 948
LweI	GCATC	1 cut(s)	327
MaeIII	GTNAC	2 cut(s)	620, 1064
MalI	GATC	4 cut(s)	11, 584, 603, 1059
MboI	GATC	4 cut(s)	9, 582, 601, 1057
MboII	GAAGA	9 cut(s)	40, 43, 148, 218, 401, 710, 831, 931, 1158
MfeI	CAATTG	2 cut(s)	495, 594
MlsI	TGGCCA	2 cut(s)	218, 640
MluCI	AATT	8 cut(s)	108, 162, 465, 481, 495, 594, 924, 1077
MluNI	TGGCCA	2 cut(s)	218, 640
MlyI	GAGTC	4 cut(s)	514, 530, 851, 1132
Mox20I	TGGCCA	2 cut(s)	218, 640
MscI	TGGCCA	2 cut(s)	218, 640
MseI	TTAA	1 cut(s)	713
MslI	CAYNNNNRTG	1 cut(s)	515
Msp20I	TGGCCA	2 cut(s)	218, 640
MspA1I	CMGCKG	2 cut(s)	533, 1094
MspI	CCGG	4 cut(s)	777, 947, 1062, 1143
MspR9I	CCNGG	6 cut(s)	22, 77, 220, 367, 642, 1062
MunI	CAATTG	2 cut(s)	495, 594
Mva1269I	GAATGC	1 cut(s)	332
MvaI	CCWGG	5 cut(s)	22, 77, 220, 367, 642
MvnI	CGCG	1 cut(s)	471
MwoI	GCNNNNNNNGC	1 cut(s)	424
NciI	CCSGG	1 cut(s)	1062
NdeII	GATC	4 cut(s)	9, 582, 601, 1057
NlaIII	CATG	7 cut(s)	340, 417, 517, 583, 613, 842, 1058
NlaIV	GGNNCC	3 cut(s)	6, 19, 617
NmeAIII	GCCGAG	1 cut(s)	990
PagI	TCATGA	2 cut(s)	513, 1054
PctI	GAATGC	1 cut(s)	332
PfeI	GAWTC	4 cut(s)	149, 305, 773, 1085
PflFI	GACNNNGTC	1 cut(s)	662
PfoI	TCCNGGA	1 cut(s)	20
PkrI	GCNGC	8 cut(s)	58, 317, 473, 488, 578, 827, 963, 1093
PleI	GAGTC	4 cut(s)	514, 530, 850, 1131
PpsI	GAGTC	4 cut(s)	514, 530, 850, 1131
Psp6I	CCWGG	5 cut(s)	20, 75, 218, 365, 640
PspEI	GGTNACC	1 cut(s)	1064
PspGI	CCWGG	5 cut(s)	20, 75, 218, 365, 640
PspN4I	GGNNCC	3 cut(s)	6, 19, 617
PspPI	GGNCC	2 cut(s)	5, 18
PstI	CTGCAG	1 cut(s)	578
PstNI	CAGNNNCTG	1 cut(s)	76
PsyI	GACNNNGTC	1 cut(s)	662
RseI	CAYNNNNRTG	1 cut(s)	515
SaqAI	TTAA	1 cut(s)	713
SatI	GCNGC	8 cut(s)	57, 316, 472, 487, 577, 826, 962, 1092
Sau3AI	GATC	4 cut(s)	9, 582, 601, 1057
Sau96I	GGNCC	2 cut(s)	5, 18
SchI	GAGTC	4 cut(s)	514, 530, 851, 1132
ScrFI	CCNGG	6 cut(s)	22, 77, 220, 367, 642, 1062
SfaNI	GCATC	1 cut(s)	327
SfcI	CTRYAG	1 cut(s)	574
SinI	GGWCC	2 cut(s)	5, 18
SmiMI	CAYNNNNRTG	1 cut(s)	515
Sse9I	AATT	8 cut(s)	108, 162, 465, 481, 495, 594, 924, 1077
SsiI	CCGC	7 cut(s)	370, 471, 489, 533, 826, 859, 1092
StyD4I	CCNGG	6 cut(s)	20, 75, 218, 365, 640, 1060
TaaI	ACNGT	1 cut(s)	352
TaqI	TCGA	2 cut(s)	167, 558
TaqII	GACCGA	1 cut(s)	22
TasI	AATT	8 cut(s)	108, 162, 465, 481, 495, 594, 924, 1077
TauI	GCSGC	3 cut(s)	474, 828, 1094
TfiI	GAWTC	4 cut(s)	149, 305, 773, 1085
Tru1I	TTAA	1 cut(s)	713
Tru9I	TTAA	1 cut(s)	713
TscAI	CASTG	1 cut(s)	355
TseI	GCWGC	5 cut(s)	56, 315, 486, 576, 961
TspDTI	ATGAA	3 cut(s)	297, 353, 1047
TspGWI	ACGGA	2 cut(s)	608, 831
TspRI	CASTG	1 cut(s)	355
Tth111I	GACNNNGTC	1 cut(s)	662
VpaK11BI	GGWCC	2 cut(s)	5, 18
XapI	RAATTY	3 cut(s)	162, 465, 1077
XmiI	GTMKAC	1 cut(s)	988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.