Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002733

Physical Location & Seq

Genomic Coordinates Forward (+)

30217652 .. 30222034

Gene Structure 4383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g35001.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGGTCCTGTGAGGGGGCTTAAGAAGAGAAAGAAGGCAGAGAATAATAAGTCTCATGAAGATCACAATGCTTCTGGTTCTGGATCCTCAGAGAAGGAAGGTCCTTTGGATTGGTGGGATGAGTTCTCCAAGAGAATCAATGGTCTTCAGTCTCCAGCAAAGGGTTTGAGTAGGTTTCAATCTATCTTTAAGATGTCCAGAAAAACCTTTGACTACATATGCTCACTTGTGAGAGAAGACATGATGGCTAAGTCGGTACATTTTGTGTTTAACAATGGTACACCATTGTCTTTATATGATCAAGTAGCTGTGGCTTTAAGAAGACTGAGCTCTGGTGAGTCACTAGTAATGATTGGCGATTCATTTGGGCTGAACCACTCTGCTGTGTCTCAAGTGACCTGGCGATTTGTGGAAGCCATGGAACAAAAGGGACTTCACCACCTCCAATGGCCTTCAACTGAAGCAGAAATGGCAGCAATCAAATTAAAATTTCAGAAAATGCAAGGCTTTCCTAATTGTTGTGGTGCTGTTGATACTACTCACATCATGATGTGTTTACCAGCTTCAGACCCGGCAAGCAATACTTGGCTCGATCAGGAGAAGAATTACAGCATGGTCTTGCAGGCCATTGTGGACCCAGACATGAGGTTCCGGGATATAATCACCGGATGGCCAGGGAAAATGAAGGACTGGTTGGTGTTCCAGAGTTCTAAGTTTAATGAACTCTGTGACAAAGGGGAGAGGTTAAATGGGAAAGTATTAGAGCTCTCCAGAGGATTTGATATAAGGGAATACATAATTGGGGATTCAGGCTTTCCTTTACTGCCTTATCTTGTAATTCCCTATGACGGGAATGAACTCCCAGAACATAAAGATGAGTTCAATAAGCGGCAGCGTGCTACCCAAATGGTTGCACAGAGAGCATTAGCAAGGTTGAAGGACTCATGGAGGATCATAGACGGAGTGATGTGGAGACCCGACAAACACAGATTGCCAAGAATAATTCTCGTTTGCTGCCTGCTTCACAACATTGTTATCGACATGGAAGATGAAGTGCTGGAGTACCTGCCTTTGTCTCACAACCATGATGACTCGGCTTACCATCAACAGATTTGTGGAACTCTTGACATAAACGGGGTTCATCTCAGGGATAAGCTGTCTCTCTACTTGTCTGGAAGAATGACATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

397

Amino Acids

45.25

Weight (kDa)

7.22

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_tran	PF04827	161 - 351	6e-10	Plant transposon protein
DDE_Tnp_4	PF13359	177 - 343	1.3e-26	DDE superfamily endonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55350
fragaria_vesca	FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_7g21532 FvH4_7g21532
malus_domestica	MD01G1122200.v1.1 MD03G1099600.v1.1 MD07G1191700.v1.1 MD11G1113800.v1.1
prunus_persica	Prupe.2G229800_v2.0.a1 Prupe.6G084600_v2.0.a1
pyrus_communis	pycom01g14910 pycom03g08200 pycom07g18110 pycom11g09580
rosa_chinensis	RchiOBHm_Chr1g0365861 RchiOBHm_Chr5g0062911
rosa_laevigata	RLG00000027385 RLG00000035589
rosa_multiflora	Rmu_co8388519.1_g000001 Rmu_sc0006406.1_g000002 Rmu_sc0010322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017720 Rroxscaffold_4G00290790 Rroxscaffold_5G00340940
rosa_rugosa	Rorug05G0352700
rosa_samantha	Rh1AG334100 Rh1BG294700 Rh1CG311400 Rh1DG327100 Rh5AG413700 Rh5BG427900 Rh5CG451500 Rh5DG441600
rosa_wichuraiana	Rw1G029640 Rw2G024510 Rw5G038870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1074
AciI	CCGC	1 cut(s)	889
AclWI	GGATC	3 cut(s)	78, 91, 959
AcoI	YGGCCR	1 cut(s)	671
AcsI	RAATTY	1 cut(s)	488
AcuI	CTGAAG	3 cut(s)	131, 480, 549
AfaI	GTAC	3 cut(s)	258, 280, 1064
AfiI	CCNNNNNNNGG	4 cut(s)	14, 161, 848, 849
AflII	CTTAAG	1 cut(s)	20
AgsI	TTSAA	4 cut(s)	179, 456, 883, 937
AhlI	ACTAGT	1 cut(s)	343
AjnI	CCWGG	2 cut(s)	398, 673
AjuI	GAANNNNNNNTTGG	4 cut(s)	677, 709, 783, 815
AluBI	AGCT	5 cut(s)	308, 330, 563, 766, 1156
AluI	AGCT	5 cut(s)	308, 330, 563, 766, 1156
Alw21I	GWGCWC	2 cut(s)	332, 768
Alw26I	GTCTC	6 cut(s)	57, 156, 393, 967, 1080, 1164
AlwI	GGATC	3 cut(s)	78, 91, 959
AoxI	GGCC	3 cut(s)	449, 624, 671
ApeKI	GCWGC	3 cut(s)	473, 892, 1014
ApoI	RAATTY	1 cut(s)	488
AspS9I	GGNCC	3 cut(s)	5, 101, 634
AsuC2I	CCSGG	2 cut(s)	572, 653
AsuHPI	GGTGA	3 cut(s)	347, 428, 655
AvaII	GGWCC	3 cut(s)	5, 101, 634
BalI	TGGCCA	1 cut(s)	673
BamHI	GGATCC	1 cut(s)	83
BanII	GRGCYC	2 cut(s)	332, 768
BbsI	GAAGAC	3 cut(s)	137, 243, 328
Bbv12I	GWGCWC	2 cut(s)	332, 768
BbvI	GCAGC	3 cut(s)	485, 904, 1001
BccI	CCATC	3 cut(s)	238, 663, 1110
BciT130I	CCWGG	2 cut(s)	400, 675
BclI	TGATCA	1 cut(s)	298
BcnI	CCSGG	2 cut(s)	572, 653
BcoDI	GTCTC	6 cut(s)	57, 156, 393, 967, 1080, 1164
BcuI	ACTAGT	1 cut(s)	343
BfaI	CTAG	1 cut(s)	344
BfrI	CTTAAG	1 cut(s)	20
BfuAI	ACCTGC	1 cut(s)	1074
BisI	GCNGC	4 cut(s)	474, 890, 893, 1015
BlsI	GCNGC	4 cut(s)	475, 891, 894, 1016
Bme1390I	CCNGG	4 cut(s)	400, 572, 653, 675
Bme18I	GGWCC	3 cut(s)	5, 101, 634
BmgT120I	GGNCC	3 cut(s)	5, 101, 634
BmiI	GGNNCC	4 cut(s)	6, 85, 636, 650
BmrFI	CCNGG	4 cut(s)	400, 572, 653, 675
BpiI	GAAGAC	3 cut(s)	137, 243, 328
BpmI	CTGGAG	3 cut(s)	138, 754, 1079
BpuEI	CTTGAG	1 cut(s)	375
BpuMI	CCSGG	2 cut(s)	572, 653
BsaI	GGTCTC	1 cut(s)	967
BsaJI	CCNNGG	2 cut(s)	417, 674
BsaWI	WCCGGW	1 cut(s)	665
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 161, 848, 849
Bse1I	ACTGG	1 cut(s)	695
BseBI	CCWGG	2 cut(s)	400, 675
BseDI	CCNNGG	2 cut(s)	417, 674
BseGI	GGATG	2 cut(s)	124, 674
BseLI	CCNNNNNNNGG	4 cut(s)	14, 161, 848, 849
BseMII	CTCAG	3 cut(s)	102, 317, 1159
BseNI	ACTGG	1 cut(s)	695
BseXI	GCAGC	3 cut(s)	485, 904, 1001
BshFI	GGCC	3 cut(s)	451, 626, 673
BsiHKAI	GWGCWC	2 cut(s)	332, 768
BsiSI	CCGG	3 cut(s)	572, 652, 666
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	4 cut(s)	14, 161, 848, 849
BsmAI	GTCTC	6 cut(s)	57, 156, 393, 967, 1080, 1164
BsmFI	GGGAC	1 cut(s)	444
BsnI	GGCC	3 cut(s)	451, 626, 673
Bso31I	GGTCTC	1 cut(s)	967
Bsp1286I	GDGCHC	2 cut(s)	332, 768
Bsp143I	GATC	5 cut(s)	61, 83, 298, 592, 951
Bsp19I	CCATGG	1 cut(s)	417
BspACI	CCGC	1 cut(s)	889
BspANI	GGCC	3 cut(s)	451, 626, 673
BspCNI	CTCAG	3 cut(s)	101, 318, 1158
BspHI	TCATGA	2 cut(s)	55, 546
BspLI	GGNNCC	4 cut(s)	6, 85, 636, 650
BspMI	ACCTGC	1 cut(s)	1074
BspPI	GGATC	3 cut(s)	78, 91, 959
BspTI	CTTAAG	1 cut(s)	20
BspTNI	GGTCTC	1 cut(s)	967
BsrI	ACTGG	1 cut(s)	695
BssECI	CCNNGG	2 cut(s)	417, 674
BssMI	GATC	5 cut(s)	61, 83, 298, 592, 951
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	2 cut(s)	400, 675
Bst6I	CTCTTC	1 cut(s)	20
BstAFI	CTTAAG	1 cut(s)	20
BstC8I	GCNNGC	4 cut(s)	577, 624, 897, 1019
BstDEI	CTNAG	6 cut(s)	88, 249, 326, 711, 1145, 1188
BstDSI	CCRYGG	1 cut(s)	417
BstF5I	GGATG	2 cut(s)	124, 674
BstKTI	GATC	5 cut(s)	64, 86, 301, 595, 954
BstMAI	GTCTC	6 cut(s)	57, 156, 393, 967, 1080, 1164
BstMBI	GATC	5 cut(s)	61, 83, 298, 592, 951
BstMWI	GCNNNNNNNGC	2 cut(s)	470, 920
BstNI	CCWGG	2 cut(s)	400, 675
BstSCI	CCNGG	4 cut(s)	398, 570, 651, 673
BstV1I	GCAGC	3 cut(s)	485, 904, 1001
BstV2I	GAAGAC	3 cut(s)	137, 243, 328
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
BsuRI	GGCC	3 cut(s)	451, 626, 673
BtgI	CCRYGG	1 cut(s)	417
BtsCI	GGATG	2 cut(s)	124, 674
BveI	ACCTGC	1 cut(s)	1074
Cac8I	GCNNGC	4 cut(s)	577, 624, 897, 1019
CciI	TCATGA	2 cut(s)	55, 546
Cfr13I	GGNCC	3 cut(s)	5, 101, 634
Csp6I	GTAC	3 cut(s)	257, 279, 1063
CviAII	CATG	9 cut(s)	56, 241, 418, 547, 613, 643, 945, 1042, 1085
CviQI	GTAC	3 cut(s)	257, 279, 1063
DdeI	CTNAG	6 cut(s)	88, 249, 326, 711, 1145, 1188
DpnI	GATC	5 cut(s)	63, 85, 300, 594, 953
DpnII	GATC	5 cut(s)	61, 83, 298, 592, 951
EaeI	YGGCCR	1 cut(s)	671
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	330, 766
Eco130I	CCWWGG	1 cut(s)	417
Eco24I	GRGCYC	2 cut(s)	332, 768
Eco31I	GGTCTC	1 cut(s)	967
Eco47I	GGWCC	3 cut(s)	5, 101, 634
Eco53kI	GAGCTC	2 cut(s)	330, 766
Eco57I	CTGAAG	3 cut(s)	131, 480, 549
EcoICRI	GAGCTC	2 cut(s)	330, 766
EcoO109I	RGGNCCY	2 cut(s)	5, 101
EcoRII	CCWGG	2 cut(s)	398, 673
EcoT14I	CCWWGG	1 cut(s)	417
EcoT38I	GRGCYC	2 cut(s)	332, 768
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	9 cut(s)	59, 244, 421, 550, 616, 646, 948, 1045, 1088
FalI	AAGNNNNNCTT	2 cut(s)	568, 600
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	9 cut(s)	55, 240, 417, 546, 612, 642, 944, 1041, 1084
FauNDI	CATATG	1 cut(s)	218
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	4 cut(s)	474, 890, 893, 1015
FokI	GGATG	2 cut(s)	131, 681
FriOI	GRGCYC	2 cut(s)	332, 768
Fsp4HI	GCNGC	4 cut(s)	474, 890, 893, 1015
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	4 cut(s)	474, 890, 893, 1015
GsuI	CTGGAG	3 cut(s)	138, 754, 1079
HaeIII	GGCC	3 cut(s)	451, 626, 673
HapII	CCGG	3 cut(s)	572, 652, 666
Hin1II	CATG	9 cut(s)	59, 244, 421, 550, 616, 646, 948, 1045, 1088
HinfI	GANTC	6 cut(s)	135, 338, 359, 806, 941, 1091
HpaII	CCGG	3 cut(s)	572, 652, 666
HphI	GGTGA	3 cut(s)	347, 428, 655
Hpy166II	GTNNAC	3 cut(s)	281, 557, 634
Hpy188I	TCNGA	3 cut(s)	91, 495, 568
Hpy188III	TCNNGA	9 cut(s)	56, 81, 198, 547, 596, 703, 771, 1124, 1173
Hpy8I	GTNNAC	3 cut(s)	281, 557, 634
HpyAV	CCTTC	6 cut(s)	28, 88, 92, 462, 679, 931
HpyCH4V	TGCA	3 cut(s)	502, 622, 914
HpyF10VI	GCNNNNNNNGC	2 cut(s)	470, 920
HpyF3I	CTNAG	6 cut(s)	88, 249, 326, 711, 1145, 1188
Hsp92II	CATG	9 cut(s)	59, 244, 421, 550, 616, 646, 948, 1045, 1088
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	5 cut(s)	61, 83, 298, 592, 951
Lsp1109I	GCAGC	3 cut(s)	485, 904, 1001
MaeI	CTAG	1 cut(s)	344
MaeIII	GTNAC	3 cut(s)	339, 394, 728
MalI	GATC	5 cut(s)	63, 85, 300, 594, 953
MboI	GATC	5 cut(s)	61, 83, 298, 592, 951
MboII	GAAGA	8 cut(s)	37, 71, 137, 248, 333, 613, 1058, 1188
MflI	RGATCY	1 cut(s)	83
MhlI	GDGCHC	2 cut(s)	332, 768
MlsI	TGGCCA	1 cut(s)	673
MluCI	AATT	7 cut(s)	482, 488, 514, 604, 798, 837, 1002
MluNI	TGGCCA	1 cut(s)	673
MlyI	GAGTC	3 cut(s)	347, 935, 1085
MnlI	CCTC	7 cut(s)	6, 97, 452, 639, 735, 767, 942
Mox20I	TGGCCA	1 cut(s)	673
MscI	TGGCCA	1 cut(s)	673
MseI	TTAA	7 cut(s)	21, 189, 270, 317, 485, 717, 746
MslI	CAYNNNNRTG	3 cut(s)	548, 873, 1083
Msp20I	TGGCCA	1 cut(s)	673
MspCI	CTTAAG	1 cut(s)	20
MspI	CCGG	3 cut(s)	572, 652, 666
MspR9I	CCNGG	4 cut(s)	400, 572, 653, 675
MvaI	CCWGG	2 cut(s)	400, 675
MwoI	GCNNNNNNNGC	2 cut(s)	470, 920
NciI	CCSGG	2 cut(s)	572, 653
NcoI	CCATGG	1 cut(s)	417
NdeI	CATATG	1 cut(s)	218
NdeII	GATC	5 cut(s)	61, 83, 298, 592, 951
NlaIII	CATG	9 cut(s)	59, 244, 421, 550, 616, 646, 948, 1045, 1088
NlaIV	GGNNCC	4 cut(s)	6, 85, 636, 650
NmeAIII	GCCGAG	1 cut(s)	1073
NmuCI	GTSAC	3 cut(s)	339, 394, 728
PagI	TCATGA	2 cut(s)	55, 546
PfeI	GAWTC	3 cut(s)	135, 359, 806
PfoI	TCCNGGA	1 cut(s)	651
PkrI	GCNGC	4 cut(s)	475, 891, 894, 1016
PleI	GAGTC	3 cut(s)	346, 935, 1085
PpsI	GAGTC	3 cut(s)	346, 935, 1085
PpuMI	RGGWCCY	2 cut(s)	5, 101
Psp124BI	GAGCTC	2 cut(s)	332, 768
Psp5II	RGGWCCY	2 cut(s)	5, 101
Psp6I	CCWGG	2 cut(s)	398, 673
PspGI	CCWGG	2 cut(s)	398, 673
PspN4I	GGNNCC	4 cut(s)	6, 85, 636, 650
PspPI	GGNCC	3 cut(s)	5, 101, 634
PspPPI	RGGWCCY	2 cut(s)	5, 101
PsuI	RGATCY	1 cut(s)	83
RsaI	GTAC	3 cut(s)	258, 280, 1064
RsaNI	GTAC	3 cut(s)	257, 279, 1063
RseI	CAYNNNNRTG	3 cut(s)	548, 873, 1083
SacI	GAGCTC	2 cut(s)	332, 768
SaqAI	TTAA	7 cut(s)	21, 189, 270, 317, 485, 717, 746
SatI	GCNGC	4 cut(s)	474, 890, 893, 1015
Sau3AI	GATC	5 cut(s)	61, 83, 298, 592, 951
Sau96I	GGNCC	3 cut(s)	5, 101, 634
SchI	GAGTC	3 cut(s)	347, 935, 1085
ScrFI	CCNGG	4 cut(s)	400, 572, 653, 675
SduI	GDGCHC	2 cut(s)	332, 768
SinI	GGWCC	3 cut(s)	5, 101, 634
SmiMI	CAYNNNNRTG	3 cut(s)	548, 873, 1083
SmlI	CTYRAG	2 cut(s)	20, 390
SmoI	CTYRAG	2 cut(s)	20, 390
SpeI	ACTAGT	1 cut(s)	343
Sse9I	AATT	7 cut(s)	482, 488, 514, 604, 798, 837, 1002
SsiI	CCGC	1 cut(s)	889
SspMI	CTAG	1 cut(s)	344
SstI	GAGCTC	2 cut(s)	332, 768
StyD4I	CCNGG	4 cut(s)	398, 570, 651, 673
StyI	CCWWGG	1 cut(s)	417
TaqI	TCGA	2 cut(s)	591, 1038
TasI	AATT	7 cut(s)	482, 488, 514, 604, 798, 837, 1002
TauI	GCSGC	1 cut(s)	892
TfiI	GAWTC	3 cut(s)	135, 359, 806
Tru1I	TTAA	7 cut(s)	21, 189, 270, 317, 485, 717, 746
Tru9I	TTAA	7 cut(s)	21, 189, 270, 317, 485, 717, 746
TseFI	GTSAC	3 cut(s)	339, 394, 728
TseI	GCWGC	3 cut(s)	473, 892, 1014
Tsp45I	GTSAC	3 cut(s)	339, 394, 728
TspDTI	ATGAA	7 cut(s)	72, 351, 698, 735, 870, 1065, 1130
TspGWI	ACGGA	1 cut(s)	975
Vha464I	CTTAAG	1 cut(s)	20
VpaK11BI	GGWCC	3 cut(s)	5, 101, 634
XapI	RAATTY	1 cut(s)	488
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.