Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002733

Physical Location & Seq

Genomic Coordinates Reverse (-)

36166560 .. 36168531

Gene Structure 1972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G024510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGGCCCCATCAGAGGAATGAAGAGGAGGAAGAAGACTGAACAAAAGAATGTGCTTCCTGCTGCTCCACAGAGTCCTCAGCCCGAGCCACTGGATTGGTGGTACGAGTTCCAGCAGAGGATTACTGGAAACTTCGGTTGCACCAAAAAGCTCGGGCAAGAGATACAAGATGAAAGCAAGAAGGATGAAGCCAAGAAAATCACCCAGGCTTGCTGTAGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

74

Amino Acids

8.52

Weight (kDa)

9.33

Isoelectric Point (pI)

73.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55350
fragaria_vesca	FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_7g21532 FvH4_7g21532
malus_domestica	MD01G1122200.v1.1 MD03G1099600.v1.1 MD07G1191700.v1.1 MD11G1113800.v1.1
prunus_persica	Prupe.2G229800_v2.0.a1 Prupe.6G084600_v2.0.a1
pyrus_communis	pycom01g14910 pycom03g08200 pycom07g18110 pycom11g09580
rosa_chinensis	RchiOBHm_Chr1g0365861 RchiOBHm_Chr5g0062911
rosa_laevigata	RLG00000027385 RLG00000035589
rosa_multiflora	Rmu_co8388519.1_g000001 Rmu_sc0006406.1_g000002 Rmu_sc0010322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017720 Rroxscaffold_4G00290790 Rroxscaffold_5G00340940
rosa_rugosa	Rorug05G0352700
rosa_samantha	Rh1AG334100 Rh1BG294700 Rh1CG311400 Rh1DG327100 Rh5AG413700 Rh5BG427900 Rh5CG451500 Rh5DG441600
rosa_wichuraiana	Rw1G029640 Rw2G024510 Rw5G038870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Ama87I	CYCGRG	2 cut(s)	83, 152
AoxI	GGCC	1 cut(s)	4
ApaI	GGGCCC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	62
AspS9I	GGNCC	2 cut(s)	4, 5
AsuHPI	GGTGA	1 cut(s)	193
AvaI	CYCGRG	2 cut(s)	83, 152
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	41
BbvCI	CCTCAGC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	17
BciT130I	CCWGG	1 cut(s)	206
BfmI	CTRYAG	1 cut(s)	214
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	206
BmeT110I	CYCGRG	2 cut(s)	83, 152
BmgT120I	GGNCC	2 cut(s)	4, 5
BmiI	GGNNCC	2 cut(s)	6, 7
BmrFI	CCNGG	1 cut(s)	206
BpiI	GAAGAC	1 cut(s)	41
Bpu10I	CCTNAGC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	2 cut(s)	96, 130
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	2 cut(s)	96, 130
BseRI	GAGGAG	1 cut(s)	40
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	49
BshFI	GGCC	1 cut(s)	6
BsiHKCI	CYCGRG	2 cut(s)	83, 152
BslI	CCNNNNNNNGG	1 cut(s)	14
BsnI	GGCC	1 cut(s)	6
BsoBI	CYCGRG	2 cut(s)	83, 152
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	6
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	6, 7
BsrI	ACTGG	2 cut(s)	96, 130
BssECI	CCNNGG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	190
BstNI	CCWGG	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	204
BstSFI	CTRYAG	1 cut(s)	214
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	41
BstXI	CCANNNNNNTGG	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	89
Cac8I	GCNNGC	1 cut(s)	211
Cfr13I	GGNCC	2 cut(s)	4, 5
Csp6I	GTAC	1 cut(s)	103
CviJI	RGCY	6 cut(s)	6, 82, 88, 151, 191, 209
CviKI_1	RGCY	6 cut(s)	6, 82, 88, 151, 191, 209
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	8
Eco88I	CYCGRG	2 cut(s)	83, 152
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	8
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	1 cut(s)	197
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	73
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	14, 224
HpyAV	CCTTC	1 cut(s)	175
HpyCH4V	TGCA	1 cut(s)	141
HpyF3I	CTNAG	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	6 cut(s)	72, 77, 111, 125, 191, 218
Lsp1109I	GCAGC	1 cut(s)	49
MboII	GAAGA	3 cut(s)	34, 43, 46
MhlI	GDGCHC	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	82
MnlI	CCTC	5 cut(s)	8, 18, 21, 87, 111
MspR9I	CCNGG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	206
NlaIV	GGNNCC	2 cut(s)	6, 7
PkrI	GCNGC	1 cut(s)	64
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	2 cut(s)	6, 7
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	2 cut(s)	4, 5
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SatI	GCNGC	1 cut(s)	63
Sau96I	GGNCC	2 cut(s)	4, 5
SchI	GAGTC	1 cut(s)	82
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	1 cut(s)	153
SfcI	CTRYAG	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	204
TscAI	CASTG	1 cut(s)	96
TseI	GCWGC	1 cut(s)	62
TspDTI	ATGAA	3 cut(s)	35, 186, 201
TspRI	CASTG	1 cut(s)	96
XcmI	CCANNNNNNNNNTGG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.