Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002733

Physical Location & Seq

Genomic Coordinates Reverse (-)

6586136 .. 6588924

Gene Structure 2789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGGTCCTGTGAGGGGGATTAGGAAGAGAAAGAAGGCTGACAACAAGGGTGAGGAGAATGCTTCTGGTTCCGGGTCATCAGAGAAGGAAGGTCCTGTGGATTGGTGGGATGAATTCTCCAGGAGAATCAATGGTGTGCAGTTTCCGTCCAAGGTATTAGACAAGTTTGAATCAGTTTTTAAGCTTTCCAGGAAAACCTTTGACTACATCTGTTCGCTGGTGAGTGAAGATATGATGGCTAAGTCAGCACATTTTGTGTTTACAAGCGGTAAACCCTTGTCTTTGCACGATCAAGTAGCTGTAGCCTTAAGAAGATTGAGCTCTGGCGAGTCATTGGTGACAATTGGTGATTCGTTTGGGGTGAACCACTCAACTGTGTCTCAAGTTACCTGGCGTTTTGTTGAAGCCATGGAAGAAAGAGGACTTCACCACCTGCAATGGCCTTCCACTGAAGCAGAAATGACAGAAGTTAAATCCAAGTTTCAGAAAATACGAGGCTTTCCTAATTGTTGCGGTGTCGTTGATACCACTCACATCATGATGTGTTTGCCTACTTCAGACCCCACGAGTAATGCCTGGCTCGACCAAGAGAAGAATCACAGCATGGTCTTGCAGGCCATTGTTGATCCTGACATGAGGTTTCGGGACATAGTCACCGGATGGCCAGGAAAAATGAAGGACTGGTCGGTGTTTCAGAGTTCAAACTTTTATCAACTCTGTGAGAGAGGTGAGAGGTTGAATGGGAAAAGGTTAGAGCTCTCCACAGGATTGGATATCCGGGAATACATAATCGGGGACTTGGGATTTCCTTTACTGCCCTATCTCGTAATCCCCTATGAAGGGAAAGAACTCCCAGAGCCGAAAGCTCAGTTCAATAAGCGGCATTATGCTACGCAGAAGGTAGCGCAGAGAGCATTGGCGAGGTTGAAGGATAGGTGGAGGATCATTCAAGGAGTGATGTGGAGACCTGACAAACATAGATTTCCAAGGATCATTCTTGTTTGCTGCTTGCTTCACAACATTGTTATAGATATGGAAGACGGGGTTCAAGACGAAATGCCTCAGCCTCACAAACACGACTCAGAATACCGCCAACAGATTTGTGGAACTGTTGACATAAACGGCGTTCATCTGAGAGACAAGCTGTCTCTTTACTTGTCTGGAAGGATGCCAATGCCGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

395

Amino Acids

45.15

Weight (kDa)

8.52

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_tran	PF04827	153 - 347	8.4e-11	Plant transposon protein
DDE_Tnp_4	PF13359	174 - 340	1.9e-27	DDE superfamily endonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55350
fragaria_vesca	FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_7g21532 FvH4_7g21532
malus_domestica	MD01G1122200.v1.1 MD03G1099600.v1.1 MD07G1191700.v1.1 MD11G1113800.v1.1
prunus_persica	Prupe.2G229800_v2.0.a1 Prupe.6G084600_v2.0.a1
pyrus_communis	pycom01g14910 pycom03g08200 pycom07g18110 pycom11g09580
rosa_chinensis	RchiOBHm_Chr1g0365861 RchiOBHm_Chr5g0062911
rosa_laevigata	RLG00000027385 RLG00000035589
rosa_multiflora	Rmu_co8388519.1_g000001 Rmu_sc0006406.1_g000002 Rmu_sc0010322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017720 Rroxscaffold_4G00290790 Rroxscaffold_5G00340940
rosa_rugosa	Rorug05G0352700
rosa_samantha	Rh1AG334100 Rh1BG294700 Rh1CG311400 Rh1DG327100 Rh5AG413700 Rh5BG427900 Rh5CG451500 Rh5DG441600
rosa_wichuraiana	Rw1G029640 Rw2G024510 Rw5G038870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	441
Acc36I	ACCTGC	1 cut(s)	441
AciI	CCGC	5 cut(s)	267, 513, 880, 1090, 1178
AclWI	GGATC	3 cut(s)	620, 950, 998
AcoI	YGGCCR	1 cut(s)	662
AcsI	RAATTY	1 cut(s)	113
AcuI	CTGAAG	2 cut(s)	471, 540
AfiI	CCNNNNNNNGG	3 cut(s)	14, 839, 840
AflII	CTTAAG	1 cut(s)	307
AgsI	TTSAA	8 cut(s)	170, 404, 702, 739, 874, 928, 950, 1049
AhdI	GACNNNNNGTC	1 cut(s)	1144
AjnI	CCWGG	5 cut(s)	119, 188, 389, 575, 664
AluBI	AGCT	6 cut(s)	184, 299, 321, 757, 866, 1144
AluI	AGCT	6 cut(s)	184, 299, 321, 757, 866, 1144
Alw21I	GWGCWC	2 cut(s)	323, 759
Alw26I	GTCTC	4 cut(s)	384, 958, 1131, 1152
AlwI	GGATC	3 cut(s)	620, 950, 998
AoxI	GGCC	3 cut(s)	440, 615, 662
ApeKI	GCWGC	1 cut(s)	1005
ApoI	RAATTY	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	907
AspS9I	GGNCC	2 cut(s)	5, 92
AsuC2I	CCSGG	2 cut(s)	73, 779
AsuHPI	GGTGA	8 cut(s)	62, 232, 349, 359, 373, 419, 646, 740
AvaII	GGWCC	2 cut(s)	5, 92
BalI	TGGCCA	1 cut(s)	664
BanII	GRGCYC	2 cut(s)	323, 759
BauI	CACGAG	1 cut(s)	565
BbsI	GAAGAC	1 cut(s)	1044
Bbv12I	GWGCWC	2 cut(s)	323, 759
BbvCI	CCTCAGC	1 cut(s)	1062
BbvI	GCAGC	1 cut(s)	992
BccI	CCATC	2 cut(s)	229, 654
BceAI	ACGGC	1 cut(s)	1138
BciT130I	CCWGG	5 cut(s)	121, 190, 391, 577, 666
BcnI	CCSGG	2 cut(s)	73, 779
BcoDI	GTCTC	4 cut(s)	384, 958, 1131, 1152
BfmI	CTRYAG	1 cut(s)	300
BfrI	CTTAAG	1 cut(s)	307
BfuAI	ACCTGC	1 cut(s)	441
BisI	GCNGC	3 cut(s)	881, 1006, 1178
BlsI	GCNGC	3 cut(s)	882, 1007, 1179
Bme1390I	CCNGG	7 cut(s)	73, 121, 190, 391, 577, 666, 779
Bme18I	GGWCC	2 cut(s)	5, 92
BmeRI	GACNNNNNGTC	1 cut(s)	1144
BmgT120I	GGNCC	2 cut(s)	5, 92
BmiI	GGNNCC	2 cut(s)	6, 70
BmrFI	CCNGG	7 cut(s)	73, 121, 190, 391, 577, 666, 779
BmsI	GCATC	1 cut(s)	1158
BpiI	GAAGAC	1 cut(s)	1044
BpmI	CTGGAG	1 cut(s)	103
Bpu10I	CCTNAGC	1 cut(s)	1062
BpuEI	CTTGAG	1 cut(s)	366
BpuMI	CCSGG	2 cut(s)	73, 779
BsaI	GGTCTC	1 cut(s)	958
BsaJI	CCNNGG	3 cut(s)	150, 408, 986
BsaWI	WCCGGW	1 cut(s)	656
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 839, 840
Bse1I	ACTGG	1 cut(s)	686
Bse3DI	GCAATG	1 cut(s)	443
BseBI	CCWGG	5 cut(s)	121, 190, 391, 577, 666
BseDI	CCNNGG	3 cut(s)	150, 408, 986
BseGI	GGATG	3 cut(s)	115, 665, 1173
BseLI	CCNNNNNNNGG	3 cut(s)	14, 839, 840
BseMI	GCAATG	1 cut(s)	443
BseMII	CTCAG	4 cut(s)	881, 1076, 1095, 1124
BseNI	ACTGG	1 cut(s)	686
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	992
BsgI	GTGCAG	1 cut(s)	158
BshFI	GGCC	3 cut(s)	442, 617, 664
BsiHKAI	GWGCWC	2 cut(s)	323, 759
BsiSI	CCGG	3 cut(s)	72, 657, 778
BslFI	GGGAC	2 cut(s)	659, 809
BslI	CCNNNNNNNGG	3 cut(s)	14, 839, 840
BsmAI	GTCTC	4 cut(s)	384, 958, 1131, 1152
BsmFI	GGGAC	2 cut(s)	659, 809
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	3 cut(s)	442, 617, 664
Bso31I	GGTCTC	1 cut(s)	958
Bsp1286I	GDGCHC	2 cut(s)	323, 759
Bsp143I	GATC	4 cut(s)	289, 625, 942, 990
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	5 cut(s)	267, 513, 880, 1090, 1178
BspANI	GGCC	3 cut(s)	442, 617, 664
BspCNI	CTCAG	4 cut(s)	880, 1075, 1094, 1125
BspHI	TCATGA	1 cut(s)	537
BspLI	GGNNCC	2 cut(s)	6, 70
BspMI	ACCTGC	1 cut(s)	441
BspPI	GGATC	3 cut(s)	620, 950, 998
BspTI	CTTAAG	1 cut(s)	307
BspTNI	GGTCTC	1 cut(s)	958
BsrDI	GCAATG	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	686
BssECI	CCNNGG	3 cut(s)	150, 408, 986
BssMI	GATC	4 cut(s)	289, 625, 942, 990
BssSI	CACGAG	1 cut(s)	565
BssT1I	CCWWGG	3 cut(s)	150, 408, 986
Bst2BI	CACGAG	1 cut(s)	565
Bst2UI	CCWGG	5 cut(s)	121, 190, 391, 577, 666
Bst4CI	ACNGT	2 cut(s)	376, 1111
Bst6I	CTCTTC	1 cut(s)	20
BstAFI	CTTAAG	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	615, 1010
BstDEI	CTNAG	5 cut(s)	240, 867, 1062, 1081, 1133
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	3 cut(s)	115, 665, 1173
BstHHI	GCGC	1 cut(s)	907
BstKTI	GATC	4 cut(s)	292, 628, 945, 993
BstMAI	GTCTC	4 cut(s)	384, 958, 1131, 1152
BstMBI	GATC	4 cut(s)	289, 625, 942, 990
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 911, 1177
BstNI	CCWGG	5 cut(s)	121, 190, 391, 577, 666
BstSCI	CCNGG	7 cut(s)	71, 119, 188, 389, 575, 664, 777
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	992
BstV2I	GAAGAC	1 cut(s)	1044
BstXI	CCANNNNNNTGG	1 cut(s)	769
BsuRI	GGCC	3 cut(s)	442, 617, 664
BtgI	CCRYGG	1 cut(s)	408
BtsCI	GGATG	3 cut(s)	115, 665, 1173
BtsIMutI	CAGTG	1 cut(s)	447
BveI	ACCTGC	1 cut(s)	441
Cac8I	GCNNGC	2 cut(s)	615, 1010
CciI	TCATGA	1 cut(s)	537
CfoI	GCGC	1 cut(s)	907
Cfr13I	GGNCC	2 cut(s)	5, 92
CviAII	CATG	4 cut(s)	409, 538, 604, 634
DdeI	CTNAG	5 cut(s)	240, 867, 1062, 1081, 1133
DpnI	GATC	4 cut(s)	291, 627, 944, 992
DpnII	GATC	4 cut(s)	289, 625, 942, 990
DriI	GACNNNNNGTC	1 cut(s)	1144
EaeI	YGGCCR	1 cut(s)	662
Eam1104I	CTCTTC	1 cut(s)	20
Eam1105I	GACNNNNNGTC	1 cut(s)	1144
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	321, 757
Eco130I	CCWWGG	3 cut(s)	150, 408, 986
Eco24I	GRGCYC	2 cut(s)	323, 759
Eco31I	GGTCTC	1 cut(s)	958
Eco32I	GATATC	1 cut(s)	775
Eco47I	GGWCC	2 cut(s)	5, 92
Eco53kI	GAGCTC	2 cut(s)	321, 757
Eco57I	CTGAAG	2 cut(s)	471, 540
EcoICRI	GAGCTC	2 cut(s)	321, 757
EcoO109I	RGGNCCY	2 cut(s)	5, 92
EcoRI	GAATTC	1 cut(s)	113
EcoRII	CCWGG	5 cut(s)	119, 188, 389, 575, 664
EcoRV	GATATC	1 cut(s)	775
EcoT14I	CCWWGG	3 cut(s)	150, 408, 986
EcoT38I	GRGCYC	2 cut(s)	323, 759
ErhI	CCWWGG	3 cut(s)	150, 408, 986
FaeI	CATG	4 cut(s)	412, 541, 607, 637
FaqI	GGGAC	2 cut(s)	659, 809
FatI	CATG	4 cut(s)	408, 537, 603, 633
Fnu4HI	GCNGC	3 cut(s)	881, 1006, 1178
FokI	GGATG	3 cut(s)	122, 672, 1180
FriOI	GRGCYC	2 cut(s)	323, 759
Fsp4HI	GCNGC	3 cut(s)	881, 1006, 1178
GlaI	GCGC	1 cut(s)	906
GluI	GCNGC	3 cut(s)	881, 1006, 1178
GsuI	CTGGAG	1 cut(s)	103
HaeIII	GGCC	3 cut(s)	442, 617, 664
HapII	CCGG	3 cut(s)	72, 657, 778
HhaI	GCGC	1 cut(s)	907
Hin1II	CATG	4 cut(s)	412, 541, 607, 637
Hin6I	GCGC	1 cut(s)	905
HinP1I	GCGC	1 cut(s)	905
HincII	GTYRAC	1 cut(s)	1114
HindII	GTYRAC	1 cut(s)	1114
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	6 cut(s)	126, 170, 329, 350, 595, 1079
HpaII	CCGG	3 cut(s)	72, 657, 778
HphI	GGTGA	8 cut(s)	62, 232, 349, 359, 373, 419, 646, 740
Hpy166II	GTNNAC	4 cut(s)	261, 272, 364, 1114
Hpy188I	TCNGA	6 cut(s)	82, 486, 559, 696, 1084, 1134
Hpy188III	TCNNGA	5 cut(s)	538, 629, 644, 1049, 1161
Hpy8I	GTNNAC	4 cut(s)	261, 272, 364, 1114
HpyAV	CCTTC	9 cut(s)	28, 79, 83, 453, 670, 833, 892, 922, 1158
HpyCH4III	ACNGT	2 cut(s)	376, 1111
HpyCH4V	TGCA	4 cut(s)	139, 286, 436, 613
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 911, 1177
HpyF3I	CTNAG	5 cut(s)	240, 867, 1062, 1081, 1133
Hsp92II	CATG	4 cut(s)	412, 541, 607, 637
HspAI	GCGC	1 cut(s)	905
Kzo9I	GATC	4 cut(s)	289, 625, 942, 990
Lsp1109I	GCAGC	1 cut(s)	992
LweI	GCATC	1 cut(s)	1158
MaeIII	GTNAC	3 cut(s)	337, 385, 652
MalI	GATC	4 cut(s)	291, 627, 944, 992
MboI	GATC	4 cut(s)	289, 625, 942, 990
MboII	GAAGA	6 cut(s)	37, 239, 324, 425, 604, 1049
MfeI	CAATTG	1 cut(s)	342
MhlI	GDGCHC	2 cut(s)	323, 759
MlsI	TGGCCA	1 cut(s)	664
MluCI	AATT	3 cut(s)	113, 342, 505
MluNI	TGGCCA	1 cut(s)	664
MlyI	GAGTC	2 cut(s)	338, 1073
Mox20I	TGGCCA	1 cut(s)	664
MscI	TGGCCA	1 cut(s)	664
MseI	TTAA	3 cut(s)	180, 308, 471
MslI	CAYNNNNRTG	1 cut(s)	539
Msp20I	TGGCCA	1 cut(s)	664
MspCI	CTTAAG	1 cut(s)	307
MspI	CCGG	3 cut(s)	72, 657, 778
MspR9I	CCNGG	7 cut(s)	73, 121, 190, 391, 577, 666, 779
MunI	CAATTG	1 cut(s)	342
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	5 cut(s)	121, 190, 391, 577, 666
MwoI	GCNNNNNNNGC	3 cut(s)	245, 911, 1177
NciI	CCSGG	2 cut(s)	73, 779
NcoI	CCATGG	1 cut(s)	408
NdeII	GATC	4 cut(s)	289, 625, 942, 990
NlaIII	CATG	4 cut(s)	412, 541, 607, 637
NlaIV	GGNNCC	2 cut(s)	6, 70
NmuCI	GTSAC	2 cut(s)	337, 652
PagI	TCATGA	1 cut(s)	537
PaqCI	CACCTGC	1 cut(s)	441
PctI	GAATGC	1 cut(s)	64
PfeI	GAWTC	4 cut(s)	126, 170, 350, 595
PflFI	GACNNNGTC	1 cut(s)	650
PfoI	TCCNGGA	3 cut(s)	119, 188, 777
PkrI	GCNGC	3 cut(s)	882, 1007, 1179
PleI	GAGTC	2 cut(s)	337, 1073
PpsI	GAGTC	2 cut(s)	337, 1073
PpuMI	RGGWCCY	2 cut(s)	5, 92
Psp124BI	GAGCTC	2 cut(s)	323, 759
Psp5II	RGGWCCY	2 cut(s)	5, 92
Psp6I	CCWGG	5 cut(s)	119, 188, 389, 575, 664
PspGI	CCWGG	5 cut(s)	119, 188, 389, 575, 664
PspN4I	GGNNCC	2 cut(s)	6, 70
PspPI	GGNCC	2 cut(s)	5, 92
PspPPI	RGGWCCY	2 cut(s)	5, 92
PsyI	GACNNNGTC	1 cut(s)	650
RseI	CAYNNNNRTG	1 cut(s)	539
SacI	GAGCTC	2 cut(s)	323, 759
SaqAI	TTAA	3 cut(s)	180, 308, 471
SatI	GCNGC	3 cut(s)	881, 1006, 1178
Sau3AI	GATC	4 cut(s)	289, 625, 942, 990
Sau96I	GGNCC	2 cut(s)	5, 92
SchI	GAGTC	2 cut(s)	338, 1073
ScrFI	CCNGG	7 cut(s)	73, 121, 190, 391, 577, 666, 779
SduI	GDGCHC	2 cut(s)	323, 759
SfaNI	GCATC	1 cut(s)	1158
SfcI	CTRYAG	1 cut(s)	300
SinI	GGWCC	2 cut(s)	5, 92
SmiMI	CAYNNNNRTG	1 cut(s)	539
SmlI	CTYRAG	2 cut(s)	307, 381
SmoI	CTYRAG	2 cut(s)	307, 381
Sse9I	AATT	3 cut(s)	113, 342, 505
SsiI	CCGC	5 cut(s)	267, 513, 880, 1090, 1178
SstI	GAGCTC	2 cut(s)	323, 759
StyD4I	CCNGG	7 cut(s)	71, 119, 188, 389, 575, 664, 777
StyI	CCWWGG	3 cut(s)	150, 408, 986
TaaI	ACNGT	2 cut(s)	376, 1111
TaqI	TCGA	1 cut(s)	582
TasI	AATT	3 cut(s)	113, 342, 505
TauI	GCSGC	2 cut(s)	883, 1180
TfiI	GAWTC	4 cut(s)	126, 170, 350, 595
Tru1I	TTAA	3 cut(s)	180, 308, 471
Tru9I	TTAA	3 cut(s)	180, 308, 471
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	2 cut(s)	337, 652
TseI	GCWGC	1 cut(s)	1005
Tsp45I	GTSAC	2 cut(s)	337, 652
TspDTI	ATGAA	4 cut(s)	126, 689, 852, 1118
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	454
Tth111I	GACNNNGTC	1 cut(s)	650
Vha464I	CTTAAG	1 cut(s)	307
VpaK11BI	GGWCC	2 cut(s)	5, 92
XapI	RAATTY	1 cut(s)	113
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.