Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002733

Physical Location & Seq

Genomic Coordinates Forward (+)

17213798 .. 17217686

Gene Structure 3889 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g21532.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGGGCCCATTAGAGGAGTGAAGAGGAGGAAGAACACTGAACCGAAGAGGCTTGACCAGAATGTGCTTGCTGCTGCTACCCTGAGCCCTCAGCCTGAGCCACTTGATTGGTGGGAAGAGTTTCAACAGATAATTACTGGGCCTCTATCTGAATCAGAACACAAAATGAAATTTGAATCTCTCTTCAAAATTTCGAGAAGGACATTCAATCACATTTGTTCACTTGTAAAGGAGCGTATGGCGACTAGGAACTTCAGTACCAAAAATGGAAAGCGTTTGTCTCTACAAGACCAAGTTGCTGTTGCTCTTAGGAGGCTTAGCTCTGGTGAATCGCTAACGAACGTTGGTGACTCCTTTGGGATGAGCCAAACAACTGTTTCTCAGGTAACCTGGCGGTTTGTGGAAGCAATGGAAGAGAGAGGGCTCCACCATCTTTGTTGGCCTAAAGAGCAAGGTGAAATGGAAGAGATAAAGTCCAAGTTTGAAAGAATTCGTGGCCTTCCAAATTGCTGTGGTGCAATCGACATCACTCACATCACGATGACTGTGCCTGCAACTGACGACTCATCAGATGTCTGGCTCGATGATGAGAAAAACTGCAGCATGACATTGCAGGCAGTTGTAGACCCTGATATGAGATTCCGTAACATAGTTACTGGATGGCCAGGAAGTCTGAGTGATGACATTGTCCTCCAAAGCTCAGGTTTCTTCAAACTGTGTGAAGAAGGAACTTATTTAAATGGGAAGGAAATGGTGCTGTCTGAAGGAACAGAAGTAAGAGAGTACATAGTAGGAGATTCTGGTTTTCCACTTTTGGAATGGCTAATGACTCCTTACCAGGGAACAAAACTCTCAGATGATAAGGCAGAGTTTAACAAGAGACTTTCTGCAACCCAAATGGTGGCAAGGAGAGCATTTGTGAGGTTGAAAGAGAGGTGGAAACTAATTCAAGGAGCATTGTGGTTGCCTGATAAGAATAAGCTGCCGAGGATTATTCTCGCTTGCTGCATACTGCATAACATAATCATTGATATGGAGGATCAGGTGCAGGATGACATGCCTTTATCGCACCACCATGATTCGGGTTACCACCACCAGAGTTGTGAATCTGCTGATAAAACTGGCTCTCTTCTGAGAGAGAAACTTTCTTTATACTTTTCTGGACAACTACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

392

Amino Acids

44.59

Weight (kDa)

6.16

Isoelectric Point (pI)

52.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF8040	PF26138	53 - 137	9e-06	Domain of unknown function (DUF8040)
Plant_tran	PF04827	153 - 348	2.7e-15	Plant transposon protein
DDE_Tnp_4	PF13359	174 - 340	2.9e-32	DDE superfamily endonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55350
fragaria_vesca	FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_7g21532 FvH4_7g21532
malus_domestica	MD01G1122200.v1.1 MD03G1099600.v1.1 MD07G1191700.v1.1 MD11G1113800.v1.1
prunus_persica	Prupe.2G229800_v2.0.a1 Prupe.6G084600_v2.0.a1
pyrus_communis	pycom01g14910 pycom03g08200 pycom07g18110 pycom11g09580
rosa_chinensis	RchiOBHm_Chr1g0365861 RchiOBHm_Chr5g0062911
rosa_laevigata	RLG00000027385 RLG00000035589
rosa_multiflora	Rmu_co8388519.1_g000001 Rmu_sc0006406.1_g000002 Rmu_sc0010322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017720 Rroxscaffold_4G00290790 Rroxscaffold_5G00340940
rosa_rugosa	Rorug05G0352700
rosa_samantha	Rh1AG334100 Rh1BG294700 Rh1CG311400 Rh1DG327100 Rh5AG413700 Rh5BG427900 Rh5CG451500 Rh5DG441600
rosa_wichuraiana	Rw1G029640 Rw2G024510 Rw5G038870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	901
AccI	GTMKAC	1 cut(s)	624
AciI	CCGC	1 cut(s)	394
AclI	AACGTT	1 cut(s)	342
AclWI	GGATC	1 cut(s)	1047
AcoI	YGGCCR	1 cut(s)	662
AcsI	RAATTY	3 cut(s)	170, 189, 489
AcuI	CTGAAG	2 cut(s)	238, 783
AfaI	GTAC	2 cut(s)	259, 785
AfiI	CCNNNNNNNGG	4 cut(s)	14, 839, 901, 1081
AgsI	TTSAA	8 cut(s)	125, 176, 187, 208, 485, 712, 928, 950
AjnI	CCWGG	3 cut(s)	389, 664, 837
AluBI	AGCT	3 cut(s)	321, 699, 982
AluI	AGCT	3 cut(s)	321, 699, 982
Alw26I	GTCTC	2 cut(s)	285, 874
AlwI	GGATC	1 cut(s)	1047
AoxI	GGCC	5 cut(s)	5, 140, 440, 496, 662
ApaI	GGGCCC	1 cut(s)	9
ApeKI	GCWGC	5 cut(s)	71, 74, 600, 982, 1005
ApoI	RAATTY	3 cut(s)	170, 189, 489
Asp700I	GAANNNNTTC	2 cut(s)	120, 489
AspS9I	GGNCC	3 cut(s)	5, 6, 140
AsuHPI	GGTGA	3 cut(s)	338, 359, 467
BaeGI	GKGCMC	1 cut(s)	9
BaeI	ACNNNNGTAYC	2 cut(s)	241, 274
BalI	TGGCCA	1 cut(s)	664
BanII	GRGCYC	3 cut(s)	9, 89, 426
BbvCI	CCTCAGC	1 cut(s)	90
BbvI	GCAGC	5 cut(s)	58, 61, 612, 969, 992
BccI	CCATC	2 cut(s)	438, 654
BcgI	CGANNNNNNTGC	2 cut(s)	529, 563
BciT130I	CCWGG	3 cut(s)	391, 666, 839
BcoDI	GTCTC	2 cut(s)	285, 874
BfaI	CTAG	1 cut(s)	246
BfmI	CTRYAG	1 cut(s)	598
BisI	GCNGC	5 cut(s)	72, 75, 601, 983, 1006
BlpI	GCTNAGC	1 cut(s)	317
BlsI	GCNGC	5 cut(s)	73, 76, 602, 984, 1007
Bme1390I	CCNGG	3 cut(s)	391, 666, 839
BmgT120I	GGNCC	3 cut(s)	5, 6, 140
BmiI	GGNNCC	3 cut(s)	6, 7, 425
BmrFI	CCNGG	3 cut(s)	391, 666, 839
BmrI	ACTGGG	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	147
Bpu10I	CCTNAGC	4 cut(s)	83, 90, 96, 700
Bpu1102I	GCTNAGC	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	838, 986
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 839, 901, 1081
Bse1I	ACTGG	3 cut(s)	142, 661, 1126
Bse3DI	GCAATG	2 cut(s)	414, 608
BseBI	CCWGG	3 cut(s)	391, 666, 839
BseDI	CCNNGG	2 cut(s)	838, 986
BseGI	GGATG	3 cut(s)	366, 665, 1057
BseLI	CCNNNNNNNGG	4 cut(s)	14, 839, 901, 1081
BseMI	GCAATG	2 cut(s)	414, 608
BseMII	CTCAG	8 cut(s)	74, 87, 104, 395, 665, 714, 867, 1124
BseNI	ACTGG	3 cut(s)	142, 661, 1126
BseRI	GAGGAG	2 cut(s)	30, 40
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	5 cut(s)	58, 61, 612, 969, 992
BsgI	GTGCAG	1 cut(s)	1067
BshFI	GGCC	5 cut(s)	7, 142, 442, 498, 664
BslI	CCNNNNNNNGG	4 cut(s)	14, 839, 901, 1081
BsmAI	GTCTC	2 cut(s)	285, 874
BsnI	GGCC	5 cut(s)	7, 142, 442, 498, 664
Bsp120I	GGGCCC	1 cut(s)	5
Bsp1286I	GDGCHC	3 cut(s)	9, 89, 426
Bsp143I	GATC	1 cut(s)	1039
Bsp1720I	GCTNAGC	1 cut(s)	317
BspACI	CCGC	1 cut(s)	394
BspANI	GGCC	5 cut(s)	7, 142, 442, 498, 664
BspCNI	CTCAG	8 cut(s)	75, 88, 103, 394, 666, 713, 866, 1125
BspLI	GGNNCC	3 cut(s)	6, 7, 425
BspMAI	CTGCAG	1 cut(s)	602
BspPI	GGATC	1 cut(s)	1047
BsrDI	GCAATG	2 cut(s)	414, 608
BsrI	ACTGG	3 cut(s)	142, 661, 1126
BssECI	CCNNGG	2 cut(s)	838, 986
BssMI	GATC	1 cut(s)	1039
Bst2UI	CCWGG	3 cut(s)	391, 666, 839
Bst4CI	ACNGT	3 cut(s)	376, 547, 717
Bst6I	CTCTTC	7 cut(s)	17, 41, 111, 188, 408, 459, 1134
BstC8I	GCNNGC	4 cut(s)	69, 552, 615, 1003
BstEII	GGTNACC	2 cut(s)	385, 1085
BstF5I	GGATG	3 cut(s)	366, 665, 1057
BstKTI	GATC	1 cut(s)	1042
BstMAI	GTCTC	2 cut(s)	285, 874
BstMBI	GATC	1 cut(s)	1039
BstMWI	GCNNNNNNNGC	3 cut(s)	448, 911, 1066
BstNI	CCWGG	3 cut(s)	391, 666, 839
BstNSI	RCATGY	1 cut(s)	1060
BstPI	GGTNACC	2 cut(s)	385, 1085
BstSCI	CCNGG	3 cut(s)	389, 664, 837
BstSFI	CTRYAG	1 cut(s)	598
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	5 cut(s)	58, 61, 612, 969, 992
BstXI	CCANNNNNNTGG	1 cut(s)	108
BsuRI	GGCC	5 cut(s)	7, 142, 442, 498, 664
BtsCI	GGATG	3 cut(s)	366, 665, 1057
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	4 cut(s)	69, 552, 615, 1003
Cfr13I	GGNCC	3 cut(s)	5, 6, 140
Csp6I	GTAC	2 cut(s)	258, 784
CspCI	CAANNNNNGTGG	4 cut(s)	416, 451, 1082, 1117
CviAII	CATG	4 cut(s)	604, 1057, 1076, 1173
CviQI	GTAC	2 cut(s)	258, 784
DpnI	GATC	1 cut(s)	1041
DpnII	GATC	1 cut(s)	1039
DraI	TTTAAA	1 cut(s)	738
EaeI	YGGCCR	1 cut(s)	662
Eam1104I	CTCTTC	7 cut(s)	17, 41, 111, 188, 408, 459, 1134
EarI	CTCTTC	7 cut(s)	17, 41, 111, 188, 408, 459, 1134
Eco24I	GRGCYC	3 cut(s)	9, 89, 426
Eco57I	CTGAAG	2 cut(s)	238, 783
Eco91I	GGTNACC	2 cut(s)	385, 1085
EcoO109I	RGGNCCY	1 cut(s)	5
EcoO65I	GGTNACC	2 cut(s)	385, 1085
EcoRI	GAATTC	1 cut(s)	489
EcoRII	CCWGG	3 cut(s)	389, 664, 837
EcoT38I	GRGCYC	3 cut(s)	9, 89, 426
FaeI	CATG	4 cut(s)	607, 1060, 1079, 1176
FatI	CATG	4 cut(s)	603, 1056, 1075, 1172
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	5 cut(s)	72, 75, 601, 983, 1006
FokI	GGATG	3 cut(s)	373, 672, 1064
FriOI	GRGCYC	3 cut(s)	9, 89, 426
Fsp4HI	GCNGC	5 cut(s)	72, 75, 601, 983, 1006
FspBI	CTAG	1 cut(s)	246
GluI	GCNGC	5 cut(s)	72, 75, 601, 983, 1006
HaeIII	GGCC	5 cut(s)	7, 142, 442, 498, 664
Hin1II	CATG	4 cut(s)	607, 1060, 1079, 1176
HphI	GGTGA	3 cut(s)	338, 359, 467
Hpy166II	GTNNAC	2 cut(s)	221, 625
Hpy188I	TCNGA	7 cut(s)	151, 157, 571, 675, 763, 856, 1134
Hpy188III	TCNNGA	3 cut(s)	195, 538, 1161
Hpy8I	GTNNAC	2 cut(s)	221, 625
HpyAV	CCTTC	5 cut(s)	192, 509, 719, 739, 758
HpyCH4III	ACNGT	3 cut(s)	376, 547, 717
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	8 cut(s)	518, 554, 600, 613, 890, 1008, 1015, 1048
HpyF10VI	GCNNNNNNNGC	3 cut(s)	448, 911, 1066
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	4 cut(s)	607, 1060, 1079, 1176
Kzo9I	GATC	1 cut(s)	1039
LmnI	GCTCC	3 cut(s)	232, 429, 953
Lsp1109I	GCAGC	5 cut(s)	58, 61, 612, 969, 992
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	5 cut(s)	347, 385, 644, 652, 1085
MalI	GATC	1 cut(s)	1041
MboI	GATC	1 cut(s)	1039
MhlI	GDGCHC	3 cut(s)	9, 89, 426
MlsI	TGGCCA	1 cut(s)	664
MluCI	AATT	6 cut(s)	132, 170, 189, 489, 505, 945
MluNI	TGGCCA	1 cut(s)	664
MlyI	GAGTC	3 cut(s)	344, 557, 823
Mox20I	TGGCCA	1 cut(s)	664
MroXI	GAANNNNTTC	2 cut(s)	120, 489
MscI	TGGCCA	1 cut(s)	664
MseI	TTAA	2 cut(s)	737, 873
MslI	CAYNNNNRTG	3 cut(s)	539, 1031, 1074
Msp20I	TGGCCA	1 cut(s)	664
MspR9I	CCNGG	3 cut(s)	391, 666, 839
MvaI	CCWGG	3 cut(s)	391, 666, 839
MwoI	GCNNNNNNNGC	3 cut(s)	448, 911, 1066
NdeII	GATC	1 cut(s)	1039
NlaIII	CATG	4 cut(s)	607, 1060, 1079, 1176
NlaIV	GGNNCC	3 cut(s)	6, 7, 425
NmeAIII	GCCGAG	1 cut(s)	1011
NmuCI	GTSAC	1 cut(s)	347
NspI	RCATGY	1 cut(s)	1060
PdmI	GAANNNNTTC	2 cut(s)	120, 489
PfeI	GAWTC	7 cut(s)	152, 176, 329, 639, 797, 1079, 1106
PflFI	GACNNNGTC	1 cut(s)	686
PflMI	CCANNNNNTGG	1 cut(s)	901
PkrI	GCNGC	5 cut(s)	73, 76, 602, 984, 1007
PleI	GAGTC	3 cut(s)	344, 557, 823
PpsI	GAGTC	3 cut(s)	344, 557, 823
Psp1406I	AACGTT	1 cut(s)	342
Psp6I	CCWGG	3 cut(s)	389, 664, 837
PspEI	GGTNACC	2 cut(s)	385, 1085
PspGI	CCWGG	3 cut(s)	389, 664, 837
PspN4I	GGNNCC	3 cut(s)	6, 7, 425
PspOMI	GGGCCC	1 cut(s)	5
PspPI	GGNCC	3 cut(s)	5, 6, 140
PstI	CTGCAG	1 cut(s)	602
PsyI	GACNNNGTC	1 cut(s)	686
RsaI	GTAC	2 cut(s)	259, 785
RsaNI	GTAC	2 cut(s)	258, 784
RseI	CAYNNNNRTG	3 cut(s)	539, 1031, 1074
SaqAI	TTAA	2 cut(s)	737, 873
SatI	GCNGC	5 cut(s)	72, 75, 601, 983, 1006
Sau3AI	GATC	1 cut(s)	1039
Sau96I	GGNCC	3 cut(s)	5, 6, 140
SchI	GAGTC	3 cut(s)	344, 557, 823
ScrFI	CCNGG	3 cut(s)	391, 666, 839
SduI	GDGCHC	3 cut(s)	9, 89, 426
SfcI	CTRYAG	1 cut(s)	598
SmiI	ATTTAAAT	1 cut(s)	738
SmiMI	CAYNNNNRTG	3 cut(s)	539, 1031, 1074
Sse9I	AATT	6 cut(s)	132, 170, 189, 489, 505, 945
SsiI	CCGC	1 cut(s)	394
SspMI	CTAG	1 cut(s)	246
StyD4I	CCNGG	3 cut(s)	389, 664, 837
SwaI	ATTTAAAT	1 cut(s)	738
TaaI	ACNGT	3 cut(s)	376, 547, 717
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	3 cut(s)	194, 522, 582
TasI	AATT	6 cut(s)	132, 170, 189, 489, 505, 945
TatI	WGTACW	1 cut(s)	783
TfiI	GAWTC	7 cut(s)	152, 176, 329, 639, 797, 1079, 1106
Tru1I	TTAA	2 cut(s)	737, 873
Tru9I	TTAA	2 cut(s)	737, 873
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	5 cut(s)	71, 74, 600, 982, 1005
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	1 cut(s)	182
TspGWI	ACGGA	1 cut(s)	632
TspRI	CASTG	1 cut(s)	43
Tth111I	GACNNNGTC	1 cut(s)	686
Van91I	CCANNNNNTGG	1 cut(s)	901
XapI	RAATTY	3 cut(s)	170, 189, 489
XceI	RCATGY	1 cut(s)	1060
XcmI	CCANNNNNNNNNTGG	2 cut(s)	108, 816
XmiI	GTMKAC	1 cut(s)	624
XmnI	GAANNNNTTC	2 cut(s)	120, 489
XspI	CTAG	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.