Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002733

Physical Location & Seq

Genomic Coordinates Forward (+)

23557435 .. 23560981

Gene Structure 3547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1122200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGGACCGATCAGAGGGTCCAGGAGGAAGAAGAAGGTTGACCAGAATGTGTTAGCTGCTTCAGACTCTCAGACCCTGGAATGTTGGTGGGATGGCTTCTCTCAGAGAATTACGGGTCAATCAAAATCTAAAGGCGCATTGAAATTTGAATCTTTCTTCAAAATTTCGATAAAGACATTCGCCTACATCTGTTCGCTTGTAAAGGAAGATATGATGGCCAGGTCAACCTTCTGCTACTCAAATAACAAGCCATTATGTCTGAATGACCAAGTTGCTATCGCTCTTAGGAGGCTCAGCTCGGGTGATTCTTTGTGCAGCATCGGTGAATGCTTTGGCATGAACCAATCCACTGTTTCGCACATAACCTGGCGGTTTGTGGAAGTAATGGAAGAAAAAGCTCTGCACCATCTGTCATGGCCTAAAGAGCAGGGTGAAATGGAGGAGATAAAGTCCAAGTTTGAGAAAATTCGCGGCCTTCCAAATTGCTGCGGTGCAATTGACATCACACACATCATGATGACTCTGCCTTCAGCGGACTCATCAGATGATGTCTGGCTCGATGGCCAGGAAAACTGCAGCATGATCTTGCAGGCAATTGTTGATCCAGACATGAGGTTCCGTAACATAATCACAGGATGGCCAGGAAGTCTGAGTGATGACATGGTCCTTAAAAGCTCAGGTTTTTTCATGATGTCCGAAGAAGGAGATTACTTAAATGGGGAGAAGTTAGTGCTTTCACAAGGAACGGAAGTGAGAGAATACGTAGTAGGAGATTCCGGCTTTCCTCTCTTGCCGTGGCTTCTCACTCCTTACAACAGAAGAGGCCGCCTCTGGGAGCATGAGTCTGATTTCAACAAGCGGATTTTTGCAACGCAGATGGTGGCGCAAAGGGCGTTGGTGTGGCTGAAAGAGACGTGGAAGATAATTCAAGGCGTCATGTGGAAGCCGGATAAGAACAAGCTGCCGAGGATTATTCTTGTTTGCTGTATACTGCACAATATAGTGATTGATATGGAGGATAAGGTGCAAGATGAAATGCCATCGTCTCGCCATCATGATCCCGGTTACCAGCAACAAATTTGTGAATCTGCCGCTGACGATATGGCGTTTCAACTGAGAGAGAATCTCTCAATATACTTAGCCGGAAGATTGTCTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

387

Amino Acids

44.06

Weight (kDa)

5.97

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_tran	PF04827	145 - 341	5.5e-11	Plant transposon protein
DDE_Tnp_4	PF13359	166 - 333	6e-26	DDE superfamily endonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55350
fragaria_vesca	FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_7g21532 FvH4_7g21532
malus_domestica	MD01G1122200.v1.1 MD03G1099600.v1.1 MD07G1191700.v1.1 MD11G1113800.v1.1
prunus_persica	Prupe.2G229800_v2.0.a1 Prupe.6G084600_v2.0.a1
pyrus_communis	pycom01g14910 pycom03g08200 pycom07g18110 pycom11g09580
rosa_chinensis	RchiOBHm_Chr1g0365861 RchiOBHm_Chr5g0062911
rosa_laevigata	RLG00000027385 RLG00000035589
rosa_multiflora	Rmu_co8388519.1_g000001 Rmu_sc0006406.1_g000002 Rmu_sc0010322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017720 Rroxscaffold_4G00290790 Rroxscaffold_5G00340940
rosa_rugosa	Rorug05G0352700
rosa_samantha	Rh1AG334100 Rh1BG294700 Rh1CG311400 Rh1DG327100 Rh5AG413700 Rh5BG427900 Rh5CG451500 Rh5DG441600
rosa_wichuraiana	Rw1G029640 Rw2G024510 Rw5G038870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	988
AccII	CGCG	1 cut(s)	471
AciI	CCGC	7 cut(s)	370, 471, 489, 533, 826, 859, 1092
AclWI	GGATC	2 cut(s)	596, 1052
AcoI	YGGCCR	3 cut(s)	216, 562, 638
AcsI	RAATTY	4 cut(s)	143, 162, 465, 1077
AcuI	CTGAAG	2 cut(s)	45, 513
AcyI	GRCGYC	1 cut(s)	933
AfiI	CCNNNNNNNGG	2 cut(s)	14, 832
AgsI	TTSAA	6 cut(s)	142, 149, 160, 853, 929, 1112
AjiI	CACGTC	1 cut(s)	915
AjnI	CCWGG	6 cut(s)	20, 75, 218, 365, 564, 640
AluBI	AGCT	5 cut(s)	56, 297, 398, 675, 961
AluI	AGCT	5 cut(s)	56, 297, 398, 675, 961
Alw26I	GTCTC	2 cut(s)	905, 1050
AlwI	GGATC	2 cut(s)	596, 1052
AlwNI	CAGNNNCTG	1 cut(s)	76
Ama87I	CYCGRG	1 cut(s)	298
AoxI	GGCC	6 cut(s)	216, 416, 472, 562, 638, 823
ApeKI	GCWGC	5 cut(s)	56, 315, 486, 576, 961
ApoI	RAATTY	4 cut(s)	143, 162, 465, 1077
AspLEI	GCGC	2 cut(s)	137, 886
AspS9I	GGNCC	3 cut(s)	5, 18, 664
AsuC2I	CCSGG	1 cut(s)	1062
AsuHPI	GGTGA	3 cut(s)	314, 335, 443
AvaI	CYCGRG	1 cut(s)	298
AvaII	GGWCC	3 cut(s)	5, 18, 664
BalI	TGGCCA	3 cut(s)	218, 564, 640
BbvI	GCAGC	5 cut(s)	43, 327, 473, 588, 948
BccI	CCATC	8 cut(s)	86, 208, 414, 554, 630, 871, 1048, 1059
BceAI	ACGGC	1 cut(s)	778
BciT130I	CCWGG	6 cut(s)	22, 77, 220, 367, 566, 642
BcnI	CCSGG	1 cut(s)	1062
BcoDI	GTCTC	2 cut(s)	905, 1050
BfmI	CTRYAG	1 cut(s)	574
BisI	GCNGC	8 cut(s)	57, 316, 472, 487, 577, 826, 962, 1092
BlpI	GCTNAGC	1 cut(s)	293
BlsI	GCNGC	8 cut(s)	58, 317, 473, 488, 578, 827, 963, 1093
Bme1390I	CCNGG	7 cut(s)	22, 77, 220, 367, 566, 642, 1062
Bme18I	GGWCC	3 cut(s)	5, 18, 664
BmeT110I	CYCGRG	1 cut(s)	298
BmgBI	CACGTC	1 cut(s)	915
BmgT120I	GGNCC	3 cut(s)	5, 18, 664
BmiI	GGNNCC	3 cut(s)	6, 19, 617
BmrFI	CCNGG	7 cut(s)	22, 77, 220, 367, 566, 642, 1062
BmsI	GCATC	1 cut(s)	327
BplI	GAGNNNNNCTC	6 cut(s)	813, 845, 1110, 1142, 1112, 1144
Bpu10I	CCTNAGC	1 cut(s)	676
Bpu1102I	GCTNAGC	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	1062
BsaAI	YACGTR	1 cut(s)	763
BsaHI	GRCGYC	1 cut(s)	933
BsaJI	CCNNGG	3 cut(s)	75, 794, 965
BsaXI	ACNNNNNCTCC	4 cut(s)	434, 464, 827, 857
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 832
BseBI	CCWGG	6 cut(s)	22, 77, 220, 367, 566, 642
BseDI	CCNNGG	3 cut(s)	75, 794, 965
BseGI	GGATG	2 cut(s)	97, 641
BseLI	CCNNNNNNNGG	2 cut(s)	14, 832
BseMII	CTCAG	6 cut(s)	83, 116, 307, 641, 690, 1106
BseRI	GAGGAG	1 cut(s)	455
BseXI	GCAGC	5 cut(s)	43, 327, 473, 588, 948
BsgI	GTGCAG	3 cut(s)	334, 386, 977
Bsh1236I	CGCG	1 cut(s)	471
BshFI	GGCC	6 cut(s)	218, 418, 474, 564, 640, 825
BsiHKCI	CYCGRG	1 cut(s)	298
BsiSI	CCGG	4 cut(s)	777, 947, 1062, 1143
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	14, 832
BsmAI	GTCTC	2 cut(s)	905, 1050
BsmBI	CGTCTC	2 cut(s)	905, 1050
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	332
BsnI	GGCC	6 cut(s)	218, 418, 474, 564, 640, 825
BsoBI	CYCGRG	1 cut(s)	298
Bsp143I	GATC	4 cut(s)	9, 582, 601, 1057
Bsp1720I	GCTNAGC	1 cut(s)	293
BspACI	CCGC	7 cut(s)	370, 471, 489, 533, 826, 859, 1092
BspANI	GGCC	6 cut(s)	218, 418, 474, 564, 640, 825
BspCNI	CTCAG	6 cut(s)	82, 115, 306, 642, 689, 1107
BspFNI	CGCG	1 cut(s)	471
BspHI	TCATGA	3 cut(s)	513, 687, 1054
BspLI	GGNNCC	3 cut(s)	6, 19, 617
BspMAI	CTGCAG	1 cut(s)	578
BspPI	GGATC	2 cut(s)	596, 1052
BssECI	CCNNGG	3 cut(s)	75, 794, 965
BssMI	GATC	4 cut(s)	9, 582, 601, 1057
BssNAI	GTATAC	1 cut(s)	989
BssNI	GRCGYC	1 cut(s)	933
Bst1107I	GTATAC	1 cut(s)	989
Bst2UI	CCWGG	6 cut(s)	22, 77, 220, 367, 566, 642
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	1 cut(s)	814
BstACI	GRCGYC	1 cut(s)	933
BstBAI	YACGTR	1 cut(s)	763
BstC8I	GCNNGC	1 cut(s)	591
BstDEI	CTNAG	8 cut(s)	69, 102, 284, 293, 650, 676, 1115, 1138
BstDSI	CCRYGG	1 cut(s)	794
BstEII	GGTNACC	1 cut(s)	1064
BstF5I	GGATG	2 cut(s)	97, 641
BstFNI	CGCG	1 cut(s)	471
BstHHI	GCGC	2 cut(s)	137, 886
BstKTI	GATC	4 cut(s)	12, 585, 604, 1060
BstMAI	GTCTC	2 cut(s)	905, 1050
BstMBI	GATC	4 cut(s)	9, 582, 601, 1057
BstMWI	GCNNNNNNNGC	2 cut(s)	424, 890
BstNI	CCWGG	6 cut(s)	22, 77, 220, 367, 566, 642
BstPI	GGTNACC	1 cut(s)	1064
BstSCI	CCNGG	7 cut(s)	20, 75, 218, 365, 564, 640, 1060
BstSFI	CTRYAG	1 cut(s)	574
BstSNI	TACGTA	1 cut(s)	763
BstUI	CGCG	1 cut(s)	471
BstV1I	GCAGC	5 cut(s)	43, 327, 473, 588, 948
BstZ17I	GTATAC	1 cut(s)	989
BsuRI	GGCC	6 cut(s)	218, 418, 474, 564, 640, 825
BtgI	CCRYGG	1 cut(s)	794
BtrI	CACGTC	1 cut(s)	915
BtsCI	GGATG	2 cut(s)	97, 641
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	591
CaiI	CAGNNNCTG	1 cut(s)	76
CciI	TCATGA	3 cut(s)	513, 687, 1054
CfoI	GCGC	2 cut(s)	137, 886
Cfr13I	GGNCC	3 cut(s)	5, 18, 664
CseI	GACGC	1 cut(s)	922
DdeI	CTNAG	8 cut(s)	69, 102, 284, 293, 650, 676, 1115, 1138
DpnI	GATC	4 cut(s)	11, 584, 603, 1059
DpnII	GATC	4 cut(s)	9, 582, 601, 1057
EaeI	YGGCCR	3 cut(s)	216, 562, 638
Eam1104I	CTCTTC	1 cut(s)	814
EarI	CTCTTC	1 cut(s)	814
Eco105I	TACGTA	1 cut(s)	763
Eco47I	GGWCC	3 cut(s)	5, 18, 664
Eco57I	CTGAAG	2 cut(s)	45, 513
Eco88I	CYCGRG	1 cut(s)	298
Eco91I	GGTNACC	1 cut(s)	1064
EcoO65I	GGTNACC	1 cut(s)	1064
EcoRII	CCWGG	6 cut(s)	20, 75, 218, 365, 564, 640
Esp3I	CGTCTC	2 cut(s)	905, 1050
FaqI	GGGAC	1 cut(s)	18
FblI	GTMKAC	1 cut(s)	988
Fnu4HI	GCNGC	8 cut(s)	57, 316, 472, 487, 577, 826, 962, 1092
FokI	GGATG	2 cut(s)	104, 648
Fsp4HI	GCNGC	8 cut(s)	57, 316, 472, 487, 577, 826, 962, 1092
GlaI	GCGC	2 cut(s)	136, 885
GluI	GCNGC	8 cut(s)	57, 316, 472, 487, 577, 826, 962, 1092
HaeIII	GGCC	6 cut(s)	218, 418, 474, 564, 640, 825
HapII	CCGG	4 cut(s)	777, 947, 1062, 1143
HgaI	GACGC	1 cut(s)	922
HhaI	GCGC	2 cut(s)	137, 886
Hin1I	GRCGYC	1 cut(s)	933
Hin6I	GCGC	2 cut(s)	135, 884
HinP1I	GCGC	2 cut(s)	135, 884
HincII	GTYRAC	2 cut(s)	40, 225
HindII	GTYRAC	2 cut(s)	40, 225
HinfI	GANTC	9 cut(s)	65, 149, 305, 520, 536, 773, 842, 1085, 1123
HpaII	CCGG	4 cut(s)	777, 947, 1062, 1143
HphI	GGTGA	3 cut(s)	314, 335, 443
Hpy166II	GTNNAC	3 cut(s)	40, 225, 989
Hpy188I	TCNGA	9 cut(s)	14, 64, 72, 105, 261, 544, 651, 697, 847
Hpy188III	TCNNGA	4 cut(s)	514, 605, 688, 1055
Hpy8I	GTNNAC	3 cut(s)	40, 225, 989
HpyAV	CCTTC	5 cut(s)	28, 238, 485, 537, 695
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4IV	ACGT	2 cut(s)	762, 914
HpyCH4V	TGCA	8 cut(s)	315, 403, 494, 576, 589, 869, 994, 1027
HpyF10VI	GCNNNNNNNGC	2 cut(s)	424, 890
HpyF3I	CTNAG	8 cut(s)	69, 102, 284, 293, 650, 676, 1115, 1138
HpySE526I	ACGT	2 cut(s)	762, 914
Hsp92I	GRCGYC	1 cut(s)	933
HspAI	GCGC	2 cut(s)	135, 884
Kzo9I	GATC	4 cut(s)	9, 582, 601, 1057
LmnI	GCTCC	1 cut(s)	835
Lsp1109I	GCAGC	5 cut(s)	43, 327, 473, 588, 948
LweI	GCATC	1 cut(s)	327
MaeII	ACGT	2 cut(s)	762, 914
MaeIII	GTNAC	2 cut(s)	620, 1064
MalI	GATC	4 cut(s)	11, 584, 603, 1059
MboI	GATC	4 cut(s)	9, 582, 601, 1057
MboII	GAAGA	9 cut(s)	40, 43, 148, 218, 401, 710, 831, 931, 1158
MfeI	CAATTG	2 cut(s)	495, 594
MlsI	TGGCCA	3 cut(s)	218, 564, 640
MluCI	AATT	9 cut(s)	108, 143, 162, 465, 481, 495, 594, 924, 1077
MluNI	TGGCCA	3 cut(s)	218, 564, 640
MlyI	GAGTC	4 cut(s)	59, 514, 530, 851
Mox20I	TGGCCA	3 cut(s)	218, 564, 640
MscI	TGGCCA	3 cut(s)	218, 564, 640
MseI	TTAA	2 cut(s)	669, 713
MslI	CAYNNNNRTG	1 cut(s)	515
Msp20I	TGGCCA	3 cut(s)	218, 564, 640
MspA1I	CMGCKG	2 cut(s)	533, 1094
MspI	CCGG	4 cut(s)	777, 947, 1062, 1143
MspR9I	CCNGG	7 cut(s)	22, 77, 220, 367, 566, 642, 1062
MunI	CAATTG	2 cut(s)	495, 594
Mva1269I	GAATGC	1 cut(s)	332
MvaI	CCWGG	6 cut(s)	22, 77, 220, 367, 566, 642
MvnI	CGCG	1 cut(s)	471
MwoI	GCNNNNNNNGC	2 cut(s)	424, 890
NciI	CCSGG	1 cut(s)	1062
NdeII	GATC	4 cut(s)	9, 582, 601, 1057
NlaIV	GGNNCC	3 cut(s)	6, 19, 617
NmeAIII	GCCGAG	1 cut(s)	990
PagI	TCATGA	3 cut(s)	513, 687, 1054
PctI	GAATGC	1 cut(s)	332
PfeI	GAWTC	5 cut(s)	149, 305, 773, 1085, 1123
PflFI	GACNNNGTC	1 cut(s)	662
PfoI	TCCNGGA	1 cut(s)	20
PkrI	GCNGC	8 cut(s)	58, 317, 473, 488, 578, 827, 963, 1093
PleI	GAGTC	4 cut(s)	59, 514, 530, 850
PpsI	GAGTC	4 cut(s)	59, 514, 530, 850
Ppu21I	YACGTR	1 cut(s)	763
Psp6I	CCWGG	6 cut(s)	20, 75, 218, 365, 564, 640
PspEI	GGTNACC	1 cut(s)	1064
PspGI	CCWGG	6 cut(s)	20, 75, 218, 365, 564, 640
PspN4I	GGNNCC	3 cut(s)	6, 19, 617
PspPI	GGNCC	3 cut(s)	5, 18, 664
PstI	CTGCAG	1 cut(s)	578
PstNI	CAGNNNCTG	1 cut(s)	76
PsyI	GACNNNGTC	1 cut(s)	662
RseI	CAYNNNNRTG	1 cut(s)	515
SaqAI	TTAA	2 cut(s)	669, 713
SatI	GCNGC	8 cut(s)	57, 316, 472, 487, 577, 826, 962, 1092
Sau3AI	GATC	4 cut(s)	9, 582, 601, 1057
Sau96I	GGNCC	3 cut(s)	5, 18, 664
SchI	GAGTC	4 cut(s)	59, 514, 530, 851
ScrFI	CCNGG	7 cut(s)	22, 77, 220, 367, 566, 642, 1062
SfaNI	GCATC	1 cut(s)	327
SfcI	CTRYAG	1 cut(s)	574
SinI	GGWCC	3 cut(s)	5, 18, 664
SmiMI	CAYNNNNRTG	1 cut(s)	515
SnaBI	TACGTA	1 cut(s)	763
Sse9I	AATT	9 cut(s)	108, 143, 162, 465, 481, 495, 594, 924, 1077
SsiI	CCGC	7 cut(s)	370, 471, 489, 533, 826, 859, 1092
StyD4I	CCNGG	7 cut(s)	20, 75, 218, 365, 564, 640, 1060
TaaI	ACNGT	1 cut(s)	352
TaiI	ACGT	2 cut(s)	765, 917
TaqI	TCGA	2 cut(s)	167, 558
TaqII	GACCGA	1 cut(s)	22
TasI	AATT	9 cut(s)	108, 143, 162, 465, 481, 495, 594, 924, 1077
TauI	GCSGC	3 cut(s)	474, 828, 1094
TfiI	GAWTC	5 cut(s)	149, 305, 773, 1085, 1123
Tru1I	TTAA	2 cut(s)	669, 713
Tru9I	TTAA	2 cut(s)	669, 713
TscAI	CASTG	1 cut(s)	355
TseI	GCWGC	5 cut(s)	56, 315, 486, 576, 961
TspDTI	ATGAA	3 cut(s)	353, 676, 1047
TspGWI	ACGGA	2 cut(s)	608, 761
TspRI	CASTG	1 cut(s)	355
Tth111I	GACNNNGTC	1 cut(s)	662
VpaK11BI	GGWCC	3 cut(s)	5, 18, 664
XapI	RAATTY	4 cut(s)	143, 162, 465, 1077
XmiI	GTMKAC	1 cut(s)	988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.