Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002733

Physical Location & Seq

Genomic Coordinates Reverse (-)

21713407 .. 21717973

Gene Structure 4567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00017720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGGTCCTGTGAGGGGTCTTAAGAAGAGAAAGAAGGCAGAGAAGAACAAGTCTCATGAAGATCAAAATGCTTCTGGTTCTGGGTCCTCAGAGAAGGAAGGTCCTTTGGATTGGTGGGATGAGTTCTCCAAGAGAATCAATGCTTTTTTGAACAGTGTTCTTATGTTGCTTGTGTATGTTCCAGTGTTTGATGTCTTCGTAGTTGGAACTGGATTTGTAGGTAGGAATGCTGAACTTGAAGTAACTCTATATATAGGGCTTACCAGCTTAGACTTCAGTTACCTACCTCTCAATCTTTTATCTTGTGCATGTGAAGACTGTCTTCAGTCTCCAGCAAAGGGTTTAAGTAGGTTTCAATCTATCTTTAAGATGTCCAGAAAAACCTTTGACTACATATGCTCACTTGTAAGTGAAGAAATGATGGCTAAGTCAGCACATTTTGTGTTTAATAATGGTACGCCATTGTCTTTATATGATCAAGTAGCTGTGGCTTTAAGAAGACTGAGCTCTGGTGAGTCACTAGTAATGATTGGTGATTCATTTGGGCTGAACCACTCTGCCGTGTCTCAAGTGACCTGGCGATTTGTGGAAGCCATGGAACAAAAGGGACTTCACCACCTGCAATGGCCTTCAACTGAAGCAGAAATGGCAGAAATCAAATTGAAATTTCAGAAAATGCAAGGGTTTCCTAATTGTTGTGGTGCTGTTGATACTACTCATATCATGATGTGTTTACCAGCTTCAGACCCCACAAGTAATGCATGGCTCGATCACGAGAAGAATTACAGCATGGTCTTGCAGGCCATTGTGGACCCGGACATGAGGTTCCGGGACATAATCACCGGATGGCCAGGGAAAATGAAGGACTGGTTGGTGTTTCAGAGTTCTAAGTTTCATGAACTCTGTGATAAAGGAGAGAGGTTGAATGGGAAAGTATTAGAGCTCTCCAAAGGATTTGATATAAGGGAATACATAATTGGGGATTCAGGCTTTCCTTTACGGCCTTATCTTGTAATCCCCTATGAAGGGAAAGAACTCCCAGAACAAAAAGATGAGTTCAATAAGCGGCAGCGTGCTACCCAAATGGTGGCACAGAGAGCATTGGCAAGGTTGAAGGACTCATGGAGGATCATCGAAGGTGTGATGTGGAGACCTGACAAACACAGATTGCCAAGGATTATTCTCGTTTGCTGCTTGCTTCATAACATTGTTATCGACATGGAAGATGAAGTGCTGGATCACCTGCCTTTGTCTCACAATCATGATGACTCGGCTTACCACCAACAGATTTGTGGAACTCTTGACATAAATGGTGTTCATCTCAGAGATAAGCTGTCTCTCTACTTGTCTGGAAGGATGCCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

455

Amino Acids

51.76

Weight (kDa)

6.44

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_tran	PF04827	218 - 410	9e-10	Plant transposon protein
DDE_Tnp_4	PF13359	236 - 402	8.8e-28	DDE superfamily endonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55350
fragaria_vesca	FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_7g21532 FvH4_7g21532
malus_domestica	MD01G1122200.v1.1 MD03G1099600.v1.1 MD07G1191700.v1.1 MD11G1113800.v1.1
prunus_persica	Prupe.2G229800_v2.0.a1 Prupe.6G084600_v2.0.a1
pyrus_communis	pycom01g14910 pycom03g08200 pycom07g18110 pycom11g09580
rosa_chinensis	RchiOBHm_Chr1g0365861 RchiOBHm_Chr5g0062911
rosa_laevigata	RLG00000027385 RLG00000035589
rosa_multiflora	Rmu_co8388519.1_g000001 Rmu_sc0006406.1_g000002 Rmu_sc0010322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017720 Rroxscaffold_4G00290790 Rroxscaffold_5G00340940
rosa_rugosa	Rorug05G0352700
rosa_samantha	Rh1AG334100 Rh1BG294700 Rh1CG311400 Rh1DG327100 Rh5AG413700 Rh5BG427900 Rh5CG451500 Rh5DG441600
rosa_wichuraiana	Rw1G029640 Rw2G024510 Rw5G038870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	627, 1251
Acc36I	ACCTGC	2 cut(s)	627, 1251
AccB7I	CCANNNNNTGG	1 cut(s)	1087
AciI	CCGC	1 cut(s)	1066
AclWI	GGATC	2 cut(s)	1136, 1245
AcoI	YGGCCR	1 cut(s)	848
AcsI	RAATTY	1 cut(s)	665
AcuI	CTGAAG	4 cut(s)	259, 308, 657, 726
AfaI	GTAC	1 cut(s)	457
AfiI	CCNNNNNNNGG	5 cut(s)	14, 338, 1025, 1026, 1087
AflII	CTTAAG	1 cut(s)	20
AgsI	TTSAA	8 cut(s)	151, 239, 356, 633, 664, 925, 1060, 1114
AhlI	ACTAGT	1 cut(s)	520
AjnI	CCWGG	2 cut(s)	575, 850
AjuI	GAANNNNNNNTTGG	4 cut(s)	854, 886, 960, 992
AloI	GAACNNNNNNTCC	2 cut(s)	809, 841
AluBI	AGCT	6 cut(s)	267, 485, 507, 740, 943, 1333
AluI	AGCT	6 cut(s)	267, 485, 507, 740, 943, 1333
Alw21I	GWGCWC	2 cut(s)	509, 945
Alw26I	GTCTC	6 cut(s)	57, 333, 570, 1144, 1257, 1341
AlwI	GGATC	2 cut(s)	1136, 1245
AoxI	GGCC	4 cut(s)	626, 801, 848, 1001
ApeKI	GCWGC	2 cut(s)	1069, 1191
ApoI	RAATTY	1 cut(s)	665
AspS9I	GGNCC	4 cut(s)	5, 84, 101, 811
AsuC2I	CCSGG	2 cut(s)	815, 830
AsuHPI	GGTGA	5 cut(s)	524, 545, 605, 832, 1232
AvaII	GGWCC	4 cut(s)	5, 84, 101, 811
BalI	TGGCCA	1 cut(s)	850
BanII	GRGCYC	2 cut(s)	509, 945
BauI	CACGAG	1 cut(s)	773
BbsI	GAAGAC	4 cut(s)	187, 314, 321, 505
Bbv12I	GWGCWC	2 cut(s)	509, 945
BbvI	GCAGC	2 cut(s)	1081, 1178
BccI	CCATC	2 cut(s)	415, 840
BceAI	ACGGC	2 cut(s)	545, 1016
BciT130I	CCWGG	2 cut(s)	577, 852
BclI	TGATCA	1 cut(s)	475
BcnI	CCSGG	2 cut(s)	815, 830
BcoDI	GTCTC	6 cut(s)	57, 333, 570, 1144, 1257, 1341
BcuI	ACTAGT	1 cut(s)	520
BfaI	CTAG	1 cut(s)	521
BfrI	CTTAAG	1 cut(s)	20
BfuAI	ACCTGC	2 cut(s)	627, 1251
BisI	GCNGC	3 cut(s)	1067, 1070, 1192
BlsI	GCNGC	3 cut(s)	1068, 1071, 1193
Bme1390I	CCNGG	4 cut(s)	577, 815, 830, 852
Bme18I	GGWCC	4 cut(s)	5, 84, 101, 811
BmgT120I	GGNCC	4 cut(s)	5, 84, 101, 811
BmiI	GGNNCC	4 cut(s)	6, 85, 813, 827
BmrFI	CCNGG	4 cut(s)	577, 815, 830, 852
BmsI	GCATC	1 cut(s)	1347
BpiI	GAAGAC	4 cut(s)	187, 314, 321, 505
BpmI	CTGGAG	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	552
BpuMI	CCSGG	2 cut(s)	815, 830
BsaI	GGTCTC	1 cut(s)	1144
BsaJI	CCNNGG	3 cut(s)	594, 851, 1172
BsaWI	WCCGGW	1 cut(s)	842
Bsc4I	CCNNNNNNNGG	5 cut(s)	14, 338, 1025, 1026, 1087
Bse1I	ACTGG	3 cut(s)	182, 214, 872
Bse3DI	GCAATG	1 cut(s)	629
BseBI	CCWGG	2 cut(s)	577, 852
BseDI	CCNNGG	3 cut(s)	594, 851, 1172
BseGI	GGATG	3 cut(s)	124, 851, 1362
BseLI	CCNNNNNNNGG	5 cut(s)	14, 338, 1025, 1026, 1087
BseMI	GCAATG	1 cut(s)	629
BseMII	CTCAG	3 cut(s)	102, 494, 1336
BseNI	ACTGG	3 cut(s)	182, 214, 872
BseXI	GCAGC	2 cut(s)	1081, 1178
BshFI	GGCC	4 cut(s)	628, 803, 850, 1003
BsiHKAI	GWGCWC	2 cut(s)	509, 945
BsiSI	CCGG	3 cut(s)	815, 829, 843
BslFI	GGGAC	2 cut(s)	621, 845
BslI	CCNNNNNNNGG	5 cut(s)	14, 338, 1025, 1026, 1087
BsmAI	GTCTC	6 cut(s)	57, 333, 570, 1144, 1257, 1341
BsmFI	GGGAC	2 cut(s)	621, 845
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	4 cut(s)	628, 803, 850, 1003
Bso31I	GGTCTC	1 cut(s)	1144
Bsp1286I	GDGCHC	2 cut(s)	509, 945
Bsp143I	GATC	5 cut(s)	61, 475, 769, 1128, 1237
Bsp19I	CCATGG	1 cut(s)	594
BspACI	CCGC	1 cut(s)	1066
BspANI	GGCC	4 cut(s)	628, 803, 850, 1003
BspCNI	CTCAG	3 cut(s)	101, 495, 1335
BspHI	TCATGA	4 cut(s)	55, 723, 895, 1261
BspLI	GGNNCC	4 cut(s)	6, 85, 813, 827
BspMI	ACCTGC	2 cut(s)	627, 1251
BspPI	GGATC	2 cut(s)	1136, 1245
BspTI	CTTAAG	1 cut(s)	20
BspTNI	GGTCTC	1 cut(s)	1144
BsrDI	GCAATG	1 cut(s)	629
BsrI	ACTGG	3 cut(s)	182, 214, 872
BssECI	CCNNGG	3 cut(s)	594, 851, 1172
BssMI	GATC	5 cut(s)	61, 475, 769, 1128, 1237
BssSI	CACGAG	1 cut(s)	773
BssT1I	CCWWGG	2 cut(s)	594, 1172
Bst2BI	CACGAG	1 cut(s)	773
Bst2UI	CCWGG	2 cut(s)	577, 852
Bst4CI	ACNGT	2 cut(s)	155, 320
Bst6I	CTCTTC	1 cut(s)	20
BstAFI	CTTAAG	1 cut(s)	20
BstC8I	GCNNGC	3 cut(s)	801, 1074, 1196
BstDEI	CTNAG	6 cut(s)	88, 268, 426, 503, 888, 1322
BstDSI	CCRYGG	1 cut(s)	594
BstF5I	GGATG	3 cut(s)	124, 851, 1362
BstKTI	GATC	5 cut(s)	64, 478, 772, 1131, 1240
BstMAI	GTCTC	6 cut(s)	57, 333, 570, 1144, 1257, 1341
BstMBI	GATC	5 cut(s)	61, 475, 769, 1128, 1237
BstMWI	GCNNNNNNNGC	3 cut(s)	431, 647, 1097
BstNI	CCWGG	2 cut(s)	577, 852
BstNSI	RCATGY	1 cut(s)	312
BstSCI	CCNGG	4 cut(s)	575, 813, 828, 850
BstV1I	GCAGC	2 cut(s)	1081, 1178
BstV2I	GAAGAC	4 cut(s)	187, 314, 321, 505
BsuRI	GGCC	4 cut(s)	628, 803, 850, 1003
BtgI	CCRYGG	1 cut(s)	594
BtsCI	GGATG	3 cut(s)	124, 851, 1362
BtsIMutI	CAGTG	2 cut(s)	160, 189
BveI	ACCTGC	2 cut(s)	627, 1251
Cac8I	GCNNGC	3 cut(s)	801, 1074, 1196
CciI	TCATGA	4 cut(s)	55, 723, 895, 1261
Cfr13I	GGNCC	4 cut(s)	5, 84, 101, 811
Csp6I	GTAC	1 cut(s)	456
CviQI	GTAC	1 cut(s)	456
DdeI	CTNAG	6 cut(s)	88, 268, 426, 503, 888, 1322
DpnI	GATC	5 cut(s)	63, 477, 771, 1130, 1239
DpnII	GATC	5 cut(s)	61, 475, 769, 1128, 1237
EaeI	YGGCCR	1 cut(s)	848
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	507, 943
Eco130I	CCWWGG	2 cut(s)	594, 1172
Eco24I	GRGCYC	2 cut(s)	509, 945
Eco31I	GGTCTC	1 cut(s)	1144
Eco47I	GGWCC	4 cut(s)	5, 84, 101, 811
Eco53kI	GAGCTC	2 cut(s)	507, 943
Eco57I	CTGAAG	4 cut(s)	259, 308, 657, 726
EcoICRI	GAGCTC	2 cut(s)	507, 943
EcoO109I	RGGNCCY	3 cut(s)	5, 84, 101
EcoRII	CCWGG	2 cut(s)	575, 850
EcoT14I	CCWWGG	2 cut(s)	594, 1172
EcoT22I	ATGCAT	1 cut(s)	763
EcoT38I	GRGCYC	2 cut(s)	509, 945
ErhI	CCWWGG	2 cut(s)	594, 1172
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FaqI	GGGAC	2 cut(s)	621, 845
FauNDI	CATATG	1 cut(s)	395
FbaI	TGATCA	1 cut(s)	475
Fnu4HI	GCNGC	3 cut(s)	1067, 1070, 1192
FokI	GGATG	2 cut(s)	131, 858
FriOI	GRGCYC	2 cut(s)	509, 945
Fsp4HI	GCNGC	3 cut(s)	1067, 1070, 1192
FspBI	CTAG	1 cut(s)	521
GluI	GCNGC	3 cut(s)	1067, 1070, 1192
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	4 cut(s)	628, 803, 850, 1003
HapII	CCGG	3 cut(s)	815, 829, 843
HinfI	GANTC	6 cut(s)	135, 515, 536, 983, 1118, 1268
HpaII	CCGG	3 cut(s)	815, 829, 843
HphI	GGTGA	5 cut(s)	524, 545, 605, 832, 1232
Hpy166II	GTNNAC	2 cut(s)	734, 811
Hpy188I	TCNGA	5 cut(s)	91, 672, 745, 882, 1325
Hpy188III	TCNNGA	8 cut(s)	56, 375, 724, 773, 896, 1262, 1301, 1350
Hpy8I	GTNNAC	2 cut(s)	734, 811
HpyAV	CCTTC	9 cut(s)	28, 88, 92, 639, 856, 1019, 1108, 1130, 1347
HpyCH4III	ACNGT	2 cut(s)	155, 320
HpyCH4V	TGCA	5 cut(s)	308, 622, 679, 761, 799
HpyF10VI	GCNNNNNNNGC	3 cut(s)	431, 647, 1097
HpyF3I	CTNAG	6 cut(s)	88, 268, 426, 503, 888, 1322
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	5 cut(s)	61, 475, 769, 1128, 1237
Lsp1109I	GCAGC	2 cut(s)	1081, 1178
LweI	GCATC	1 cut(s)	1347
MaeI	CTAG	1 cut(s)	521
MaeIII	GTNAC	4 cut(s)	241, 278, 516, 571
MalI	GATC	5 cut(s)	63, 477, 771, 1130, 1239
MboI	GATC	5 cut(s)	61, 475, 769, 1128, 1237
MhlI	GDGCHC	2 cut(s)	509, 945
MlsI	TGGCCA	1 cut(s)	850
MluCI	AATT	5 cut(s)	659, 665, 691, 781, 975
MluNI	TGGCCA	1 cut(s)	850
MlyI	GAGTC	3 cut(s)	524, 1112, 1262
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	6 cut(s)	6, 97, 297, 816, 912, 1119
Mox20I	TGGCCA	1 cut(s)	850
Mph1103I	ATGCAT	1 cut(s)	763
MscI	TGGCCA	1 cut(s)	850
MseI	TTAA	6 cut(s)	21, 344, 366, 447, 494, 1366
MslI	CAYNNNNRTG	1 cut(s)	1260
Msp20I	TGGCCA	1 cut(s)	850
MspCI	CTTAAG	1 cut(s)	20
MspI	CCGG	3 cut(s)	815, 829, 843
MspR9I	CCNGG	4 cut(s)	577, 815, 830, 852
Mva1269I	GAATGC	1 cut(s)	232
MvaI	CCWGG	2 cut(s)	577, 852
MwoI	GCNNNNNNNGC	3 cut(s)	431, 647, 1097
NciI	CCSGG	2 cut(s)	815, 830
NcoI	CCATGG	1 cut(s)	594
NdeI	CATATG	1 cut(s)	395
NdeII	GATC	5 cut(s)	61, 475, 769, 1128, 1237
NlaIV	GGNNCC	4 cut(s)	6, 85, 813, 827
NmeAIII	GCCGAG	1 cut(s)	1250
NmuCI	GTSAC	2 cut(s)	516, 571
NsiI	ATGCAT	1 cut(s)	763
NspI	RCATGY	1 cut(s)	312
PagI	TCATGA	4 cut(s)	55, 723, 895, 1261
PaqCI	CACCTGC	2 cut(s)	627, 1251
PctI	GAATGC	1 cut(s)	232
PfeI	GAWTC	3 cut(s)	135, 536, 983
PflMI	CCANNNNNTGG	1 cut(s)	1087
PfoI	TCCNGGA	1 cut(s)	828
PkrI	GCNGC	3 cut(s)	1068, 1071, 1193
PleI	GAGTC	3 cut(s)	523, 1112, 1262
PpsI	GAGTC	3 cut(s)	523, 1112, 1262
PpuMI	RGGWCCY	3 cut(s)	5, 84, 101
Psp124BI	GAGCTC	2 cut(s)	509, 945
Psp5II	RGGWCCY	3 cut(s)	5, 84, 101
Psp6I	CCWGG	2 cut(s)	575, 850
PspGI	CCWGG	2 cut(s)	575, 850
PspN4I	GGNNCC	4 cut(s)	6, 85, 813, 827
PspPI	GGNCC	4 cut(s)	5, 84, 101, 811
PspPPI	RGGWCCY	3 cut(s)	5, 84, 101
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
RseI	CAYNNNNRTG	1 cut(s)	1260
SacI	GAGCTC	2 cut(s)	509, 945
SaqAI	TTAA	6 cut(s)	21, 344, 366, 447, 494, 1366
SatI	GCNGC	3 cut(s)	1067, 1070, 1192
Sau3AI	GATC	5 cut(s)	61, 475, 769, 1128, 1237
Sau96I	GGNCC	4 cut(s)	5, 84, 101, 811
SchI	GAGTC	3 cut(s)	524, 1112, 1262
ScrFI	CCNGG	4 cut(s)	577, 815, 830, 852
SduI	GDGCHC	2 cut(s)	509, 945
SfaNI	GCATC	1 cut(s)	1347
SinI	GGWCC	4 cut(s)	5, 84, 101, 811
SmiMI	CAYNNNNRTG	1 cut(s)	1260
SmlI	CTYRAG	2 cut(s)	20, 567
SmoI	CTYRAG	2 cut(s)	20, 567
SpeI	ACTAGT	1 cut(s)	520
Sse9I	AATT	5 cut(s)	659, 665, 691, 781, 975
SsiI	CCGC	1 cut(s)	1066
SspMI	CTAG	1 cut(s)	521
SstI	GAGCTC	2 cut(s)	509, 945
StyD4I	CCNGG	4 cut(s)	575, 813, 828, 850
StyI	CCWWGG	2 cut(s)	594, 1172
TaaI	ACNGT	2 cut(s)	155, 320
TaqI	TCGA	3 cut(s)	768, 1134, 1215
TasI	AATT	5 cut(s)	659, 665, 691, 781, 975
TauI	GCSGC	1 cut(s)	1069
TfiI	GAWTC	3 cut(s)	135, 536, 983
Tru1I	TTAA	6 cut(s)	21, 344, 366, 447, 494, 1366
Tru9I	TTAA	6 cut(s)	21, 344, 366, 447, 494, 1366
TscAI	CASTG	2 cut(s)	160, 189
TseFI	GTSAC	2 cut(s)	516, 571
TseI	GCWGC	2 cut(s)	1069, 1191
Tsp45I	GTSAC	2 cut(s)	516, 571
TspDTI	ATGAA	9 cut(s)	72, 528, 875, 884, 912, 1038, 1190, 1242, 1307
TspRI	CASTG	2 cut(s)	160, 189
Van91I	CCANNNNNTGG	1 cut(s)	1087
Vha464I	CTTAAG	1 cut(s)	20
VpaK11BI	GGWCC	4 cut(s)	5, 84, 101, 811
XapI	RAATTY	1 cut(s)	665
XceI	RCATGY	1 cut(s)	312
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1289
XspI	CTAG	1 cut(s)	521
Zsp2I	ATGCAT	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.