Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002733

Physical Location & Seq

Genomic Coordinates Reverse (-)

5695207 .. 5698780

Gene Structure 3574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G084600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGGTCCTGTGAGGGGGGTCAGAAAGAGAAAGAAGGCAGATAAGAAGCCTGAAGAAAATGCTTCTGGTTCTGGGTCATCAGAGAAGGAAGGTCCTGTGGATTGGTGGGATGAATTCTCCAAGAGAATCAATGGTCTTCAGTCTCCAGCAAAGGGTTTAGACAAGTTTGAATCTGTTTTTAAGGTTTCTAGGAAAACCTTTGACTACATATGTTCACTTGTGAATGAAGATATGCTGGCTAAATCTGCACATTTTGTGTTTACAAATGGTAAGCCCTTGTGTTTGTACGATCAAGTAGCTGTAGCTTTAAGAAGACTTAGCTCTGGTGAGTCACTAGTGACAATTGGCGATGCATTTGGGGTGAACCACTCAACTGTGTCTCAAGTGACCTGGCGTTTTGTGGAAGCCATGGAAGAAAGAGGACTTCACCACCTGCAATGGCCCTCCACTGAAGCAGAAATGTCAGAAATTAAATCCAAATTTCAGAAAATACGAGGCTTTCCTAATTGTTCTGGCGTTGTTGATACTACCCACATCATGATGTGTTTGCCTGCTTCGGACCCCACAAGTGATGCGTGGCTCGATCAAGAGAAGAATCACAGCATGGTCTTACAAGCCATTGTGGACCCTGACATGAGGTTTCGGGACATAGTAACTGGATGGCCAGGAAAGATGAAGGACTGGACAGTCTTTCAGAGTTCAAATTTTTATGAACTCTGTGATAGAGGTGAGAGGTTGAATGGGAAAATATTAGACCTCTCCAAAGAATTGGATATACGGGAGTACATAATTGGGGATTTGGGCTTTCCTTTACTGCCCTATCTTGTAACCCCCTACGAAGGAAAAGAACTTCCAGAGCCAAAAGCTGAGTTCAATAAGAGGCATTATGCTACCCGGATGGTTGCACATAGAGCATTGGCAAGGTTGAAGGACAAGTGGAGGATCATTCAAGGAGTGATGTGGAGACCCGACAAACATAGATTGCCAAGGATCATTCTTGTTTGCTGCTTGCTTCATAACATTGTTATCGATATGGAAGATGAGGTGCAAGATGAAATGCCTTTGTCTCACAAGCATGACTCAGCTTACCACCAACAGATTTGTGGAACTGTCGACGTAAACGGTGTTCATCTGAGAGATAAGCTGTCTCTCTACTTATCTGGAAGGATGCCAATGCCACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

395

Amino Acids

45.03

Weight (kDa)

7.22

Isoelectric Point (pI)

40.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55350
fragaria_vesca	FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_3g35001 FvH4_7g21532 FvH4_7g21532
malus_domestica	MD01G1122200.v1.1 MD03G1099600.v1.1 MD07G1191700.v1.1 MD11G1113800.v1.1
prunus_persica	Prupe.2G229800_v2.0.a1 Prupe.6G084600_v2.0.a1
pyrus_communis	pycom01g14910 pycom03g08200 pycom07g18110 pycom11g09580
rosa_chinensis	RchiOBHm_Chr1g0365861 RchiOBHm_Chr5g0062911
rosa_laevigata	RLG00000027385 RLG00000035589
rosa_multiflora	Rmu_co8388519.1_g000001 Rmu_sc0006406.1_g000002 Rmu_sc0010322.1_g000001
rosa_roxburghii	Rroxscaffold_1G00017720 Rroxscaffold_4G00290790 Rroxscaffold_5G00340940
rosa_rugosa	Rorug05G0352700
rosa_samantha	Rh1AG334100 Rh1BG294700 Rh1CG311400 Rh1DG327100 Rh5AG413700 Rh5BG427900 Rh5CG451500 Rh5DG441600
rosa_wichuraiana	Rw1G029640 Rw2G024510 Rw5G038870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	441
AasI	GACNNNNNNGTC	1 cut(s)	686
Acc36I	ACCTGC	1 cut(s)	441
AccI	GTMKAC	1 cut(s)	1113
AclWI	GGATC	2 cut(s)	950, 998
AcoI	YGGCCR	1 cut(s)	662
AcsI	RAATTY	3 cut(s)	113, 479, 703
AcuI	CTGAAG	3 cut(s)	72, 122, 471
AfaI	GTAC	2 cut(s)	287, 785
AfiI	CCNNNNNNNGG	3 cut(s)	14, 152, 839
AgsI	TTSAA	6 cut(s)	170, 702, 739, 874, 928, 950
AhlI	ACTAGT	1 cut(s)	334
AjnI	CCWGG	2 cut(s)	389, 664
AluBI	AGCT	6 cut(s)	299, 305, 321, 866, 1085, 1144
AluI	AGCT	6 cut(s)	299, 305, 321, 866, 1085, 1144
Alw26I	GTCTC	5 cut(s)	147, 384, 958, 1071, 1152
AlwI	GGATC	2 cut(s)	950, 998
AoxI	GGCC	2 cut(s)	440, 662
ApeKI	GCWGC	1 cut(s)	1005
ApoI	RAATTY	3 cut(s)	113, 479, 703
AspS9I	GGNCC	5 cut(s)	5, 92, 441, 559, 625
AsuC2I	CCSGG	1 cut(s)	895
AsuHPI	GGTGA	4 cut(s)	338, 373, 419, 740
AvaII	GGWCC	4 cut(s)	5, 92, 559, 625
BalI	TGGCCA	1 cut(s)	664
BbsI	GAAGAC	2 cut(s)	128, 319
BbvI	GCAGC	1 cut(s)	992
BccI	CCATC	2 cut(s)	654, 892
BciT130I	CCWGG	2 cut(s)	391, 666
BcnI	CCSGG	1 cut(s)	895
BcoDI	GTCTC	5 cut(s)	147, 384, 958, 1071, 1152
BcuI	ACTAGT	1 cut(s)	334
BfaI	CTAG	2 cut(s)	189, 335
BfmI	CTRYAG	1 cut(s)	300
BfuAI	ACCTGC	1 cut(s)	441
BisI	GCNGC	1 cut(s)	1006
BlsI	GCNGC	1 cut(s)	1007
Bme1390I	CCNGG	3 cut(s)	391, 666, 895
Bme18I	GGWCC	4 cut(s)	5, 92, 559, 625
BmgT120I	GGNCC	5 cut(s)	5, 92, 441, 559, 625
BmiI	GGNNCC	3 cut(s)	6, 561, 627
BmrFI	CCNGG	3 cut(s)	391, 666, 895
BmsI	GCATC	3 cut(s)	340, 562, 1158
BpiI	GAAGAC	2 cut(s)	128, 319
BpmI	CTGGAG	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	366
BpuMI	CCSGG	1 cut(s)	895
Bsa29I	ATCGAT	1 cut(s)	1029
BsaI	GGTCTC	1 cut(s)	958
BsaJI	CCNNGG	2 cut(s)	408, 986
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 152, 839
Bse1I	ACTGG	2 cut(s)	661, 686
Bse3DI	GCAATG	1 cut(s)	443
BseBI	CCWGG	2 cut(s)	391, 666
BseCI	ATCGAT	1 cut(s)	1029
BseDI	CCNNGG	2 cut(s)	408, 986
BseGI	GGATG	4 cut(s)	115, 665, 903, 1173
BseLI	CCNNNNNNNGG	3 cut(s)	14, 152, 839
BseMI	GCAATG	1 cut(s)	443
BseMII	CTCAG	3 cut(s)	858, 1095, 1124
BseNI	ACTGG	2 cut(s)	661, 686
BseXI	GCAGC	1 cut(s)	992
BsgI	GTGCAG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	442, 664
BshVI	ATCGAT	1 cut(s)	1029
BsiSI	CCGG	1 cut(s)	895
BslFI	GGGAC	1 cut(s)	659
BslI	CCNNNNNNNGG	3 cut(s)	14, 152, 839
BsmAI	GTCTC	5 cut(s)	147, 384, 958, 1071, 1152
BsmFI	GGGAC	1 cut(s)	659
BsnI	GGCC	2 cut(s)	442, 664
Bso31I	GGTCTC	1 cut(s)	958
Bsp143I	GATC	4 cut(s)	289, 583, 942, 990
Bsp19I	CCATGG	1 cut(s)	408
BspANI	GGCC	2 cut(s)	442, 664
BspCNI	CTCAG	3 cut(s)	859, 1094, 1125
BspDI	ATCGAT	1 cut(s)	1029
BspHI	TCATGA	1 cut(s)	537
BspLI	GGNNCC	3 cut(s)	6, 561, 627
BspMI	ACCTGC	1 cut(s)	441
BspPI	GGATC	2 cut(s)	950, 998
BspTNI	GGTCTC	1 cut(s)	958
BsrDI	GCAATG	1 cut(s)	443
BsrI	ACTGG	2 cut(s)	661, 686
BssECI	CCNNGG	2 cut(s)	408, 986
BssMI	GATC	4 cut(s)	289, 583, 942, 990
BssT1I	CCWWGG	2 cut(s)	408, 986
Bst2UI	CCWGG	2 cut(s)	391, 666
Bst4CI	ACNGT	4 cut(s)	376, 688, 1111, 1124
BstC8I	GCNNGC	3 cut(s)	237, 552, 1010
BstDEI	CTNAG	4 cut(s)	317, 867, 1081, 1133
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	4 cut(s)	115, 665, 903, 1173
BstKTI	GATC	4 cut(s)	292, 586, 945, 993
BstMAI	GTCTC	5 cut(s)	147, 384, 958, 1071, 1152
BstMBI	GATC	4 cut(s)	289, 583, 942, 990
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 911
BstNI	CCWGG	2 cut(s)	391, 666
BstSCI	CCNGG	3 cut(s)	389, 664, 893
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	992
BstV2I	GAAGAC	2 cut(s)	128, 319
BstXI	CCANNNNNNTGG	1 cut(s)	769
Bsu15I	ATCGAT	1 cut(s)	1029
BsuRI	GGCC	2 cut(s)	442, 664
BsuTUI	ATCGAT	1 cut(s)	1029
BtgI	CCRYGG	1 cut(s)	408
BtgZI	GCGATG	1 cut(s)	363
BtsCI	GGATG	4 cut(s)	115, 665, 903, 1173
BtsIMutI	CAGTG	1 cut(s)	447
BveI	ACCTGC	1 cut(s)	441
Cac8I	GCNNGC	3 cut(s)	237, 552, 1010
CciI	TCATGA	1 cut(s)	537
Cfr13I	GGNCC	5 cut(s)	5, 92, 441, 559, 625
ClaI	ATCGAT	1 cut(s)	1029
Csp6I	GTAC	2 cut(s)	286, 784
CviAII	CATG	5 cut(s)	409, 538, 604, 634, 1076
CviQI	GTAC	2 cut(s)	286, 784
DdeI	CTNAG	4 cut(s)	317, 867, 1081, 1133
DpnI	GATC	4 cut(s)	291, 585, 944, 992
DpnII	GATC	4 cut(s)	289, 583, 942, 990
DrdI	GACNNNNNNGTC	1 cut(s)	686
DseDI	GACNNNNNNGTC	1 cut(s)	686
EaeI	YGGCCR	1 cut(s)	662
Eco130I	CCWWGG	2 cut(s)	408, 986
Eco31I	GGTCTC	1 cut(s)	958
Eco47I	GGWCC	4 cut(s)	5, 92, 559, 625
Eco57I	CTGAAG	3 cut(s)	72, 122, 471
EcoO109I	RGGNCCY	2 cut(s)	5, 92
EcoRI	GAATTC	1 cut(s)	113
EcoRII	CCWGG	2 cut(s)	389, 664
EcoT14I	CCWWGG	2 cut(s)	408, 986
EcoT22I	ATGCAT	1 cut(s)	355
ErhI	CCWWGG	2 cut(s)	408, 986
FaeI	CATG	5 cut(s)	412, 541, 607, 637, 1079
FaqI	GGGAC	1 cut(s)	659
FatI	CATG	5 cut(s)	408, 537, 603, 633, 1075
FauNDI	CATATG	1 cut(s)	209
FblI	GTMKAC	1 cut(s)	1113
Fnu4HI	GCNGC	1 cut(s)	1006
FokI	GGATG	4 cut(s)	122, 672, 910, 1180
Fsp4HI	GCNGC	1 cut(s)	1006
FspBI	CTAG	2 cut(s)	189, 335
GluI	GCNGC	1 cut(s)	1006
GsuI	CTGGAG	1 cut(s)	129
HaeIII	GGCC	2 cut(s)	442, 664
HapII	CCGG	1 cut(s)	895
Hin1II	CATG	5 cut(s)	412, 541, 607, 637, 1079
HincII	GTYRAC	1 cut(s)	1114
HindII	GTYRAC	1 cut(s)	1114
HinfI	GANTC	5 cut(s)	126, 170, 329, 595, 1079
HpaII	CCGG	1 cut(s)	895
HphI	GGTGA	4 cut(s)	338, 373, 419, 740
Hpy166II	GTNNAC	6 cut(s)	215, 261, 364, 625, 1114, 1120
Hpy188I	TCNGA	7 cut(s)	23, 82, 466, 486, 559, 696, 1134
Hpy188III	TCNNGA	5 cut(s)	538, 587, 644, 854, 1161
Hpy8I	GTNNAC	6 cut(s)	215, 261, 364, 625, 1114, 1120
Hpy99I	CGWCG	1 cut(s)	1118
HpyAV	CCTTC	7 cut(s)	28, 79, 83, 670, 833, 922, 1158
HpyCH4III	ACNGT	4 cut(s)	376, 688, 1111, 1124
HpyCH4IV	ACGT	1 cut(s)	1116
HpyCH4V	TGCA	5 cut(s)	248, 353, 436, 905, 1048
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 911
HpyF3I	CTNAG	4 cut(s)	317, 867, 1081, 1133
HpySE526I	ACGT	1 cut(s)	1116
Hsp92II	CATG	5 cut(s)	412, 541, 607, 637, 1079
Kzo9I	GATC	4 cut(s)	289, 583, 942, 990
Lsp1109I	GCAGC	1 cut(s)	992
LweI	GCATC	3 cut(s)	340, 562, 1158
MaeI	CTAG	2 cut(s)	189, 335
MaeII	ACGT	1 cut(s)	1116
MaeIII	GTNAC	5 cut(s)	330, 337, 385, 652, 826
MalI	GATC	4 cut(s)	291, 585, 944, 992
MboI	GATC	4 cut(s)	289, 583, 942, 990
MboII	GAAGA	7 cut(s)	65, 128, 239, 324, 425, 604, 1049
MfeI	CAATTG	1 cut(s)	342
MlsI	TGGCCA	1 cut(s)	664
MluCI	AATT	8 cut(s)	113, 342, 468, 479, 505, 703, 767, 789
MluNI	TGGCCA	1 cut(s)	664
MlyI	GAGTC	2 cut(s)	338, 1073
Mox20I	TGGCCA	1 cut(s)	664
Mph1103I	ATGCAT	1 cut(s)	355
MscI	TGGCCA	1 cut(s)	664
MseI	TTAA	3 cut(s)	180, 308, 471
MslI	CAYNNNNRTG	2 cut(s)	539, 1074
Msp20I	TGGCCA	1 cut(s)	664
MspI	CCGG	1 cut(s)	895
MspR9I	CCNGG	3 cut(s)	391, 666, 895
MunI	CAATTG	1 cut(s)	342
MvaI	CCWGG	2 cut(s)	391, 666
MwoI	GCNNNNNNNGC	2 cut(s)	245, 911
NciI	CCSGG	1 cut(s)	895
NcoI	CCATGG	1 cut(s)	408
NdeI	CATATG	1 cut(s)	209
NdeII	GATC	4 cut(s)	289, 583, 942, 990
NlaIII	CATG	5 cut(s)	412, 541, 607, 637, 1079
NlaIV	GGNNCC	3 cut(s)	6, 561, 627
NmuCI	GTSAC	3 cut(s)	330, 337, 385
NsiI	ATGCAT	1 cut(s)	355
PagI	TCATGA	1 cut(s)	537
PaqCI	CACCTGC	1 cut(s)	441
PfeI	GAWTC	3 cut(s)	126, 170, 595
PkrI	GCNGC	1 cut(s)	1007
PleI	GAGTC	2 cut(s)	337, 1073
PpsI	GAGTC	2 cut(s)	337, 1073
PpuMI	RGGWCCY	2 cut(s)	5, 92
Psp5II	RGGWCCY	2 cut(s)	5, 92
Psp6I	CCWGG	2 cut(s)	389, 664
PspGI	CCWGG	2 cut(s)	389, 664
PspN4I	GGNNCC	3 cut(s)	6, 561, 627
PspPI	GGNCC	5 cut(s)	5, 92, 441, 559, 625
PspPPI	RGGWCCY	2 cut(s)	5, 92
PsrI	GAACNNNNNNTAC	2 cut(s)	1110, 1142
RsaI	GTAC	2 cut(s)	287, 785
RsaNI	GTAC	2 cut(s)	286, 784
RseI	CAYNNNNRTG	2 cut(s)	539, 1074
SalI	GTCGAC	1 cut(s)	1112
SaqAI	TTAA	3 cut(s)	180, 308, 471
SatI	GCNGC	1 cut(s)	1006
Sau3AI	GATC	4 cut(s)	289, 583, 942, 990
Sau96I	GGNCC	5 cut(s)	5, 92, 441, 559, 625
SchI	GAGTC	2 cut(s)	338, 1073
ScrFI	CCNGG	3 cut(s)	391, 666, 895
SfaNI	GCATC	3 cut(s)	340, 562, 1158
SfcI	CTRYAG	1 cut(s)	300
SinI	GGWCC	4 cut(s)	5, 92, 559, 625
SmiMI	CAYNNNNRTG	2 cut(s)	539, 1074
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
SpeI	ACTAGT	1 cut(s)	334
Sse9I	AATT	8 cut(s)	113, 342, 468, 479, 505, 703, 767, 789
SspI	AATATT	1 cut(s)	750
SspMI	CTAG	2 cut(s)	189, 335
StyD4I	CCNGG	3 cut(s)	389, 664, 893
StyI	CCWWGG	2 cut(s)	408, 986
TaaI	ACNGT	4 cut(s)	376, 688, 1111, 1124
TaiI	ACGT	1 cut(s)	1119
TaqI	TCGA	3 cut(s)	582, 1029, 1113
TasI	AATT	8 cut(s)	113, 342, 468, 479, 505, 703, 767, 789
TatI	WGTACW	1 cut(s)	783
TfiI	GAWTC	3 cut(s)	126, 170, 595
Tru1I	TTAA	3 cut(s)	180, 308, 471
Tru9I	TTAA	3 cut(s)	180, 308, 471
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	3 cut(s)	330, 337, 385
TseI	GCWGC	1 cut(s)	1005
Tsp45I	GTSAC	3 cut(s)	330, 337, 385
TspDTI	ATGAA	7 cut(s)	126, 240, 689, 726, 1004, 1068, 1118
TspRI	CASTG	1 cut(s)	454
VpaK11BI	GGWCC	4 cut(s)	5, 92, 559, 625
XapI	RAATTY	3 cut(s)	113, 479, 703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1100
XmiI	GTMKAC	1 cut(s)	1113
XspI	CTAG	2 cut(s)	189, 335
Zsp2I	ATGCAT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.