AT3G56160

sodium metabolite cotransporter BASS4, chloroplastic

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
20837365 .. 20841734
4370 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G56160.2

Sequence Viewer

Length: 1311 bp
ATGGCGATAGCTAGTACCCTGGCTTCAACCCAAAACCCCTTTCTATGTCTCCGTCAACCACCGTCTCCGGGGAACCGCTCCGTCGTCTTCCGTCGCTGTCAAGACCCCTGTGGTAGACGATGGATTTCCAGATCCATTAGAGCATGCCAACCTTCCGACAAGGTCTCTGGTCAATTTCCATTCGATTTTATGTATTCTTCTATGCTTATTCCAAGTTCGTGTGGAGAATGGAATCGGATTCATCTTGGTGGTGACGGAGGCATTTCAGCTTCAGCTCAAAGATTATATTTTGGCAAGGAATTGCTGAGTTTTGCTTCAGATAATTTCTTGCCTCTAGCTCTTGTTAGTGGAGTGGGGTTGGGCTTTGCAAATCCGACTCTAGGCTGTCTTGCAGACAAGTACTCTTTCACTAAGATCAGCACATGCGGGATATTTATTATATCAGGGTTGACTTTACGTACCGAAGCGATTGGTGCTGCTGTCAAAGGGTGGCCTCTTGGACTCTTTGGGCTAATCTCTATTTTGTTGCTCACTCCATCCTTCTCAAGGCTAATTATGTTGGTCCAACTCCAACCTCGTGAACTTGTTACAGGGCTGGGTATATTTTGCTGTATGCCAACCACCTTATCAAGTGGTGTTGCCCTTACTCACCTTGCTGGTGGTAATGCTGCTCTTGCTCTTGCTGTGACAGTGGCATCTAACTTATTAGGAATTTTAACTATTCCATTTTGGGTATCAAGATACATAGCTGGGGGAGTAGGGGTTTCGTTTCCTACTGACCAACTATTCAGAAGTCTTATAGTTACTCTGTTAATTCCTTTAATCATTGGCAAGGTTATTCGAGAATCATTCAAAGGTTTCGCAAACTTTGTTGACAATAACCGTAAACTCTTTTCGAAAATCAACGCAATCTGCCTCAGTTTGGTGCCATGGATCCAAGTGAGCAGGTCAAGATCACTGCTACTATCCGTTCAACCTAAGGTTTTCCTTGCAGCAGTTGGCATTGGAATATTGCTGCATCTTTCTCTACTAGCATTCAATGCTGTTTCAATCCGCATCCTCTCCGGTCTTACAGGTGGTAGCAAGAGCTCCAAGGAAAACAGCACTGCAGTTTTGCTCGTTTCAAGCCAGAAAACATTACCGGTAATGGTGGCGGTAGTAGAGCAATTAGGAGGTGCATTTGGTGAGACAGGGCTATTGGTTCTTCCTTGTGTAGCTGCACACCTGAACCAGATCATGATTGATTCAGTTCTTGTCAACTTATGGCTCCGGAGAGGAAAAGATACTTCGACTAAAGTAAAGACAGCTTGA

Protein Analysis

436

Amino Acids

46.53

Weight (kDa)

9.91

Isoelectric Point (pI)

37.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBF_like PF13593 83 - 349 6.4e-41 SBF-like CPA transporter family (DUF4137)
SBF PF01758 122 - 284 2.2e-13 Sodium Bile acid symporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 936
AccB1I GGYRCC 1 cut(s) 925
AccBSI CCGCTC 1 cut(s) 78
AccI GTMKAC 1 cut(s) 115
AccIII TCCGGA 1 cut(s) 1269
AciI CCGC 4 cut(s) 76, 426, 1054, 1154
AclWI GGATC 3 cut(s) 126, 928, 941
AcsI RAATTY 1 cut(s) 711
AcuI CTGAAG 2 cut(s) 255, 300
AfaI GTAC 3 cut(s) 16, 401, 460
AfiI CCNNNNNNNGG 4 cut(s) 68, 380, 546, 922
AgeI ACCGGT 1 cut(s) 1141
AgsI TTSAA 6 cut(s) 27, 853, 974, 1039, 1050, 1125
AjnI CCWGG 1 cut(s) 18
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AluBI AGCT 8 cut(s) 11, 269, 275, 338, 749, 1089, 1217, 1307
AluI AGCT 8 cut(s) 11, 269, 275, 338, 749, 1089, 1217, 1307
Alw21I GWGCWC 1 cut(s) 1091
Alw26I GTCTC 4 cut(s) 53, 69, 169, 1181
AlwI GGATC 3 cut(s) 126, 928, 941
Aor13HI TCCGGA 1 cut(s) 1269
AoxI GGCC 1 cut(s) 491
ApeKI GCWGC 5 cut(s) 476, 668, 992, 1015, 1217
ApoI RAATTY 1 cut(s) 711
AsiGI ACCGGT 1 cut(s) 1141
AspS9I GGNCC 1 cut(s) 562
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 3 cut(s) 263, 641, 1196
AsuII TTCGAA 1 cut(s) 896
AvaII GGWCC 1 cut(s) 562
AxyI CCTNAGG 1 cut(s) 978
BamHI GGATCC 1 cut(s) 933
BanI GGYRCC 1 cut(s) 925
BanII GRGCYC 1 cut(s) 1091
BarI GAAGNNNNNNTAC 2 cut(s) 7, 39
BauI CACGAG 1 cut(s) 576
BbsI GAAGAC 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 1091
BbvI GCAGC 5 cut(s) 463, 655, 1002, 1004, 1204
BccI CCATC 2 cut(s) 114, 544
BciT130I CCWGG 1 cut(s) 20
BcnI CCSGG 1 cut(s) 69
BcoDI GTCTC 4 cut(s) 53, 69, 169, 1181
BfaI CTAG 4 cut(s) 12, 335, 380, 1031
BfmI CTRYAG 1 cut(s) 1107
BfuAI ACCTGC 1 cut(s) 936
BisI GCNGC 5 cut(s) 477, 669, 993, 1016, 1218
BlsI GCNGC 5 cut(s) 478, 670, 994, 1017, 1219
BmcAI AGTACT 1 cut(s) 401
Bme1390I CCNGG 2 cut(s) 20, 69
Bme18I GGWCC 1 cut(s) 562
BmgT120I GGNCC 1 cut(s) 562
BmiI GGNNCC 4 cut(s) 74, 927, 935, 1268
BmrFI CCNGG 2 cut(s) 20, 69
BmsI GCATC 3 cut(s) 704, 1027, 1065
BpiI GAAGAC 1 cut(s) 79
Bpu14I TTCGAA 1 cut(s) 896
BpuEI CTTGAG 1 cut(s) 529
BpuMI CCSGG 1 cut(s) 69
BsaAI YACGTR 1 cut(s) 458
BsaI GGTCTC 1 cut(s) 169
BsaJI CCNNGG 4 cut(s) 18, 68, 929, 1092
BsaWI WCCGGW 3 cut(s) 1064, 1141, 1269
BsaXI ACNNNNNCTCC 2 cut(s) 747, 777
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 380, 546, 922
Bse118I RCCGGY 1 cut(s) 1141
Bse21I CCTNAGG 1 cut(s) 978
BseAI TCCGGA 1 cut(s) 1269
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 4 cut(s) 18, 68, 929, 1092
BseGI GGATG 2 cut(s) 536, 1056
BseLI CCNNNNNNNGG 4 cut(s) 68, 380, 546, 922
BseMII CTCAG 2 cut(s) 296, 931
BseXI GCAGC 5 cut(s) 463, 655, 1002, 1004, 1204
BseYI CCCAGC 2 cut(s) 595, 749
BsgI GTGCAG 1 cut(s) 1203
BshFI GGCC 1 cut(s) 493
BshNI GGYRCC 1 cut(s) 925
BshTI ACCGGT 1 cut(s) 1141
BsiHKAI GWGCWC 1 cut(s) 1091
BsiSI CCGG 4 cut(s) 68, 1065, 1142, 1270
BslI CCNNNNNNNGG 4 cut(s) 68, 380, 546, 922
BsmAI GTCTC 4 cut(s) 53, 69, 169, 1181
BsmBI CGTCTC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 1034
BsnI GGCC 1 cut(s) 493
Bso31I GGTCTC 1 cut(s) 169
Bsp119I TTCGAA 1 cut(s) 896
Bsp1286I GDGCHC 1 cut(s) 1091
Bsp13I TCCGGA 1 cut(s) 1269
Bsp143I GATC 5 cut(s) 131, 414, 933, 953, 1233
Bsp19I CCATGG 1 cut(s) 929
BspACI CCGC 4 cut(s) 76, 426, 1054, 1154
BspANI GGCC 1 cut(s) 493
BspCNI CTCAG 2 cut(s) 297, 930
BspEI TCCGGA 1 cut(s) 1269
BspHI TCATGA 1 cut(s) 1236
BspLI GGNNCC 4 cut(s) 74, 927, 935, 1268
BspMAI CTGCAG 1 cut(s) 1111
BspMI ACCTGC 1 cut(s) 936
BspPI GGATC 3 cut(s) 126, 928, 941
BspT104I TTCGAA 1 cut(s) 896
BspT107I GGYRCC 1 cut(s) 925
BspTNI GGTCTC 1 cut(s) 169
BsrBI CCGCTC 1 cut(s) 78
BsrFI RCCGGY 1 cut(s) 1141
BssAI RCCGGY 1 cut(s) 1141
BssECI CCNNGG 4 cut(s) 18, 68, 929, 1092
BssMI GATC 5 cut(s) 131, 414, 933, 953, 1233
BssSI CACGAG 1 cut(s) 576
BssT1I CCWWGG 2 cut(s) 929, 1092
Bst2BI CACGAG 1 cut(s) 576
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 3 cut(s) 63, 691, 884
BstAPI GCANNNNNTGC 1 cut(s) 1040
BstBAI YACGTR 1 cut(s) 458
BstBI TTCGAA 1 cut(s) 896
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 4 cut(s) 305, 411, 917, 978
BstDSI CCRYGG 1 cut(s) 929
BstENI CCTNNNNNAGG 1 cut(s) 544
BstF5I GGATG 2 cut(s) 536, 1056
BstKTI GATC 5 cut(s) 134, 417, 936, 956, 1236
BstMAI GTCTC 4 cut(s) 53, 69, 169, 1181
BstMBI GATC 5 cut(s) 131, 414, 933, 953, 1233
BstMWI GCNNNNNNNGC 3 cut(s) 473, 674, 1040
BstNI CCWGG 1 cut(s) 20
BstNSI RCATGY 2 cut(s) 147, 426
BstSCI CCNGG 2 cut(s) 18, 67
BstSFI CTRYAG 1 cut(s) 1107
BstSNI TACGTA 1 cut(s) 458
BstV1I GCAGC 5 cut(s) 463, 655, 1002, 1004, 1204
BstV2I GAAGAC 1 cut(s) 79
BstX2I RGATCY 2 cut(s) 131, 933
BstYI RGATCY 2 cut(s) 131, 933
Bsu36I CCTNAGG 1 cut(s) 978
BsuRI GGCC 1 cut(s) 493
BtgI CCRYGG 1 cut(s) 929
BtsCI GGATG 2 cut(s) 536, 1056
BtsI GCAGTG 2 cut(s) 956, 1104
BtsIMutI CAGTG 3 cut(s) 696, 956, 1104
BveI ACCTGC 1 cut(s) 936
Cac8I GCNNGC 1 cut(s) 145
CciI TCATGA 1 cut(s) 1236
Cfr10I RCCGGY 1 cut(s) 1141
Cfr13I GGNCC 1 cut(s) 562
Csp6I GTAC 3 cut(s) 15, 400, 459
CspAI ACCGGT 1 cut(s) 1141
CviAII CATG 4 cut(s) 144, 423, 930, 1237
CviQI GTAC 3 cut(s) 15, 400, 459
DdeI CTNAG 4 cut(s) 305, 411, 917, 978
DpnI GATC 5 cut(s) 133, 416, 935, 955, 1235
DpnII GATC 5 cut(s) 131, 414, 933, 953, 1233
Ecl136II GAGCTC 1 cut(s) 1089
Eco105I TACGTA 1 cut(s) 458
Eco130I CCWWGG 2 cut(s) 929, 1092
Eco24I GRGCYC 1 cut(s) 1091
Eco31I GGTCTC 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 562
Eco53kI GAGCTC 1 cut(s) 1089
Eco57I CTGAAG 2 cut(s) 255, 300
Eco81I CCTNAGG 1 cut(s) 978
EcoICRI GAGCTC 1 cut(s) 1089
EcoNI CCTNNNNNAGG 1 cut(s) 544
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 2 cut(s) 929, 1092
EcoT38I GRGCYC 1 cut(s) 1091
ErhI CCWWGG 2 cut(s) 929, 1092
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 4 cut(s) 147, 426, 933, 1240
FatI CATG 4 cut(s) 143, 422, 929, 1236
FauI CCCGC 1 cut(s) 419
FblI GTMKAC 1 cut(s) 115
Fnu4HI GCNGC 5 cut(s) 477, 669, 993, 1016, 1218
FokI GGATG 2 cut(s) 523, 1043
FriOI GRGCYC 1 cut(s) 1091
Fsp4HI GCNGC 5 cut(s) 477, 669, 993, 1016, 1218
FspBI CTAG 4 cut(s) 12, 335, 380, 1031
GluI GCNGC 5 cut(s) 477, 669, 993, 1016, 1218
GsaI CCCAGC 2 cut(s) 599, 753
HaeIII GGCC 1 cut(s) 493
HapII CCGG 4 cut(s) 68, 1065, 1142, 1270
Hin1II CATG 4 cut(s) 147, 426, 933, 1240
HincII GTYRAC 4 cut(s) 56, 450, 874, 1258
HindII GTYRAC 4 cut(s) 56, 450, 874, 1258
HinfI GANTC 6 cut(s) 232, 238, 376, 501, 845, 1244
HpaII CCGG 4 cut(s) 68, 1065, 1142, 1270
HphI GGTGA 3 cut(s) 263, 641, 1196
Hpy166II GTNNAC 7 cut(s) 56, 116, 450, 581, 874, 887, 1258
Hpy188I TCNGA 5 cut(s) 157, 237, 319, 375, 791
Hpy188III TCNNGA 8 cut(s) 101, 129, 578, 738, 842, 951, 1237, 1270
Hpy8I GTNNAC 7 cut(s) 56, 116, 450, 581, 874, 887, 1258
Hpy99I CGWCG 2 cut(s) 86, 96
HpyAV CCTTC 2 cut(s) 162, 550
HpyCH4III ACNGT 3 cut(s) 63, 691, 884
HpyCH4IV ACGT 1 cut(s) 457
HpyCH4V TGCA 7 cut(s) 368, 392, 992, 1018, 1109, 1178, 1220
HpyF10VI GCNNNNNNNGC 3 cut(s) 473, 674, 1040
HpyF3I CTNAG 4 cut(s) 305, 411, 917, 978
HpySE526I ACGT 1 cut(s) 457
Hsp92II CATG 4 cut(s) 147, 426, 933, 1240
Kpn2I TCCGGA 1 cut(s) 1269
Kzo9I GATC 5 cut(s) 131, 414, 933, 953, 1233
LmnI GCTCC 3 cut(s) 83, 1094, 1272
Lsp1109I GCAGC 5 cut(s) 463, 655, 1002, 1004, 1204
LweI GCATC 3 cut(s) 704, 1027, 1065
MaeI CTAG 4 cut(s) 12, 335, 380, 1031
MaeII ACGT 1 cut(s) 457
MaeIII GTNAC 4 cut(s) 251, 586, 685, 802
MalI GATC 5 cut(s) 133, 416, 935, 955, 1235
MbiI CCGCTC 1 cut(s) 78
MboI GATC 5 cut(s) 131, 414, 933, 953, 1233
MboII GAAGA 3 cut(s) 79, 189, 1196
MflI RGATCY 2 cut(s) 131, 933
MhlI GDGCHC 1 cut(s) 1091
MluCI AATT 7 cut(s) 173, 299, 322, 552, 711, 813, 1166
MlyI GAGTC 2 cut(s) 370, 495
MmeI TCCRAC 4 cut(s) 180, 398, 589, 595
MnlI CCTC 8 cut(s) 251, 342, 504, 585, 926, 1070, 1166, 1268
MroI TCCGGA 1 cut(s) 1269
MseI TTAA 3 cut(s) 716, 812, 821
MslI CAYNNNNRTG 1 cut(s) 246
MspI CCGG 4 cut(s) 68, 1065, 1142, 1270
MspR9I CCNGG 2 cut(s) 20, 69
Mva1269I GAATGC 1 cut(s) 1034
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 3 cut(s) 473, 674, 1040
NciI CCSGG 1 cut(s) 69
NcoI CCATGG 1 cut(s) 929
NdeII GATC 5 cut(s) 131, 414, 933, 953, 1233
NlaIII CATG 4 cut(s) 147, 426, 933, 1240
NlaIV GGNNCC 4 cut(s) 74, 927, 935, 1268
NmuCI GTSAC 2 cut(s) 251, 685
NspI RCATGY 2 cut(s) 147, 426
NspV TTCGAA 1 cut(s) 896
PaeI GCATGC 1 cut(s) 147
PagI TCATGA 1 cut(s) 1236
PctI GAATGC 1 cut(s) 1034
PfeI GAWTC 4 cut(s) 232, 238, 845, 1244
PflFI GACNNNGTC 1 cut(s) 161
PinAI ACCGGT 1 cut(s) 1141
PkrI GCNGC 5 cut(s) 478, 670, 994, 1017, 1219
PleI GAGTC 2 cut(s) 370, 495
PpsI GAGTC 2 cut(s) 370, 495
Ppu21I YACGTR 1 cut(s) 458
Psp124BI GAGCTC 1 cut(s) 1091
Psp6I CCWGG 1 cut(s) 18
PspFI CCCAGC 2 cut(s) 595, 749
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 4 cut(s) 74, 927, 935, 1268
PspPI GGNCC 1 cut(s) 562
PstI CTGCAG 1 cut(s) 1111
PsuI RGATCY 2 cut(s) 131, 933
PsyI GACNNNGTC 1 cut(s) 161
RsaI GTAC 3 cut(s) 16, 401, 460
RsaNI GTAC 3 cut(s) 15, 400, 459
RseI CAYNNNNRTG 1 cut(s) 246
SacI GAGCTC 1 cut(s) 1091
SaqAI TTAA 3 cut(s) 716, 812, 821
SatI GCNGC 5 cut(s) 477, 669, 993, 1016, 1218
Sau3AI GATC 5 cut(s) 131, 414, 933, 953, 1233
Sau96I GGNCC 1 cut(s) 562
ScaI AGTACT 1 cut(s) 401
SchI GAGTC 2 cut(s) 370, 495
ScrFI CCNGG 2 cut(s) 20, 69
SduI GDGCHC 1 cut(s) 1091
SfaNI GCATC 3 cut(s) 704, 1027, 1065
SfcI CTRYAG 1 cut(s) 1107
SfuI TTCGAA 1 cut(s) 896
SinI GGWCC 1 cut(s) 562
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 544
SmoI CTYRAG 1 cut(s) 544
SnaBI TACGTA 1 cut(s) 458
SphI GCATGC 1 cut(s) 147
Sse9I AATT 7 cut(s) 173, 299, 322, 552, 711, 813, 1166
SsiI CCGC 4 cut(s) 76, 426, 1054, 1154
SspI AATATT 1 cut(s) 1011
SspMI CTAG 4 cut(s) 12, 335, 380, 1031
SstI GAGCTC 1 cut(s) 1091
StyD4I CCNGG 2 cut(s) 18, 67
StyI CCWWGG 2 cut(s) 929, 1092
TaaI ACNGT 3 cut(s) 63, 691, 884
TaiI ACGT 1 cut(s) 460
TaqI TCGA 4 cut(s) 183, 841, 896, 1289
TasI AATT 7 cut(s) 173, 299, 322, 552, 711, 813, 1166
TatI WGTACW 1 cut(s) 399
TfiI GAWTC 4 cut(s) 232, 238, 845, 1244
Tru1I TTAA 3 cut(s) 716, 812, 821
Tru9I TTAA 3 cut(s) 716, 812, 821
TscAI CASTG 3 cut(s) 696, 963, 1111
TseFI GTSAC 2 cut(s) 251, 685
TseI GCWGC 5 cut(s) 476, 668, 992, 1015, 1217
Tsp45I GTSAC 2 cut(s) 251, 685
TspDTI ATGAA 1 cut(s) 230
TspGWI ACGGA 5 cut(s) 41, 70, 80, 270, 958
TspRI CASTG 3 cut(s) 696, 963, 1111
Tth111I GACNNNGTC 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 562
XagI CCTNNNNNAGG 1 cut(s) 544
XapI RAATTY 1 cut(s) 711
XceI RCATGY 2 cut(s) 147, 426
XmiI GTMKAC 1 cut(s) 115
XspI CTAG 4 cut(s) 12, 335, 380, 1031
ZrmI AGTACT 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.