Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003648

Physical Location & Seq

Genomic Coordinates Reverse (-)

12128410 .. 12137470

Gene Structure 9061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G079400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGCGGGAACCATCCATGCCCTAATTCTCACACCTCGACCCGCCAAATTGTTGCCGTTTGCTCACCGAATCCCACATTTTCCGTCCAAACATGCGGCATTCCGTTTCAATTTTCAACTTAGCCGCTCCATTTCGAAACCCGTCAAAGCTTGCCAACAGTCCGATCAGATAGATGGTGATGGAAAGAAAGCTCATAACGATTCTGGTTCAGTGAAGGGCTTGAGTTGGGCTAAACCATTGTCGCATTTCGTGGCGAATAATTTTCTTCCCTTAGCTCTTGTTGGTGGAGTAGCTTTAGGGATGGCAAATCCTAGTCTAGGTTGTCTGGCTGATACGTATTCTTTGTCAAAATTTAGCACGTTTGGGATTTTTATCATCTCAGGGTTGACCTTGCACACTGGAGAAATTGTTGCAGCTGCACAAGCATGGCCTGCCGGAATCTTCGGGCTAGTCTCCATTCTATTATTTACTCCATATTTTTCGAGGATAATATTGCAACTGCAGCTCCAACCTCCAGAGTTTGTTAGAGGGCTTGCAATATTTTGTTGTATGCCAACTACACTATCAAGTGGAGTGGCACTTGCTCAGCTTGCGGGGGCCAATTCTGCTCTTGCTCTTGCCATTACTGTGATCAGTAACCTTTTAGGAATTTTGATTGTCCCATTTTCTATATCAAAATACATAGCTGGTGGAGTTGGTGTATCTGTTCCAACTAAGCAACTGTTCAAAAGTCTTGTTCTAACATTGTTGATCCCCCTAATCTTGGGGAAGATTTTTCGAGAATCCTTCAGAGGTGTTGCAGACTTTGTTGATCAAAACCGTAAGCTTTTTTCTAAGATCAGTGCAGTCTTCCTCAGTTTAGTGCCATGGATACAAGTTAGTAGGTCGAGGTCACTGCTGTTGATGGTTAAGCCTCCAGTTTTTCTTGTGGCTATTGGAATGGGAGTACTTCTGCACCTCATCTTGTTAGCCTTTAATGCTCTTGCTCTAAAGAGCATCTCAGCTGTCTCTGGTGGCAGTCGATCAGTGTTTTCCAAGAAAGAAAATGCCAATGCTGTTCTCCTTGTTGCGAGCCAGAAAACTCTGCCTGTAATGGTGGCTGTAGTGGAGCAACTTGGTGGTGCACTGGGTGAATCTGGTTTGCTTGTTGTTCCTTGTGTTGCAGCACACTTAAATCAGATTATTATTGACTCGTTTCTTGTTAACTTCTGGCTTCGGAAGGACCTCTCGACTGACAGTACAAAGGTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF_like

Protein Analysis

418

Amino Acids

44.48

Weight (kDa)

10.02

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56160 AT3G56160 AT3G56160 AT3G56160 AT3G56160
fragaria_vesca	FvH4_7g05590 FvH4_7g05870
malus_domestica	MD02G1255900.v1.1 MD02G1256100.v1.1 MD02G1256200.v1.1
prunus_persica	Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1
pyrus_communis	pycom02g21680
rosa_chinensis	RchiOBHm_Chr1g0332541 RchiOBHm_Chr1g0332551 RchiOBHm_Chr1g0332571
rosa_laevigata	RLG00000029655 RLG00000029664
rosa_multiflora	Rmu_sc0004413.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318140
rosa_rugosa	Rorug01G0101700
rosa_samantha	Rh1AG126400 Rh1BG096200 Rh1CG120300 Rh1DG130500 Rh2AG156400 Rh4CG087600
rosa_wichuraiana	Rw0G002580 Rw1G010190 Rw1G010690 Rw6G006930 Rw6G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	126
AciI	CCGC	5 cut(s)	5, 42, 95, 124, 593
AclWI	GGATC	1 cut(s)	745
AcsI	RAATTY	2 cut(s)	350, 648
AcuI	CTGAAG	1 cut(s)	772
AdeI	CACNNNGTG	1 cut(s)	1130
AfaI	GTAC	2 cut(s)	948, 1240
AfiI	CCNNNNNNNGG	2 cut(s)	317, 763
AgsI	TTSAA	3 cut(s)	109, 116, 727
Alw21I	GWGCWC	1 cut(s)	1126
Alw26I	GTCTC	2 cut(s)	457, 1012
Alw44I	GTGCAC	1 cut(s)	1122
AlwI	GGATC	1 cut(s)	745
AoxI	GGCC	2 cut(s)	428, 597
ApaLI	GTGCAC	1 cut(s)	1122
ApeKI	GCWGC	4 cut(s)	413, 416, 502, 1163
ApoI	RAATTY	2 cut(s)	350, 648
AspS9I	GGNCC	2 cut(s)	597, 1222
AsuHPI	GGTGA	3 cut(s)	56, 188, 1142
AsuII	TTCGAA	1 cut(s)	134
AvaII	GGWCC	1 cut(s)	1222
BaeGI	GKGCMC	1 cut(s)	1126
BbsI	GAAGAC	1 cut(s)	841
Bbv12I	GWGCWC	1 cut(s)	1126
BbvI	GCAGC	4 cut(s)	403, 425, 514, 1175
BccI	CCATC	5 cut(s)	20, 167, 173, 295, 898
BceAI	ACGGC	1 cut(s)	40
BcgI	CGANNNNNNTGC	2 cut(s)	877, 911
BciVI	GTATCC	1 cut(s)	864
BclI	TGATCA	2 cut(s)	630, 811
BcoDI	GTCTC	2 cut(s)	457, 1012
BfaI	CTAG	3 cut(s)	312, 317, 449
BfmI	CTRYAG	2 cut(s)	500, 1101
BfuI	GTATCC	1 cut(s)	864
BisI	GCNGC	6 cut(s)	96, 124, 414, 417, 503, 1164
BlpI	GCTNAGC	1 cut(s)	585
BlsI	GCNGC	6 cut(s)	97, 125, 415, 418, 504, 1165
BmcAI	AGTACT	1 cut(s)	948
Bme18I	GGWCC	1 cut(s)	1222
BmgT120I	GGNCC	2 cut(s)	597, 1222
BmiI	GGNNCC	2 cut(s)	10, 598
BmrI	ACTGGG	1 cut(s)	1136
BmsI	GCATC	1 cut(s)	1005
BmuI	ACTGGG	1 cut(s)	1136
BpiI	GAAGAC	1 cut(s)	841
BpmI	CTGGAG	3 cut(s)	420, 498, 900
Bpu10I	CCTNAGC	1 cut(s)	271
Bpu1102I	GCTNAGC	1 cut(s)	585
Bpu14I	TTCGAA	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	241
BsaAI	YACGTR	1 cut(s)	336
BsaBI	GATNNNNATC	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	866
BsaXI	ACNNNNNCTCC	6 cut(s)	393, 423, 489, 519, 684, 714
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 763
Bse1I	ACTGG	3 cut(s)	403, 917, 1131
Bse8I	GATNNNNATC	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	866
BseGI	GGATG	2 cut(s)	12, 306
BseJI	GATNNNNATC	1 cut(s)	371
BseLI	CCNNNNNNNGG	2 cut(s)	317, 763
BseMII	CTCAG	4 cut(s)	393, 599, 868, 1014
BseNI	ACTGG	3 cut(s)	403, 917, 1131
BseSI	GKGCMC	1 cut(s)	1126
BseXI	GCAGC	4 cut(s)	403, 425, 514, 1175
BsgI	GTGCAG	3 cut(s)	402, 864, 938
BshFI	GGCC	2 cut(s)	430, 599
BsiHKAI	GWGCWC	1 cut(s)	1126
BsiSI	CCGG	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	644
BslI	CCNNNNNNNGG	2 cut(s)	317, 763
BsmAI	GTCTC	2 cut(s)	457, 1012
BsmFI	GGGAC	1 cut(s)	644
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	430, 599
Bsp119I	TTCGAA	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	1126
Bsp143I	GATC	6 cut(s)	163, 630, 750, 811, 837, 1022
Bsp1720I	GCTNAGC	1 cut(s)	585
Bsp19I	CCATGG	1 cut(s)	866
BspACI	CCGC	5 cut(s)	5, 42, 95, 124, 593
BspANI	GGCC	2 cut(s)	430, 599
BspCNI	CTCAG	4 cut(s)	392, 598, 867, 1013
BspLI	GGNNCC	2 cut(s)	10, 598
BspMAI	CTGCAG	1 cut(s)	504
BspPI	GGATC	1 cut(s)	745
BspT104I	TTCGAA	1 cut(s)	134
BsrBI	CCGCTC	1 cut(s)	126
BsrI	ACTGG	3 cut(s)	403, 917, 1131
BssECI	CCNNGG	1 cut(s)	866
BssMI	GATC	6 cut(s)	163, 630, 750, 811, 837, 1022
BssT1I	CCWWGG	1 cut(s)	866
Bst4CI	ACNGT	5 cut(s)	159, 628, 723, 821, 1238
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstBAI	YACGTR	1 cut(s)	336
BstBI	TTCGAA	1 cut(s)	134
BstC8I	GCNNGC	5 cut(s)	151, 432, 534, 591, 1072
BstDEI	CTNAG	8 cut(s)	119, 271, 379, 585, 714, 834, 854, 1000
BstDSI	CCRYGG	1 cut(s)	866
BstENI	CCTNNNNNAGG	1 cut(s)	315
BstF5I	GGATG	2 cut(s)	12, 306
BstKTI	GATC	6 cut(s)	166, 633, 753, 814, 840, 1025
BstMAI	GTCTC	2 cut(s)	457, 1012
BstMBI	GATC	6 cut(s)	163, 630, 750, 811, 837, 1022
BstMWI	GCNNNNNNNGC	6 cut(s)	422, 431, 502, 590, 605, 977
BstNSI	RCATGY	1 cut(s)	95
BstSFI	CTRYAG	2 cut(s)	500, 1101
BstSLI	GKGCMC	1 cut(s)	1126
BstSNI	TACGTA	1 cut(s)	336
BstV1I	GCAGC	4 cut(s)	403, 425, 514, 1175
BstV2I	GAAGAC	1 cut(s)	841
BsuI	GTATCC	1 cut(s)	864
BsuRI	GGCC	2 cut(s)	430, 599
BtgI	CCRYGG	1 cut(s)	866
BtsCI	GGATG	2 cut(s)	12, 306
BtsI	GCAGTG	1 cut(s)	893
BtsIMutI	CAGTG	6 cut(s)	216, 396, 847, 893, 1032, 1124
Cac8I	GCNNGC	5 cut(s)	151, 432, 534, 591, 1072
Cfr13I	GGNCC	2 cut(s)	597, 1222
Csp6I	GTAC	2 cut(s)	947, 1239
CspCI	CAANNNNNGTGG	2 cut(s)	555, 590
CviAII	CATG	4 cut(s)	17, 92, 426, 867
CviQI	GTAC	2 cut(s)	947, 1239
DdeI	CTNAG	8 cut(s)	119, 271, 379, 585, 714, 834, 854, 1000
DpnI	GATC	6 cut(s)	165, 632, 752, 813, 839, 1024
DpnII	GATC	6 cut(s)	163, 630, 750, 811, 837, 1022
DraIII	CACNNNGTG	1 cut(s)	1130
Eco105I	TACGTA	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	866
Eco47I	GGWCC	1 cut(s)	1222
Eco57I	CTGAAG	1 cut(s)	772
EcoNI	CCTNNNNNAGG	1 cut(s)	315
EcoO109I	RGGNCCY	1 cut(s)	1222
EcoT14I	CCWWGG	1 cut(s)	866
ErhI	CCWWGG	1 cut(s)	866
FaeI	CATG	4 cut(s)	20, 95, 429, 870
FaqI	GGGAC	1 cut(s)	644
FatI	CATG	4 cut(s)	16, 91, 425, 866
FauI	CCCGC	2 cut(s)	49, 586
FbaI	TGATCA	2 cut(s)	630, 811
Fnu4HI	GCNGC	6 cut(s)	96, 124, 414, 417, 503, 1164
FokI	GGATG	1 cut(s)	313
Fsp4HI	GCNGC	6 cut(s)	96, 124, 414, 417, 503, 1164
FspBI	CTAG	3 cut(s)	312, 317, 449
GluI	GCNGC	6 cut(s)	96, 124, 414, 417, 503, 1164
GsuI	CTGGAG	3 cut(s)	420, 498, 900
HaeIII	GGCC	2 cut(s)	430, 599
HapII	CCGG	1 cut(s)	435
Hin1II	CATG	4 cut(s)	20, 95, 429, 870
HincII	GTYRAC	2 cut(s)	387, 1204
HindII	GTYRAC	2 cut(s)	387, 1204
HindIII	AAGCTT	2 cut(s)	147, 824
HinfI	GANTC	6 cut(s)	69, 200, 438, 782, 1133, 1190
HpaI	GTTAAC	1 cut(s)	1204
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	3 cut(s)	56, 188, 1142
Hpy166II	GTNNAC	3 cut(s)	387, 1124, 1204
Hpy188I	TCNGA	5 cut(s)	163, 168, 791, 1179, 1218
Hpy188III	TCNNGA	3 cut(s)	515, 779, 1228
Hpy8I	GTNNAC	3 cut(s)	387, 1124, 1204
HpyAV	CCTTC	3 cut(s)	208, 796, 1213
HpyCH4III	ACNGT	5 cut(s)	159, 628, 723, 821, 1238
HpyCH4IV	ACGT	2 cut(s)	335, 359
HpyF10VI	GCNNNNNNNGC	6 cut(s)	422, 431, 502, 590, 605, 977
HpyF3I	CTNAG	8 cut(s)	119, 271, 379, 585, 714, 834, 854, 1000
HpySE526I	ACGT	2 cut(s)	335, 359
Hsp92II	CATG	4 cut(s)	20, 95, 429, 870
Ksp22I	TGATCA	2 cut(s)	630, 811
KspAI	GTTAAC	1 cut(s)	1204
Kzo9I	GATC	6 cut(s)	163, 630, 750, 811, 837, 1022
LmnI	GCTCC	3 cut(s)	131, 510, 1108
Lsp1109I	GCAGC	4 cut(s)	403, 425, 514, 1175
LweI	GCATC	1 cut(s)	1005
MaeI	CTAG	3 cut(s)	312, 317, 449
MaeII	ACGT	2 cut(s)	335, 359
MaeIII	GTNAC	2 cut(s)	635, 891
MalI	GATC	6 cut(s)	165, 632, 752, 813, 839, 1024
MbiI	CCGCTC	1 cut(s)	126
MboI	GATC	6 cut(s)	163, 630, 750, 811, 837, 1022
MboII	GAAGA	4 cut(s)	257, 433, 781, 841
MhlI	GDGCHC	1 cut(s)	1126
MluCI	AATT	8 cut(s)	24, 47, 109, 259, 350, 405, 601, 648
MlyI	GAGTC	1 cut(s)	1184
MmeI	TCCRAC	2 cut(s)	532, 734
MseI	TTAA	4 cut(s)	909, 975, 1172, 1203
MslI	CAYNNNNRTG	2 cut(s)	424, 626
MspA1I	CMGCKG	2 cut(s)	416, 1004
MspI	CCGG	1 cut(s)	435
Mva1269I	GAATGC	1 cut(s)	98
MwoI	GCNNNNNNNGC	6 cut(s)	422, 431, 502, 590, 605, 977
NcoI	CCATGG	1 cut(s)	866
NdeII	GATC	6 cut(s)	163, 630, 750, 811, 837, 1022
NlaIII	CATG	4 cut(s)	20, 95, 429, 870
NlaIV	GGNNCC	2 cut(s)	10, 598
NmuCI	GTSAC	1 cut(s)	891
NspI	RCATGY	1 cut(s)	95
NspV	TTCGAA	1 cut(s)	134
PctI	GAATGC	1 cut(s)	98
PfeI	GAWTC	5 cut(s)	69, 200, 438, 782, 1133
PkrI	GCNGC	6 cut(s)	97, 125, 415, 418, 504, 1165
PleI	GAGTC	1 cut(s)	1184
PpsI	GAGTC	1 cut(s)	1184
Ppu21I	YACGTR	1 cut(s)	336
PpuMI	RGGWCCY	1 cut(s)	1222
Psp5II	RGGWCCY	1 cut(s)	1222
PspN4I	GGNNCC	2 cut(s)	10, 598
PspPI	GGNCC	2 cut(s)	597, 1222
PspPPI	RGGWCCY	1 cut(s)	1222
PstI	CTGCAG	1 cut(s)	504
PvuII	CAGCTG	2 cut(s)	416, 1004
RsaI	GTAC	2 cut(s)	948, 1240
RsaNI	GTAC	2 cut(s)	947, 1239
RseI	CAYNNNNRTG	2 cut(s)	424, 626
SaqAI	TTAA	4 cut(s)	909, 975, 1172, 1203
SatI	GCNGC	6 cut(s)	96, 124, 414, 417, 503, 1164
Sau3AI	GATC	6 cut(s)	163, 630, 750, 811, 837, 1022
Sau96I	GGNCC	2 cut(s)	597, 1222
ScaI	AGTACT	1 cut(s)	948
SchI	GAGTC	1 cut(s)	1184
SduI	GDGCHC	1 cut(s)	1126
SfaNI	GCATC	1 cut(s)	1005
SfcI	CTRYAG	2 cut(s)	500, 1101
SfuI	TTCGAA	1 cut(s)	134
SinI	GGWCC	1 cut(s)	1222
SmiMI	CAYNNNNRTG	2 cut(s)	424, 626
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
SnaBI	TACGTA	1 cut(s)	336
Sse9I	AATT	8 cut(s)	24, 47, 109, 259, 350, 405, 601, 648
SsiI	CCGC	5 cut(s)	5, 42, 95, 124, 593
SspI	AATATT	2 cut(s)	492, 540
SspMI	CTAG	3 cut(s)	312, 317, 449
StyI	CCWWGG	1 cut(s)	866
TaaI	ACNGT	5 cut(s)	159, 628, 723, 821, 1238
TaiI	ACGT	2 cut(s)	338, 362
TaqI	TCGA	7 cut(s)	37, 134, 482, 778, 887, 1021, 1229
TasI	AATT	8 cut(s)	24, 47, 109, 259, 350, 405, 601, 648
TatI	WGTACW	2 cut(s)	946, 1238
TauI	GCSGC	2 cut(s)	98, 126
TfiI	GAWTC	5 cut(s)	69, 200, 438, 782, 1133
Tru1I	TTAA	4 cut(s)	909, 975, 1172, 1203
Tru9I	TTAA	4 cut(s)	909, 975, 1172, 1203
TscAI	CASTG	6 cut(s)	216, 403, 847, 900, 1032, 1131
TseFI	GTSAC	1 cut(s)	891
TseI	GCWGC	4 cut(s)	413, 416, 502, 1163
Tsp45I	GTSAC	1 cut(s)	891
TspGWI	ACGGA	2 cut(s)	72, 92
TspRI	CASTG	6 cut(s)	216, 403, 847, 900, 1032, 1131
VneI	GTGCAC	1 cut(s)	1122
VpaK11BI	GGWCC	1 cut(s)	1222
XagI	CCTNNNNNAGG	1 cut(s)	315
XapI	RAATTY	2 cut(s)	350, 648
XceI	RCATGY	1 cut(s)	95
XspI	CTAG	3 cut(s)	312, 317, 449
ZrmI	AGTACT	1 cut(s)	948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.