Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003648

Physical Location & Seq

Genomic Coordinates Forward (+)

5856198 .. 5863469

Gene Structure 7272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGCGGGAATCATCCTCCAAACCCTACATCTCACTCCTCCGCCCACCAAAATCCTCTCCTTCTCTCGCCGACTCTCGCCTTCTCCTCCGTCATTCCGGTTCGAAACCCGCTCCTCCGTCCGAGCCTGCCACCAGATAGATGGTAATGGAAACAAAGCGGATAAGCCCTCCGATTCGCTTGAGGGCTTGAATTGGGCTAAACCATTGTCCAATTTCGCGGCCAATAATTTTCTCCCAATAGCTCTTGTTGGTGGCGTGGCGTTGGGTTTTGCAAATCCAACCCTAGGTTGTCTTGCTGATTCATATTCTCTCTCGAAATTTAGCACATTTGGGATTTTTATCATCTCAGGGTTAACCTTGCACACTGGTGAAATTATTGCTGCTGCAGACGCATGGCCTGTTGGATTCTTCGGGCTTGTCTCCATCTTATTATTTACTCCATATTTTTCGAGGGTAATATTGCAACTGCCGCTCCAACCTCAAGAATTTGTTAGAGGGCTTGCAATATTTTGCTGTATGCCAACTACGTTATCAAGTGGAGTGGCACTTACTCAGTTAGCTGGGGCCAATACTGCTCTGGCTCTTGCAATGACAGTCGTCTCTAATCTGTTGGGAATCTTGATTGTCCCATTTTCTATATCAAAATTCATTGCTGACGGAGTTGGTGTATCTGTTCCAACTAAGCAGCTATTCAAAAGTCTTGTTCTCACGTTGTTGATACCCCTAATATTGGGGAAGATTTTTCGAGAATCTTTCAGAGGTGTCGCGGACTTTGTTGATCAGAACCGTAAAAATCTTTCCAAGATCAGTGCAATTCTCCTCAGTTTAGTGCCATGGATGCAAGTTAGCAGGTCAAGGTCACTGTTGTTGATGGTTAAGCCTGCAGTTTTTCTTGGGGCCATTGGAATGGGAATACTTCTGCATCTCCTCTTGTTAGCCTTTAATGCTGTTGCTGTTAAGAGCCTCGCAGCTGTTTCTGGTGGTAATCAATCAGAATTTTCGAAGAAGGAAAATGCAAATGCTGTTCTCCTTGTTGCAAGCCAGAAAACTCTGCCTGTAATGGTGGCTGTGGTTGAGCAACTAGGTGGTGCACTTGGTGAATCTGGTTTACTTGTTCTTCCTTGTGTTGCAGCACATTTAAATCAGATTATTCTGGACTCTATTCTTGTAAATTACTGGCGTCGCAAAGATCTGTTATCGACGAACAATGCCAAGGTATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF_like

Protein Analysis

408

Amino Acids

43.36

Weight (kDa)

9.76

Isoelectric Point (pI)

38.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF_like	PF13593	78 - 395	6.1e-47	SBF-like CPA transporter family (DUF4137)
SBF	PF01758	137 - 279	1.1e-13	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56160 AT3G56160 AT3G56160 AT3G56160 AT3G56160
fragaria_vesca	FvH4_7g05590 FvH4_7g05870
malus_domestica	MD02G1255900.v1.1 MD02G1256100.v1.1 MD02G1256200.v1.1
prunus_persica	Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1
pyrus_communis	pycom02g21680
rosa_chinensis	RchiOBHm_Chr1g0332541 RchiOBHm_Chr1g0332551 RchiOBHm_Chr1g0332571
rosa_laevigata	RLG00000029655 RLG00000029664
rosa_multiflora	Rmu_sc0004413.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318140
rosa_rugosa	Rorug01G0101700
rosa_samantha	Rh1AG126400 Rh1BG096200 Rh1CG120300 Rh1DG130500 Rh2AG156400 Rh4CG087600
rosa_wichuraiana	Rw0G002580 Rw1G010190 Rw1G010690 Rw6G006930 Rw6G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	840
AccBSI	CCGCTC	2 cut(s)	111, 472
AccII	CGCG	2 cut(s)	218, 767
AciI	CCGC	7 cut(s)	5, 41, 109, 158, 218, 470, 767
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	4 cut(s)	317, 485, 644, 995
AcyI	GRCGYC	1 cut(s)	1180
AdeI	CACNNNGTG	1 cut(s)	1097
AfiI	CCNNNNNNNGG	2 cut(s)	284, 730
AgsI	TTSAA	2 cut(s)	190, 694
AleI	CACNNNNGTG	1 cut(s)	366
AluBI	AGCT	4 cut(s)	242, 560, 688, 971
AluI	AGCT	4 cut(s)	242, 560, 688, 971
Alw21I	GWGCWC	1 cut(s)	1093
Alw26I	GTCTC	2 cut(s)	424, 604
Alw44I	GTGCAC	1 cut(s)	1089
AoxI	GGCC	4 cut(s)	219, 395, 564, 897
ApaLI	GTGCAC	1 cut(s)	1089
ApeKI	GCWGC	5 cut(s)	380, 383, 685, 968, 1130
ApoI	RAATTY	4 cut(s)	317, 485, 644, 995
AspA2I	CCTAGG	1 cut(s)	283
AspS9I	GGNCC	2 cut(s)	564, 897
AsuHPI	GGTGA	2 cut(s)	380, 1109
AsuII	TTCGAA	2 cut(s)	102, 1001
AvrII	CCTAGG	1 cut(s)	283
BaeGI	GKGCMC	1 cut(s)	1093
Bbv12I	GWGCWC	1 cut(s)	1093
BbvI	GCAGC	5 cut(s)	367, 370, 697, 980, 1142
BccI	CCATC	3 cut(s)	134, 431, 865
BclI	TGATCA	1 cut(s)	778
BcoDI	GTCTC	2 cut(s)	424, 604
BfaI	CTAG	2 cut(s)	284, 1082
BfmI	CTRYAG	2 cut(s)	384, 882
BfuAI	ACCTGC	1 cut(s)	840
BglII	AGATCT	1 cut(s)	1189
BisI	GCNGC	7 cut(s)	219, 381, 384, 470, 686, 969, 1131
BlnI	CCTAGG	1 cut(s)	283
BlsI	GCNGC	7 cut(s)	220, 382, 385, 471, 687, 970, 1132
BmgT120I	GGNCC	2 cut(s)	564, 897
BmiI	GGNNCC	2 cut(s)	565, 898
BmsI	GCATC	2 cut(s)	828, 931
BoxI	GACNNNNGTC	1 cut(s)	596
Bpu14I	TTCGAA	2 cut(s)	102, 1001
BpuEI	CTTGAG	2 cut(s)	200, 465
BsaBI	GATNNNNATC	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	1180
BsaJI	CCNNGG	3 cut(s)	283, 833, 1212
BsaWI	WCCGGW	1 cut(s)	96
BsaXI	ACNNNNNCTCC	4 cut(s)	456, 486, 651, 681
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 730
Bse1I	ACTGG	2 cut(s)	370, 1181
Bse3DI	GCAATG	2 cut(s)	594, 648
Bse8I	GATNNNNATC	1 cut(s)	338
BseDI	CCNNGG	3 cut(s)	283, 833, 1212
BseGI	GGATG	2 cut(s)	12, 843
BseJI	GATNNNNATC	1 cut(s)	338
BseLI	CCNNNNNNNGG	2 cut(s)	284, 730
BseMI	GCAATG	2 cut(s)	594, 648
BseMII	CTCAG	3 cut(s)	360, 566, 835
BseNI	ACTGG	2 cut(s)	370, 1181
BseRI	GAGGAG	5 cut(s)	27, 75, 103, 809, 917
BseSI	GKGCMC	1 cut(s)	1093
BseXI	GCAGC	5 cut(s)	367, 370, 697, 980, 1142
BseYI	CCCAGC	1 cut(s)	560
Bsh1236I	CGCG	2 cut(s)	218, 767
BshFI	GGCC	4 cut(s)	221, 397, 566, 899
BsiHKAI	GWGCWC	1 cut(s)	1093
BsiSI	CCGG	1 cut(s)	97
BslFI	GGGAC	1 cut(s)	611
BslI	CCNNNNNNNGG	2 cut(s)	284, 730
BsmAI	GTCTC	2 cut(s)	424, 604
BsmBI	CGTCTC	1 cut(s)	604
BsmFI	GGGAC	1 cut(s)	611
BsnI	GGCC	4 cut(s)	221, 397, 566, 899
Bsp119I	TTCGAA	2 cut(s)	102, 1001
Bsp1286I	GDGCHC	1 cut(s)	1093
Bsp143I	GATC	3 cut(s)	778, 804, 1189
Bsp19I	CCATGG	1 cut(s)	833
BspACI	CCGC	7 cut(s)	5, 41, 109, 158, 218, 470, 767
BspANI	GGCC	4 cut(s)	221, 397, 566, 899
BspCNI	CTCAG	3 cut(s)	359, 565, 834
BspFNI	CGCG	2 cut(s)	218, 767
BspHI	TCATGA	1 cut(s)	1220
BspLI	GGNNCC	2 cut(s)	565, 898
BspMAI	CTGCAG	2 cut(s)	388, 886
BspMI	ACCTGC	1 cut(s)	840
BspT104I	TTCGAA	2 cut(s)	102, 1001
BsrBI	CCGCTC	2 cut(s)	111, 472
BsrDI	GCAATG	2 cut(s)	594, 648
BsrI	ACTGG	2 cut(s)	370, 1181
BssECI	CCNNGG	3 cut(s)	283, 833, 1212
BssMI	GATC	3 cut(s)	778, 804, 1189
BssNI	GRCGYC	1 cut(s)	1180
BssT1I	CCWWGG	3 cut(s)	283, 833, 1212
Bst4CI	ACNGT	3 cut(s)	595, 788, 864
BstACI	GRCGYC	1 cut(s)	1180
BstBI	TTCGAA	2 cut(s)	102, 1001
BstC8I	GCNNGC	4 cut(s)	127, 501, 882, 1039
BstDEI	CTNAG	4 cut(s)	346, 552, 681, 821
BstDSI	CCRYGG	1 cut(s)	833
BstF5I	GGATG	2 cut(s)	12, 843
BstFNI	CGCG	2 cut(s)	218, 767
BstKTI	GATC	3 cut(s)	781, 807, 1192
BstMAI	GTCTC	2 cut(s)	424, 604
BstMBI	GATC	3 cut(s)	778, 804, 1189
BstMWI	GCNNNNNNNGC	5 cut(s)	389, 469, 572, 838, 944
BstPAI	GACNNNNGTC	1 cut(s)	596
BstSFI	CTRYAG	2 cut(s)	384, 882
BstSLI	GKGCMC	1 cut(s)	1093
BstUI	CGCG	2 cut(s)	218, 767
BstV1I	GCAGC	5 cut(s)	367, 370, 697, 980, 1142
BstX2I	RGATCY	1 cut(s)	1189
BstXI	CCANNNNNNTGG	2 cut(s)	140, 907
BstYI	RGATCY	1 cut(s)	1189
BsuRI	GGCC	4 cut(s)	221, 397, 566, 899
BtgI	CCRYGG	1 cut(s)	833
BtsCI	GGATG	2 cut(s)	12, 843
BtsIMutI	CAGTG	3 cut(s)	363, 814, 860
BveI	ACCTGC	1 cut(s)	840
Cac8I	GCNNGC	4 cut(s)	127, 501, 882, 1039
CciI	TCATGA	1 cut(s)	1220
Cfr13I	GGNCC	2 cut(s)	564, 897
CseI	GACGC	2 cut(s)	398, 1169
CspCI	CAANNNNNGTGG	2 cut(s)	522, 557
CviAII	CATG	3 cut(s)	393, 834, 1221
DdeI	CTNAG	4 cut(s)	346, 552, 681, 821
DpnI	GATC	3 cut(s)	780, 806, 1191
DpnII	GATC	3 cut(s)	778, 804, 1189
DraI	TTTAAA	1 cut(s)	1140
DraIII	CACNNNGTG	1 cut(s)	1097
EaeI	YGGCCR	1 cut(s)	219
EciI	GGCGGA	1 cut(s)	30
Eco130I	CCWWGG	3 cut(s)	283, 833, 1212
EcoT14I	CCWWGG	3 cut(s)	283, 833, 1212
ErhI	CCWWGG	3 cut(s)	283, 833, 1212
Esp3I	CGTCTC	1 cut(s)	604
FaeI	CATG	3 cut(s)	396, 837, 1224
FaiI	YATR	7 cut(s)	304, 394, 442, 518, 638, 835, 1222
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	3 cut(s)	392, 833, 1220
FauI	CCCGC	1 cut(s)	116
FbaI	TGATCA	1 cut(s)	778
Fnu4HI	GCNGC	7 cut(s)	219, 381, 384, 470, 686, 969, 1131
FokI	GGATG	1 cut(s)	850
Fsp4HI	GCNGC	7 cut(s)	219, 381, 384, 470, 686, 969, 1131
FspBI	CTAG	2 cut(s)	284, 1082
GluI	GCNGC	7 cut(s)	219, 381, 384, 470, 686, 969, 1131
GsaI	CCCAGC	1 cut(s)	564
HaeIII	GGCC	4 cut(s)	221, 397, 566, 899
HapII	CCGG	1 cut(s)	97
HgaI	GACGC	2 cut(s)	398, 1169
Hin1I	GRCGYC	1 cut(s)	1180
Hin1II	CATG	3 cut(s)	396, 837, 1224
HincII	GTYRAC	1 cut(s)	354
HindII	GTYRAC	1 cut(s)	354
HinfI	GANTC	9 cut(s)	9, 72, 173, 299, 405, 615, 749, 1100, 1157
HpaI	GTTAAC	1 cut(s)	354
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	2 cut(s)	380, 1109
Hpy166II	GTNNAC	3 cut(s)	354, 1091, 1109
Hpy188I	TCNGA	6 cut(s)	122, 172, 758, 783, 994, 1146
Hpy188III	TCNNGA	6 cut(s)	313, 482, 619, 746, 1154, 1221
Hpy8I	GTNNAC	3 cut(s)	354, 1091, 1109
Hpy99I	CGWCG	2 cut(s)	1185, 1204
HpyAV	CCTTC	3 cut(s)	70, 90, 1000
HpyCH4III	ACNGT	3 cut(s)	595, 788, 864
HpyCH4IV	ACGT	2 cut(s)	527, 710
HpyF10VI	GCNNNNNNNGC	5 cut(s)	389, 469, 572, 838, 944
HpyF3I	CTNAG	4 cut(s)	346, 552, 681, 821
HpySE526I	ACGT	2 cut(s)	527, 710
Hsp92I	GRCGYC	1 cut(s)	1180
Hsp92II	CATG	3 cut(s)	396, 837, 1224
Ksp22I	TGATCA	1 cut(s)	778
KspAI	GTTAAC	1 cut(s)	354
Kzo9I	GATC	3 cut(s)	778, 804, 1189
LmnI	GCTCC	2 cut(s)	116, 477
Lsp1109I	GCAGC	5 cut(s)	367, 370, 697, 980, 1142
LweI	GCATC	2 cut(s)	828, 931
MaeI	CTAG	2 cut(s)	284, 1082
MaeII	ACGT	2 cut(s)	527, 710
MaeIII	GTNAC	1 cut(s)	858
MalI	GATC	3 cut(s)	780, 806, 1191
MbiI	CCGCTC	2 cut(s)	111, 472
MboI	GATC	3 cut(s)	778, 804, 1189
MboII	GAAGA	4 cut(s)	400, 748, 1015, 1109
MflI	RGATCY	1 cut(s)	1189
MhlI	GDGCHC	1 cut(s)	1093
MlyI	GAGTC	2 cut(s)	66, 1151
MmeI	TCCRAC	4 cut(s)	302, 382, 499, 701
MseI	TTAA	5 cut(s)	353, 876, 942, 957, 1139
MslI	CAYNNNNRTG	2 cut(s)	366, 905
MspA1I	CMGCKG	1 cut(s)	971
MspI	CCGG	1 cut(s)	97
MvnI	CGCG	2 cut(s)	218, 767
MwoI	GCNNNNNNNGC	5 cut(s)	389, 469, 572, 838, 944
NcoI	CCATGG	1 cut(s)	833
NdeII	GATC	3 cut(s)	778, 804, 1189
NlaIII	CATG	3 cut(s)	396, 837, 1224
NlaIV	GGNNCC	2 cut(s)	565, 898
NmuCI	GTSAC	1 cut(s)	858
NspV	TTCGAA	2 cut(s)	102, 1001
OliI	CACNNNNGTG	1 cut(s)	366
PagI	TCATGA	1 cut(s)	1220
PfeI	GAWTC	7 cut(s)	9, 173, 299, 405, 615, 749, 1100
PkrI	GCNGC	7 cut(s)	220, 382, 385, 471, 687, 970, 1132
PleI	GAGTC	2 cut(s)	66, 1151
PpsI	GAGTC	2 cut(s)	66, 1151
PshAI	GACNNNNGTC	1 cut(s)	596
PspFI	CCCAGC	1 cut(s)	560
PspN4I	GGNNCC	2 cut(s)	565, 898
PspPI	GGNCC	2 cut(s)	564, 897
PstI	CTGCAG	2 cut(s)	388, 886
PsuI	RGATCY	1 cut(s)	1189
PvuII	CAGCTG	1 cut(s)	971
RseI	CAYNNNNRTG	2 cut(s)	366, 905
SaqAI	TTAA	5 cut(s)	353, 876, 942, 957, 1139
SatI	GCNGC	7 cut(s)	219, 381, 384, 470, 686, 969, 1131
Sau3AI	GATC	3 cut(s)	778, 804, 1189
Sau96I	GGNCC	2 cut(s)	564, 897
SchI	GAGTC	2 cut(s)	66, 1151
SduI	GDGCHC	1 cut(s)	1093
SfaNI	GCATC	2 cut(s)	828, 931
SfcI	CTRYAG	2 cut(s)	384, 882
SfuI	TTCGAA	2 cut(s)	102, 1001
SmiI	ATTTAAAT	1 cut(s)	1140
SmiMI	CAYNNNNRTG	2 cut(s)	366, 905
SmlI	CTYRAG	2 cut(s)	179, 480
SmoI	CTYRAG	2 cut(s)	179, 480
SsiI	CCGC	7 cut(s)	5, 41, 109, 158, 218, 470, 767
SspI	AATATT	3 cut(s)	459, 507, 729
SspMI	CTAG	2 cut(s)	284, 1082
StyI	CCWWGG	3 cut(s)	283, 833, 1212
SwaI	ATTTAAAT	1 cut(s)	1140
TaaI	ACNGT	3 cut(s)	595, 788, 864
TaiI	ACGT	2 cut(s)	530, 713
TaqI	TCGA	6 cut(s)	102, 314, 449, 745, 1001, 1199
TauI	GCSGC	2 cut(s)	221, 472
TfiI	GAWTC	7 cut(s)	9, 173, 299, 405, 615, 749, 1100
Tru1I	TTAA	5 cut(s)	353, 876, 942, 957, 1139
Tru9I	TTAA	5 cut(s)	353, 876, 942, 957, 1139
TscAI	CASTG	3 cut(s)	370, 814, 867
TseFI	GTSAC	1 cut(s)	858
TseI	GCWGC	5 cut(s)	380, 383, 685, 968, 1130
Tsp45I	GTSAC	1 cut(s)	858
TspDTI	ATGAA	2 cut(s)	291, 637
TspGWI	ACGGA	3 cut(s)	78, 106, 672
TspRI	CASTG	3 cut(s)	370, 814, 867
VneI	GTGCAC	1 cut(s)	1089
XapI	RAATTY	4 cut(s)	317, 485, 644, 995
XcmI	CCANNNNNNNNNTGG	2 cut(s)	137, 574
XmaJI	CCTAGG	1 cut(s)	283
XspI	CTAG	2 cut(s)	284, 1082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.