Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00079

Orthogroup ID

OG0003648

Physical Location & Seq

Genomic Coordinates Forward (+)

31973 .. 40485

Gene Structure 8513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G002580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGCGGGAATCATCCAAACCCTAGTTCTCACACCTCCGCCCACTCAAATCCTGTCCTTCTCTCACCGATTCTCCCGTTCTCCGTCCAACCACGCCGCATTCCGTTTCAATTTCCGTTTTAGCCGCTCCAATTCCACACCCGTCCGAGCCTGCCACCACTCCGATCAGATGGTAATGGAAACAAAGCTGATAAGCACTCCGGTTCGCTCAAGGGCTTGGATTGGGCTAAACCATTCAAATTTCGTGGCGAATAATTTTCTTCCTTTAGCTCTTGTTGGTGGAGTGACGTTAGGGTTTTGCGTATCCAGCCTAGGTTGTCTTGCTGATTCATACTCTTTGTCAAAATTTTCCACGTTCGGGATTTTTTCATCTCTCAGGTTAGAATGGTTAACCTTGCACACTGGCGAAATTATTGCAGCTGCAGACGCATGGCCTGTTGGAATCTTCGGGCTAGTCTCCATTTTATTATTTACTCCATATTTTTCAAGGGTAATATTGCAACTGCAGCTCCAACCTCAAGAATTTGTTAGAGGGCTTGCAATATTTTGCTGCATGCCAACTACGTTATCAAGTGGAGTGGCGCTTACTCAGCTAGCTGGCGCCAATTCTGCTCTTGCACTCGCAATGACTGTCATCTCTAATCTGTTGGGAATTTTGATTGTCCCATTTTCTGTATCAAAATTCATAGTTGATGGAGCTGGTTTATCTGTTCCAACTAAGCAGCTGTTCAAAAGTCTTTTTCTCACATTATTGATTCCCCTAATCTTGGGGAAGATTTTTCGAGAATCTTTCAAAGGTGTTGCAGACTTCGTTGATCAGAACCGTAAAAAACTTTCCAAGATCAGTGCAGTCCTCCTCAGTTTAGTGCCATGGATGCAAGTTAGCAGGTCAAGGTCACTGCTGCTGATGGTTAAGCCTGCAGTTTTTCTTGGGGCCGTTGGAATGGGAGTACTACTGCATCTCATCTTGTTAGCCTTTAATGCTGTTGCTGTTAAGAGCCTCTCAGCTCTGTCTGGTGGTAGTCAATCCGTTTTTTCCAAGAAGGAAAATGCAAATGCTGTTCTCCTTGTTGCAAGCCAGAAAACACTGCCTGTAATGGTGGCTGTGGTGGACCAACTAGGTGGTGCACTTGGTGAATCTGGTTTACTTGTTCTTCCTTGTGTTGCAGCACATTTAAATCAGATTATTCTGGACTCTATTCTTGTAAATTACTGGCTTCGCAAAGATCTCCCAACCAACAATGCCAAGGTATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF_like

Protein Analysis

418

Amino Acids

45.01

Weight (kDa)

10.03

Isoelectric Point (pI)

35.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF_like	PF13593	87 - 405	4.2e-41	SBF-like CPA transporter family (DUF4137)
SBF	PF01758	149 - 290	8.3e-14	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56160 AT3G56160 AT3G56160 AT3G56160 AT3G56160
fragaria_vesca	FvH4_7g05590 FvH4_7g05870
malus_domestica	MD02G1255900.v1.1 MD02G1256100.v1.1 MD02G1256200.v1.1
prunus_persica	Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1
pyrus_communis	pycom02g21680
rosa_chinensis	RchiOBHm_Chr1g0332541 RchiOBHm_Chr1g0332551 RchiOBHm_Chr1g0332571
rosa_laevigata	RLG00000029655 RLG00000029664
rosa_multiflora	Rmu_sc0004413.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318140
rosa_rugosa	Rorug01G0101700
rosa_samantha	Rh1AG126400 Rh1BG096200 Rh1CG120300 Rh1DG130500 Rh2AG156400 Rh4CG087600
rosa_wichuraiana	Rw0G002580 Rw1G010190 Rw1G010690 Rw6G006930 Rw6G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	876
AccB1I	GGYRCC	1 cut(s)	599
AccBSI	CCGCTC	1 cut(s)	126
AciI	CCGC	4 cut(s)	5, 38, 96, 124
AcsI	RAATTY	5 cut(s)	238, 344, 521, 651, 680
AcyI	GRCGYC	1 cut(s)	600
AdeI	CACNNNGTG	1 cut(s)	1133
AfaI	GTAC	1 cut(s)	951
AfiI	CCNNNNNNNGG	2 cut(s)	357, 766
AgsI	TTSAA	5 cut(s)	109, 237, 486, 730, 793
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AluBI	AGCT	9 cut(s)	187, 269, 419, 508, 592, 596, 698, 724, 1007
AluI	AGCT	9 cut(s)	187, 269, 419, 508, 592, 596, 698, 724, 1007
Alw21I	GWGCWC	1 cut(s)	1129
Alw26I	GTCTC	1 cut(s)	460
Alw44I	GTGCAC	1 cut(s)	1125
AoxI	GGCC	2 cut(s)	431, 933
ApaLI	GTGCAC	1 cut(s)	1125
ApeKI	GCWGC	7 cut(s)	416, 419, 505, 549, 721, 901, 1166
ApoI	RAATTY	5 cut(s)	238, 344, 521, 651, 680
AspA2I	CCTAGG	1 cut(s)	310
AspLEI	GCGC	2 cut(s)	583, 602
AspS9I	GGNCC	2 cut(s)	933, 1111
AsuHPI	GGTGA	2 cut(s)	56, 1145
AsuNHI	GCTAGC	1 cut(s)	592
AvaII	GGWCC	1 cut(s)	1111
AvrII	CCTAGG	1 cut(s)	310
BaeGI	GKGCMC	1 cut(s)	1129
BanI	GGYRCC	1 cut(s)	599
Bbv12I	GWGCWC	1 cut(s)	1129
BbvI	GCAGC	7 cut(s)	406, 428, 517, 536, 733, 888, 1178
BccI	CCATC	3 cut(s)	163, 686, 901
BceAI	ACGGC	1 cut(s)	920
BcgI	CGANNNNNNTGC	2 cut(s)	395, 429
BciVI	GTATCC	1 cut(s)	313
BclI	TGATCA	1 cut(s)	814
BcoDI	GTCTC	1 cut(s)	460
BfaI	CTAG	5 cut(s)	23, 311, 452, 593, 1118
BfmI	CTRYAG	3 cut(s)	420, 503, 918
BfoI	RGCGCY	2 cut(s)	584, 603
BfuAI	ACCTGC	1 cut(s)	876
BfuI	GTATCC	1 cut(s)	313
BglII	AGATCT	1 cut(s)	1225
BisI	GCNGC	9 cut(s)	96, 124, 417, 420, 506, 550, 722, 902, 1167
BlnI	CCTAGG	1 cut(s)	310
BlsI	GCNGC	9 cut(s)	97, 125, 418, 421, 507, 551, 723, 903, 1168
BmcAI	AGTACT	1 cut(s)	951
Bme18I	GGWCC	1 cut(s)	1111
BmgT120I	GGNCC	2 cut(s)	933, 1111
BmiI	GGNNCC	2 cut(s)	601, 934
BmsI	GCATC	2 cut(s)	864, 967
BmtI	GCTAGC	1 cut(s)	596
BpuEI	CTTGAG	2 cut(s)	193, 501
BsaHI	GRCGYC	1 cut(s)	600
BsaJI	CCNNGG	3 cut(s)	310, 869, 1245
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 492, 522
Bsc4I	CCNNNNNNNGG	2 cut(s)	357, 766
Bse1I	ACTGG	2 cut(s)	406, 1217
Bse3DI	GCAATG	1 cut(s)	630
BseDI	CCNNGG	3 cut(s)	310, 869, 1245
BseGI	GGATG	2 cut(s)	12, 879
BseLI	CCNNNNNNNGG	2 cut(s)	357, 766
BseMI	GCAATG	1 cut(s)	630
BseMII	CTCAG	4 cut(s)	388, 602, 871, 1017
BseNI	ACTGG	2 cut(s)	406, 1217
BseRI	GAGGAG	1 cut(s)	845
BseSI	GKGCMC	1 cut(s)	1129
BseXI	GCAGC	7 cut(s)	406, 428, 517, 536, 733, 888, 1178
BsgI	GTGCAG	1 cut(s)	867
BshFI	GGCC	2 cut(s)	433, 935
BshNI	GGYRCC	1 cut(s)	599
BsiHKAI	GWGCWC	1 cut(s)	1129
BsiSI	CCGG	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	647
BslI	CCNNNNNNNGG	2 cut(s)	357, 766
BsmAI	GTCTC	1 cut(s)	460
BsmFI	GGGAC	1 cut(s)	647
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	433, 935
Bsp1286I	GDGCHC	1 cut(s)	1129
Bsp143I	GATC	4 cut(s)	163, 814, 840, 1225
Bsp19I	CCATGG	1 cut(s)	869
BspACI	CCGC	4 cut(s)	5, 38, 96, 124
BspANI	GGCC	2 cut(s)	433, 935
BspCNI	CTCAG	4 cut(s)	387, 601, 870, 1016
BspLI	GGNNCC	2 cut(s)	601, 934
BspMAI	CTGCAG	3 cut(s)	424, 507, 922
BspMI	ACCTGC	1 cut(s)	876
BspOI	GCTAGC	1 cut(s)	596
BspT107I	GGYRCC	1 cut(s)	599
BsrBI	CCGCTC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	630
BsrI	ACTGG	2 cut(s)	406, 1217
BssECI	CCNNGG	3 cut(s)	310, 869, 1245
BssMI	GATC	4 cut(s)	163, 814, 840, 1225
BssNI	GRCGYC	1 cut(s)	600
BssT1I	CCWWGG	3 cut(s)	310, 869, 1245
Bst4CI	ACNGT	2 cut(s)	631, 824
BstACI	GRCGYC	1 cut(s)	600
BstC8I	GCNNGC	7 cut(s)	151, 537, 554, 594, 598, 918, 1075
BstDEI	CTNAG	5 cut(s)	374, 588, 717, 857, 1003
BstDSI	CCRYGG	1 cut(s)	869
BstF5I	GGATG	2 cut(s)	12, 879
BstH2I	RGCGCY	2 cut(s)	584, 603
BstHHI	GCGC	2 cut(s)	583, 602
BstKTI	GATC	4 cut(s)	166, 817, 843, 1228
BstMAI	GTCTC	1 cut(s)	460
BstMBI	GATC	4 cut(s)	163, 814, 840, 1225
BstMWI	GCNNNNNNNGC	7 cut(s)	306, 425, 505, 589, 608, 874, 980
BstNSI	RCATGY	1 cut(s)	556
BstSFI	CTRYAG	3 cut(s)	420, 503, 918
BstSLI	GKGCMC	1 cut(s)	1129
BstV1I	GCAGC	7 cut(s)	406, 428, 517, 536, 733, 888, 1178
BstX2I	RGATCY	1 cut(s)	1225
BstXI	CCANNNNNNTGG	1 cut(s)	1121
BstYI	RGATCY	1 cut(s)	1225
BsuI	GTATCC	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	433, 935
BtgI	CCRYGG	1 cut(s)	869
BtsCI	GGATG	2 cut(s)	12, 879
BtsI	GCAGTG	2 cut(s)	896, 1085
BtsIMutI	CAGTG	4 cut(s)	399, 850, 896, 1085
BveI	ACCTGC	1 cut(s)	876
Cac8I	GCNNGC	7 cut(s)	151, 537, 554, 594, 598, 918, 1075
CfoI	GCGC	2 cut(s)	583, 602
Cfr13I	GGNCC	2 cut(s)	933, 1111
CseI	GACGC	1 cut(s)	434
Csp6I	GTAC	1 cut(s)	950
CspCI	CAANNNNNGTGG	4 cut(s)	225, 260, 558, 593
CviAII	CATG	3 cut(s)	429, 553, 870
CviQI	GTAC	1 cut(s)	950
DdeI	CTNAG	5 cut(s)	374, 588, 717, 857, 1003
DinI	GGCGCC	1 cut(s)	601
DpnI	GATC	4 cut(s)	165, 816, 842, 1227
DpnII	GATC	4 cut(s)	163, 814, 840, 1225
DraI	TTTAAA	1 cut(s)	1176
DraIII	CACNNNGTG	1 cut(s)	1133
EciI	GGCGGA	1 cut(s)	27
Eco130I	CCWWGG	3 cut(s)	310, 869, 1245
Eco47I	GGWCC	1 cut(s)	1111
EcoT14I	CCWWGG	3 cut(s)	310, 869, 1245
EgeI	GGCGCC	1 cut(s)	601
EheI	GGCGCC	1 cut(s)	601
ErhI	CCWWGG	3 cut(s)	310, 869, 1245
FaeI	CATG	3 cut(s)	432, 556, 873
FaiI	YATR	6 cut(s)	331, 430, 478, 554, 686, 871
FaqI	GGGAC	1 cut(s)	647
FatI	CATG	3 cut(s)	428, 552, 869
FbaI	TGATCA	1 cut(s)	814
Fnu4HI	GCNGC	9 cut(s)	96, 124, 417, 420, 506, 550, 722, 902, 1167
FokI	GGATG	1 cut(s)	886
Fsp4HI	GCNGC	9 cut(s)	96, 124, 417, 420, 506, 550, 722, 902, 1167
FspBI	CTAG	5 cut(s)	23, 311, 452, 593, 1118
GlaI	GCGC	2 cut(s)	582, 601
GluI	GCNGC	9 cut(s)	96, 124, 417, 420, 506, 550, 722, 902, 1167
HaeII	RGCGCY	2 cut(s)	584, 603
HaeIII	GGCC	2 cut(s)	433, 935
HapII	CCGG	1 cut(s)	200
HgaI	GACGC	1 cut(s)	434
HhaI	GCGC	2 cut(s)	583, 602
Hin1I	GRCGYC	1 cut(s)	600
Hin1II	CATG	3 cut(s)	432, 556, 873
Hin6I	GCGC	2 cut(s)	581, 600
HinP1I	GCGC	2 cut(s)	581, 600
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	8 cut(s)	9, 69, 326, 441, 754, 785, 1136, 1193
HpaI	GTTAAC	1 cut(s)	390
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	2 cut(s)	56, 1145
Hpy166II	GTNNAC	4 cut(s)	390, 1111, 1127, 1145
Hpy188I	TCNGA	5 cut(s)	146, 163, 168, 819, 1182
Hpy188III	TCNNGA	5 cut(s)	358, 518, 782, 1190, 1254
Hpy8I	GTNNAC	4 cut(s)	390, 1111, 1127, 1145
HpyAV	CCTTC	2 cut(s)	67, 1036
HpyCH4III	ACNGT	2 cut(s)	631, 824
HpyCH4IV	ACGT	3 cut(s)	287, 353, 563
HpyF10VI	GCNNNNNNNGC	7 cut(s)	306, 425, 505, 589, 608, 874, 980
HpyF3I	CTNAG	5 cut(s)	374, 588, 717, 857, 1003
HpySE526I	ACGT	3 cut(s)	287, 353, 563
Hsp92I	GRCGYC	1 cut(s)	600
Hsp92II	CATG	3 cut(s)	432, 556, 873
HspAI	GCGC	2 cut(s)	581, 600
KasI	GGCGCC	1 cut(s)	599
Ksp22I	TGATCA	1 cut(s)	814
KspAI	GTTAAC	1 cut(s)	390
Kzo9I	GATC	4 cut(s)	163, 814, 840, 1225
LmnI	GCTCC	3 cut(s)	131, 513, 695
Lsp1109I	GCAGC	7 cut(s)	406, 428, 517, 536, 733, 888, 1178
LweI	GCATC	2 cut(s)	864, 967
MaeI	CTAG	5 cut(s)	23, 311, 452, 593, 1118
MaeII	ACGT	3 cut(s)	287, 353, 563
MaeIII	GTNAC	2 cut(s)	283, 894
MalI	GATC	4 cut(s)	165, 816, 842, 1227
MbiI	CCGCTC	1 cut(s)	126
MboI	GATC	4 cut(s)	163, 814, 840, 1225
MboII	GAAGA	4 cut(s)	251, 436, 784, 1145
MflI	RGATCY	1 cut(s)	1225
MhlI	GDGCHC	1 cut(s)	1129
Mly113I	GGCGCC	1 cut(s)	600
MlyI	GAGTC	1 cut(s)	1187
MmeI	TCCRAC	5 cut(s)	111, 418, 535, 737, 919
MnlI	CCTC	6 cut(s)	45, 524, 525, 863, 866, 1010
MseI	TTAA	5 cut(s)	389, 912, 978, 993, 1175
MspA1I	CMGCKG	2 cut(s)	419, 724
MspI	CCGG	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	98
MwoI	GCNNNNNNNGC	7 cut(s)	306, 425, 505, 589, 608, 874, 980
NarI	GGCGCC	1 cut(s)	600
NcoI	CCATGG	1 cut(s)	869
NdeII	GATC	4 cut(s)	163, 814, 840, 1225
NheI	GCTAGC	1 cut(s)	592
NlaIII	CATG	3 cut(s)	432, 556, 873
NlaIV	GGNNCC	2 cut(s)	601, 934
NmuCI	GTSAC	2 cut(s)	283, 894
NspI	RCATGY	1 cut(s)	556
PaeI	GCATGC	1 cut(s)	556
PctI	GAATGC	1 cut(s)	98
PfeI	GAWTC	7 cut(s)	9, 69, 326, 441, 754, 785, 1136
PkrI	GCNGC	9 cut(s)	97, 125, 418, 421, 507, 551, 723, 903, 1168
PleI	GAGTC	1 cut(s)	1187
PluTI	GGCGCC	1 cut(s)	603
PpsI	GAGTC	1 cut(s)	1187
PspN4I	GGNNCC	2 cut(s)	601, 934
PspPI	GGNCC	2 cut(s)	933, 1111
PstI	CTGCAG	3 cut(s)	424, 507, 922
PsuI	RGATCY	1 cut(s)	1225
PvuII	CAGCTG	2 cut(s)	419, 724
RsaI	GTAC	1 cut(s)	951
RsaNI	GTAC	1 cut(s)	950
SaqAI	TTAA	5 cut(s)	389, 912, 978, 993, 1175
SatI	GCNGC	9 cut(s)	96, 124, 417, 420, 506, 550, 722, 902, 1167
Sau3AI	GATC	4 cut(s)	163, 814, 840, 1225
Sau96I	GGNCC	2 cut(s)	933, 1111
ScaI	AGTACT	1 cut(s)	951
SchI	GAGTC	1 cut(s)	1187
SduI	GDGCHC	1 cut(s)	1129
SfaNI	GCATC	2 cut(s)	864, 967
SfcI	CTRYAG	3 cut(s)	420, 503, 918
SfoI	GGCGCC	1 cut(s)	601
SinI	GGWCC	1 cut(s)	1111
SmiI	ATTTAAAT	1 cut(s)	1176
SmlI	CTYRAG	2 cut(s)	208, 516
SmoI	CTYRAG	2 cut(s)	208, 516
SphI	GCATGC	1 cut(s)	556
SsiI	CCGC	4 cut(s)	5, 38, 96, 124
SspDI	GGCGCC	1 cut(s)	599
SspI	AATATT	2 cut(s)	495, 543
SspMI	CTAG	5 cut(s)	23, 311, 452, 593, 1118
StyI	CCWWGG	3 cut(s)	310, 869, 1245
SwaI	ATTTAAAT	1 cut(s)	1176
TaaI	ACNGT	2 cut(s)	631, 824
TaiI	ACGT	3 cut(s)	290, 356, 566
TaqI	TCGA	1 cut(s)	781
TatI	WGTACW	1 cut(s)	949
TauI	GCSGC	2 cut(s)	98, 126
TfiI	GAWTC	7 cut(s)	9, 69, 326, 441, 754, 785, 1136
Tru1I	TTAA	5 cut(s)	389, 912, 978, 993, 1175
Tru9I	TTAA	5 cut(s)	389, 912, 978, 993, 1175
TscAI	CASTG	4 cut(s)	406, 850, 903, 1092
TseFI	GTSAC	2 cut(s)	283, 894
TseI	GCWGC	7 cut(s)	416, 419, 505, 549, 721, 901, 1166
Tsp45I	GTSAC	2 cut(s)	283, 894
TspDTI	ATGAA	3 cut(s)	318, 357, 673
TspGWI	ACGGA	4 cut(s)	72, 92, 104, 1018
TspRI	CASTG	4 cut(s)	406, 850, 903, 1092
VneI	GTGCAC	1 cut(s)	1125
VpaK11BI	GGWCC	1 cut(s)	1111
XapI	RAATTY	5 cut(s)	238, 344, 521, 651, 680
XceI	RCATGY	1 cut(s)	556
XmaJI	CCTAGG	1 cut(s)	310
XspI	CTAG	5 cut(s)	23, 311, 452, 593, 1118
ZrmI	AGTACT	1 cut(s)	951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.