Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003648

Physical Location & Seq

Genomic Coordinates Reverse (-)

23494419 .. 23503964

Gene Structure 9546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG126400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCGGGAATCATCCAAACCCTAGTTCTCTCACCTCCACCCACTAAAATCCTGTCCTTCTCTCACCGATTCTCCCGTTCTCCGTCCAACCACGCCGCATTCCGTTTCAATTTCCGTTTTAGCCGCTCCAATTCCACACCCGTCCGAGCCTGCCACCACTCCGATCAGGTAGATGGTAATGGAAACAAAGCTGATAAGCATTCCGGTTCGCTCAAGGGCTTGGATTGGGCTAAACCATTGTCAAATTTCGTGGCAAATAATTTTCTTCCTTTAGCTCTTGTTGGTGGAGTGACGTTAGGGTTTGCGTATCCAAGCCTAGGTTGTCTTGCTGATTCATACTCTTTGTCAAAATTTTCCACATTCGGGATTTTTATCATCTCAGGATTAACCTTGCACACTGGCGAAATTATTGCAGCTGCAGACGCATGGCCTGTTGGAATCTTCGGGCTAGTCTCCATTTTATTATTTACTCCATATTTTTCGAGGGTAATATTGCAACTGCAGCTCCAACCTCAAGAATTTGTTAGAGGGCTTGCAATATTTTGCTGCATGCCAACTACGTTATCAAGTGGAGTGGCGCTTACCCAGCTAGCTGGGGCCAATTCTGCTCTTGCTCTCGCAATGACTGTCATCTCTAATCTGTTGGGAATTTTGATTGTCCCATTTTCTGTATCAAAATTCATAGCTGATGGAGCTGGTTTATCTGTTCCAACTAAGCAGCTGTTCAAAAGTCTTTTTCTCACATTATTGATCCCCCTAATCTTGGGGAAGATTTTTCGAGAATCTTTCGAAGGTGTTGCAGACTTCGTTGATCAGAACCGTAAAAAACTTTCCAAGATCAGTGCAATCCTCCTCAGTTTAGTAAGACCAATACCCTGGTTTAAAATTTTGCTATTTATTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF_like

Protein Analysis

301

Amino Acids

32.58

Weight (kDa)

9.88

Isoelectric Point (pI)

32.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF_like	PF13593	89 - 288	2.6e-33	SBF-like CPA transporter family (DUF4137)
SBF	PF01758	147 - 287	1.9e-14	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56160 AT3G56160 AT3G56160 AT3G56160 AT3G56160
fragaria_vesca	FvH4_7g05590 FvH4_7g05870
malus_domestica	MD02G1255900.v1.1 MD02G1256100.v1.1 MD02G1256200.v1.1
prunus_persica	Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1
pyrus_communis	pycom02g21680
rosa_chinensis	RchiOBHm_Chr1g0332541 RchiOBHm_Chr1g0332551 RchiOBHm_Chr1g0332571
rosa_laevigata	RLG00000029655 RLG00000029664
rosa_multiflora	Rmu_sc0004413.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318140
rosa_rugosa	Rorug01G0101700
rosa_samantha	Rh1AG126400 Rh1BG096200 Rh1CG120300 Rh1DG130500 Rh2AG156400 Rh4CG087600
rosa_wichuraiana	Rw0G002580 Rw1G010190 Rw1G010690 Rw6G006930 Rw6G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	126
AciI	CCGC	3 cut(s)	5, 96, 124
AclWI	GGATC	1 cut(s)	745
AcsI	RAATTY	6 cut(s)	244, 350, 518, 648, 677, 885
AfiI	CCNNNNNNNGG	3 cut(s)	317, 363, 763
AgsI	TTSAA	2 cut(s)	109, 727
AjnI	CCWGG	1 cut(s)	875
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AluBI	AGCT	9 cut(s)	191, 275, 416, 505, 589, 593, 686, 695, 721
AluI	AGCT	9 cut(s)	191, 275, 416, 505, 589, 593, 686, 695, 721
Alw26I	GTCTC	1 cut(s)	457
AlwI	GGATC	1 cut(s)	745
AoxI	GGCC	2 cut(s)	428, 597
ApeKI	GCWGC	5 cut(s)	413, 416, 502, 546, 718
ApoI	RAATTY	6 cut(s)	244, 350, 518, 648, 677, 885
AspA2I	CCTAGG	1 cut(s)	316
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	1 cut(s)	597
AsuHPI	GGTGA	2 cut(s)	24, 56
AsuII	TTCGAA	1 cut(s)	789
AsuNHI	GCTAGC	1 cut(s)	589
AvrII	CCTAGG	1 cut(s)	316
BbvI	GCAGC	5 cut(s)	403, 425, 514, 533, 730
BccI	CCATC	2 cut(s)	167, 683
BcgI	CGANNNNNNTGC	4 cut(s)	392, 426, 779, 813
BciT130I	CCWGG	1 cut(s)	877
BciVI	GTATCC	1 cut(s)	318
BclI	TGATCA	1 cut(s)	811
BcoDI	GTCTC	1 cut(s)	457
BfaI	CTAG	4 cut(s)	23, 317, 449, 590
BfmI	CTRYAG	2 cut(s)	417, 500
BfoI	RGCGCY	1 cut(s)	581
BfuI	GTATCC	1 cut(s)	318
BisI	GCNGC	7 cut(s)	96, 124, 414, 417, 503, 547, 719
BlnI	CCTAGG	1 cut(s)	316
BlsI	GCNGC	7 cut(s)	97, 125, 415, 418, 504, 548, 720
Bme1390I	CCNGG	1 cut(s)	877
BmgT120I	GGNCC	1 cut(s)	597
BmiI	GGNNCC	1 cut(s)	598
BmrFI	CCNGG	1 cut(s)	877
BmtI	GCTAGC	1 cut(s)	593
Bpu14I	TTCGAA	1 cut(s)	789
BpuEI	CTTGAG	2 cut(s)	197, 498
BsaBI	GATNNNNATC	1 cut(s)	371
BsaJI	CCNNGG	2 cut(s)	316, 875
BsaWI	WCCGGW	1 cut(s)	203
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 489, 519
Bsc4I	CCNNNNNNNGG	3 cut(s)	317, 363, 763
Bse1I	ACTGG	1 cut(s)	403
Bse3DI	GCAATG	1 cut(s)	627
Bse8I	GATNNNNATC	1 cut(s)	371
BseBI	CCWGG	1 cut(s)	877
BseDI	CCNNGG	2 cut(s)	316, 875
BseGI	GGATG	1 cut(s)	12
BseJI	GATNNNNATC	1 cut(s)	371
BseLI	CCNNNNNNNGG	3 cut(s)	317, 363, 763
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	2 cut(s)	393, 868
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	1 cut(s)	842
BseXI	GCAGC	5 cut(s)	403, 425, 514, 533, 730
BseYI	CCCAGC	2 cut(s)	585, 593
BshFI	GGCC	2 cut(s)	430, 599
BsiSI	CCGG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	644
BslI	CCNNNNNNNGG	3 cut(s)	317, 363, 763
BsmAI	GTCTC	1 cut(s)	457
BsmFI	GGGAC	1 cut(s)	644
BsmI	GAATGC	2 cut(s)	98, 199
BsnI	GGCC	2 cut(s)	430, 599
Bsp119I	TTCGAA	1 cut(s)	789
Bsp143I	GATC	4 cut(s)	163, 750, 811, 837
BspACI	CCGC	3 cut(s)	5, 96, 124
BspANI	GGCC	2 cut(s)	430, 599
BspCNI	CTCAG	2 cut(s)	392, 867
BspLI	GGNNCC	1 cut(s)	598
BspMAI	CTGCAG	2 cut(s)	421, 504
BspOI	GCTAGC	1 cut(s)	593
BspPI	GGATC	1 cut(s)	745
BspT104I	TTCGAA	1 cut(s)	789
BsrBI	CCGCTC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	627
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	2 cut(s)	316, 875
BssMI	GATC	4 cut(s)	163, 750, 811, 837
BssT1I	CCWWGG	1 cut(s)	316
Bst2UI	CCWGG	1 cut(s)	877
Bst4CI	ACNGT	2 cut(s)	628, 821
BstBI	TTCGAA	1 cut(s)	789
BstC8I	GCNNGC	4 cut(s)	151, 534, 551, 591
BstDEI	CTNAG	3 cut(s)	379, 714, 854
BstF5I	GGATG	1 cut(s)	12
BstH2I	RGCGCY	1 cut(s)	581
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	4 cut(s)	166, 753, 814, 840
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	4 cut(s)	163, 750, 811, 837
BstMWI	GCNNNNNNNGC	5 cut(s)	422, 502, 586, 605, 692
BstNI	CCWGG	1 cut(s)	877
BstNSI	RCATGY	1 cut(s)	553
BstSCI	CCNGG	1 cut(s)	875
BstSFI	CTRYAG	2 cut(s)	417, 500
BstV1I	GCAGC	5 cut(s)	403, 425, 514, 533, 730
BstXI	CCANNNNNNTGG	2 cut(s)	593, 876
BsuI	GTATCC	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	430, 599
BtsCI	GGATG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	396, 847
Cac8I	GCNNGC	4 cut(s)	151, 534, 551, 591
CfoI	GCGC	1 cut(s)	580
Cfr13I	GGNCC	1 cut(s)	597
CseI	GACGC	1 cut(s)	431
CspCI	CAANNNNNGTGG	4 cut(s)	231, 266, 555, 590
CviAII	CATG	2 cut(s)	426, 550
DdeI	CTNAG	3 cut(s)	379, 714, 854
DpnI	GATC	4 cut(s)	165, 752, 813, 839
DpnII	GATC	4 cut(s)	163, 750, 811, 837
DraI	TTTAAA	1 cut(s)	883
Eco130I	CCWWGG	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	875
EcoT14I	CCWWGG	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	2 cut(s)	429, 553
FaiI	YATR	5 cut(s)	337, 427, 475, 551, 683
FaqI	GGGAC	1 cut(s)	644
FatI	CATG	2 cut(s)	425, 549
FbaI	TGATCA	1 cut(s)	811
Fnu4HI	GCNGC	7 cut(s)	96, 124, 414, 417, 503, 547, 719
Fsp4HI	GCNGC	7 cut(s)	96, 124, 414, 417, 503, 547, 719
FspBI	CTAG	4 cut(s)	23, 317, 449, 590
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	7 cut(s)	96, 124, 414, 417, 503, 547, 719
GsaI	CCCAGC	2 cut(s)	589, 597
HaeII	RGCGCY	1 cut(s)	581
HaeIII	GGCC	2 cut(s)	430, 599
HapII	CCGG	1 cut(s)	204
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	1 cut(s)	580
Hin1II	CATG	2 cut(s)	429, 553
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HinfI	GANTC	5 cut(s)	9, 69, 332, 438, 782
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	2 cut(s)	24, 56
Hpy188I	TCNGA	3 cut(s)	146, 163, 816
Hpy188III	TCNNGA	4 cut(s)	364, 381, 515, 779
HpyAV	CCTTC	2 cut(s)	67, 785
HpyCH4III	ACNGT	2 cut(s)	628, 821
HpyCH4IV	ACGT	2 cut(s)	293, 560
HpyCH4V	TGCA	9 cut(s)	394, 413, 419, 496, 502, 536, 549, 800, 845
HpyF10VI	GCNNNNNNNGC	5 cut(s)	422, 502, 586, 605, 692
HpyF3I	CTNAG	3 cut(s)	379, 714, 854
HpySE526I	ACGT	2 cut(s)	293, 560
Hsp92II	CATG	2 cut(s)	429, 553
HspAI	GCGC	1 cut(s)	578
Ksp22I	TGATCA	1 cut(s)	811
Kzo9I	GATC	4 cut(s)	163, 750, 811, 837
LmnI	GCTCC	3 cut(s)	131, 510, 692
Lsp1109I	GCAGC	5 cut(s)	403, 425, 514, 533, 730
MaeI	CTAG	4 cut(s)	23, 317, 449, 590
MaeII	ACGT	2 cut(s)	293, 560
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	4 cut(s)	165, 752, 813, 839
MbiI	CCGCTC	1 cut(s)	126
MboI	GATC	4 cut(s)	163, 750, 811, 837
MboII	GAAGA	3 cut(s)	257, 433, 781
MmeI	TCCRAC	4 cut(s)	111, 415, 532, 734
MnlI	CCTC	6 cut(s)	45, 477, 521, 522, 860, 863
MseI	TTAA	2 cut(s)	386, 882
MspA1I	CMGCKG	2 cut(s)	416, 721
MspI	CCGG	1 cut(s)	204
MspR9I	CCNGG	1 cut(s)	877
Mva1269I	GAATGC	2 cut(s)	98, 199
MvaI	CCWGG	1 cut(s)	877
MwoI	GCNNNNNNNGC	5 cut(s)	422, 502, 586, 605, 692
NdeII	GATC	4 cut(s)	163, 750, 811, 837
NheI	GCTAGC	1 cut(s)	589
NlaIII	CATG	2 cut(s)	429, 553
NlaIV	GGNNCC	1 cut(s)	598
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	1 cut(s)	553
NspV	TTCGAA	1 cut(s)	789
PaeI	GCATGC	1 cut(s)	553
PctI	GAATGC	2 cut(s)	98, 199
PfeI	GAWTC	5 cut(s)	9, 69, 332, 438, 782
PkrI	GCNGC	7 cut(s)	97, 125, 415, 418, 504, 548, 720
Psp6I	CCWGG	1 cut(s)	875
PspFI	CCCAGC	2 cut(s)	585, 593
PspGI	CCWGG	1 cut(s)	875
PspN4I	GGNNCC	1 cut(s)	598
PspPI	GGNCC	1 cut(s)	597
PstI	CTGCAG	2 cut(s)	421, 504
PvuII	CAGCTG	2 cut(s)	416, 721
SaqAI	TTAA	2 cut(s)	386, 882
SatI	GCNGC	7 cut(s)	96, 124, 414, 417, 503, 547, 719
Sau3AI	GATC	4 cut(s)	163, 750, 811, 837
Sau96I	GGNCC	1 cut(s)	597
ScrFI	CCNGG	1 cut(s)	877
SfcI	CTRYAG	2 cut(s)	417, 500
SfuI	TTCGAA	1 cut(s)	789
SmlI	CTYRAG	2 cut(s)	212, 513
SmoI	CTYRAG	2 cut(s)	212, 513
SphI	GCATGC	1 cut(s)	553
SsiI	CCGC	3 cut(s)	5, 96, 124
SspI	AATATT	2 cut(s)	492, 540
SspMI	CTAG	4 cut(s)	23, 317, 449, 590
StyD4I	CCNGG	1 cut(s)	875
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	2 cut(s)	628, 821
TaiI	ACGT	2 cut(s)	296, 563
TaqI	TCGA	3 cut(s)	482, 778, 789
TauI	GCSGC	2 cut(s)	98, 126
TfiI	GAWTC	5 cut(s)	9, 69, 332, 438, 782
Tru1I	TTAA	2 cut(s)	386, 882
Tru9I	TTAA	2 cut(s)	386, 882
TscAI	CASTG	2 cut(s)	403, 847
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	5 cut(s)	413, 416, 502, 546, 718
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	3 cut(s)	324, 670, 890
TspGWI	ACGGA	3 cut(s)	72, 92, 104
TspRI	CASTG	2 cut(s)	403, 847
XapI	RAATTY	6 cut(s)	244, 350, 518, 648, 677, 885
XceI	RCATGY	1 cut(s)	553
XmaJI	CCTAGG	1 cut(s)	316
XspI	CTAG	4 cut(s)	23, 317, 449, 590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.