Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003648

Physical Location & Seq

Genomic Coordinates Forward (+)

30846336 .. 30854033

Gene Structure 7698 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1256200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGTTCCTGTGCCATGGATACAAGTTAGCAGGTCCAGGTCACTGCTGTTGATGGTTAAGCCCTCAGTTTTTCTTGTGGCTATGGGAATGGGAATACTTCTGCACATCAGCTTTTTAGTCTTTAACGCTATTGCGATAAGGGGCATTTCAGCTCTCTCTGGTGGCAGTCGGTCAGTGTTTTCCAAGAAAGAAAATGCCAATGCTGTTCTCCTTGTTGCGAGCCAGAAAACTCTGCCTGTAATGGTGGCTGTAGTTGAGCAACTTGGTGGTGCACTGGGTGAATCCGGTTTGCTTGTTCTTCCTTGTATTGCAGCACACTTTAATCAGGTTATTTTTGACTCGTTTCTTGTAAACTTCTGGATTCAGAAGGACGCCTCAACCAACAGTGCAATGAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF_like

Protein Analysis

134

Amino Acids

14.22

Weight (kDa)

10.01

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF_like	PF13593	6 - 120	7.1e-09	SBF-like CPA transporter family (DUF4137)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56160 AT3G56160 AT3G56160 AT3G56160 AT3G56160
fragaria_vesca	FvH4_7g05590 FvH4_7g05870
malus_domestica	MD02G1255900.v1.1 MD02G1256100.v1.1 MD02G1256200.v1.1
prunus_persica	Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1
pyrus_communis	pycom02g21680
rosa_chinensis	RchiOBHm_Chr1g0332541 RchiOBHm_Chr1g0332551 RchiOBHm_Chr1g0332571
rosa_laevigata	RLG00000029655 RLG00000029664
rosa_multiflora	Rmu_sc0004413.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318140
rosa_rugosa	Rorug01G0101700
rosa_samantha	Rh1AG126400 Rh1BG096200 Rh1CG120300 Rh1DG130500 Rh2AG156400 Rh4CG087600
rosa_wichuraiana	Rw0G002580 Rw1G010190 Rw1G010690 Rw6G006930 Rw6G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	21
AcyI	GRCGYC	1 cut(s)	372
AdeI	CACNNNGTG	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	35
AluBI	AGCT	2 cut(s)	111, 152
AluI	AGCT	2 cut(s)	111, 152
Alw21I	GWGCWC	1 cut(s)	274
Alw44I	GTGCAC	1 cut(s)	270
ApaLI	GTGCAC	1 cut(s)	270
ApeKI	GCWGC	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	33
BaeGI	GKGCMC	1 cut(s)	274
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	37
BciVI	GTATCC	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	249
BfuAI	ACCTGC	1 cut(s)	21
BfuI	GTATCC	1 cut(s)	12
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	1 cut(s)	37
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	37
BmrI	ACTGGG	1 cut(s)	284
BmuI	ACTGGG	1 cut(s)	284
BsaHI	GRCGYC	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	14
BsaWI	WCCGGW	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	37
BseDI	CCNNGG	1 cut(s)	14
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	279
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	323
BsgI	GTGCAG	1 cut(s)	86
BsiHKAI	GWGCWC	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	285
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp19I	CCATGG	1 cut(s)	14
BspCNI	CTCAG	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	21
BsrDI	GCAATG	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	14
BssNI	GRCGYC	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	386
BstACI	GRCGYC	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	64
BstDSI	CCRYGG	1 cut(s)	14
BstNI	CCWGG	1 cut(s)	37
BstSCI	CCNGG	1 cut(s)	35
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	274
BstV1I	GCAGC	1 cut(s)	323
BsuI	GTATCC	1 cut(s)	12
BtgI	CCRYGG	1 cut(s)	14
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	4 cut(s)	41, 180, 272, 391
BveI	ACCTGC	1 cut(s)	21
Cac8I	GCNNGC	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	33
CseI	GACGC	1 cut(s)	380
CviAII	CATG	1 cut(s)	15
CviJI	RGCY	7 cut(s)	61, 80, 111, 152, 222, 248, 397
CviKI_1	RGCY	7 cut(s)	61, 80, 111, 152, 222, 248, 397
DdeI	CTNAG	1 cut(s)	64
DraIII	CACNNNGTG	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	35
EcoT14I	CCWWGG	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	1 cut(s)	18
FaiI	YATR	2 cut(s)	16, 83
FatI	CATG	1 cut(s)	14
Fnu4HI	GCNGC	1 cut(s)	312
Fsp4HI	GCNGC	1 cut(s)	312
GluI	GCNGC	1 cut(s)	312
HapII	CCGG	1 cut(s)	285
HgaI	GACGC	1 cut(s)	380
Hin1I	GRCGYC	1 cut(s)	372
Hin1II	CATG	1 cut(s)	18
HinfI	GANTC	3 cut(s)	281, 338, 361
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	2 cut(s)	272, 352
Hpy188I	TCNGA	1 cut(s)	366
Hpy188III	TCNNGA	1 cut(s)	358
Hpy8I	GTNNAC	2 cut(s)	272, 352
HpyAV	CCTTC	1 cut(s)	361
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4V	TGCA	4 cut(s)	103, 272, 311, 389
HpyF3I	CTNAG	1 cut(s)	64
Hsp92I	GRCGYC	1 cut(s)	372
Hsp92II	CATG	1 cut(s)	18
Lsp1109I	GCAGC	1 cut(s)	323
MaeIII	GTNAC	1 cut(s)	39
MboII	GAAGA	1 cut(s)	290
MhlI	GDGCHC	1 cut(s)	274
MlyI	GAGTC	1 cut(s)	332
MnlI	CCTC	2 cut(s)	73, 385
MseI	TTAA	3 cut(s)	57, 123, 321
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	37
MvaI	CCWGG	1 cut(s)	37
NcoI	CCATGG	1 cut(s)	14
NlaIII	CATG	1 cut(s)	18
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	281, 361
PkrI	GCNGC	1 cut(s)	313
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	35
PspGI	CCWGG	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	33
SaqAI	TTAA	3 cut(s)	57, 123, 321
SatI	GCNGC	1 cut(s)	312
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	5 cut(s)	35, 41, 113, 154, 330
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	35
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	386
TaqII	GACCGA	1 cut(s)	159
TfiI	GAWTC	2 cut(s)	281, 361
Tru1I	TTAA	3 cut(s)	57, 123, 321
Tru9I	TTAA	3 cut(s)	57, 123, 321
TscAI	CASTG	4 cut(s)	48, 180, 279, 391
TseFI	GTSAC	1 cut(s)	39
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	39
TspRI	CASTG	4 cut(s)	48, 180, 279, 391
VneI	GTGCAC	1 cut(s)	270
VpaK11BI	GGWCC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.