Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003648

Physical Location & Seq

Genomic Coordinates Forward (+)

30781901 .. 30788217

Gene Structure 6317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1255900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGCGGGAACCATCCAAGCCCTAATTCTCACACCCCCACCCGCCCAAACGCTGCCGTTTGCTCACCGGCTCCCACATTTTCCGTCCATACATGCCGCGTTCCGCTTCAATCATCGACTTAGCCGCAGCATTTCGAACCCCGTCAAAGCCTGCCAACACCCCGATCAGAAAGATGGTAATGGAAACAAACCTCACCGGCATTCGGGTTCGGTGAAGAGCTTGAATTGGGCTAAACCCTTGTCGAATTTTCTGGCGAATAATTTTCTTCCCTTAGCTCTTGTTGGTGGAGTAGCTTTAGGGATTGCAAATCCTAGTTTAGGTTGTCTCGCTGATACGTATTCTTTGTCAAAATTCAGCACATTTGGGATTTTTATCATCTCAGGGTTGACCTTGCACACTGGAGAAATTGTTGCAGCTGCAGAAGCATGGCCTGTCGGAATATTTGGGCTAGTCTCCATTCTATTATTTACTCCATATTTTTCGAGGGTAATATTGCAACTGCAGCTTCAACCTCAAGAGTTTGTTAGAGGGCTTGCACTATTTTGCTGTATGCCAACCACATTATCAAGTGGAGTGGCGCTTACTCAGCTTGCCGGAGCCAATTCTGCCCTTGCTCTTGCAATGACTGTGATTTCTAACCTGTTAGGAATTTTAATTGTTCCATTTTCTATATCAAAGTTCATAGCCGATGGAGTTGGTGTATCTATTCCGACTAAGCAGCTGTTTAAAAGTCTCGTTCTCACATTGTTGATCCCTCTAATCTTGGGGAAGATTTGTCGAGAATCCTTCAGAGGTGTTGCAGACTTTGTTGATCAAAACCGGAAGCTTTTTTCTAAGCTCAGTGCAATCTTCCTCAGTCTAGTGCCATGGATACAAGTTAGCAGGTCCAGGTCACTGCTGTTGATGGTTAAACCTCCAGTTTTTCTTGTGGCTATTGGAATGGGAATACTTCTGCACATCAGCTTTTTCGTCTTTAATGCACTTGCGGTAAAGGGCGTTTCAGCTCTCTCTGGTGGCAGTCGATCAGTGTTTTCCAAGAAAGAAAATGCCACTGCAGTTCTCCTTGTTGCAAGCCAGAAAACCCTGCCCGTAATGGTGGCTGTTGTTGAGCAACTTGGTGGTGCACTGGGAGAATCCGGTTTACTTGTTCTTCCTTGTGTTGCAGCACACTTAAATCAGATTATCATGGACTCGTTTCTTGTAAACTTCTGGCTTCGGAAGGACCTCTCAACCAACAGTAGAAAGGTATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF_like

Protein Analysis

418

Amino Acids

44.68

Weight (kDa)

10.14

Isoelectric Point (pI)

31.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF_like	PF13593	89 - 404	1.3e-46	SBF-like CPA transporter family (DUF4137)
SBF	PF01758	147 - 294	1.8e-13	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56160 AT3G56160 AT3G56160 AT3G56160 AT3G56160
fragaria_vesca	FvH4_7g05590 FvH4_7g05870
malus_domestica	MD02G1255900.v1.1 MD02G1256100.v1.1 MD02G1256200.v1.1
prunus_persica	Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1
pyrus_communis	pycom02g21680
rosa_chinensis	RchiOBHm_Chr1g0332541 RchiOBHm_Chr1g0332551 RchiOBHm_Chr1g0332571
rosa_laevigata	RLG00000029655 RLG00000029664
rosa_multiflora	Rmu_sc0004413.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318140
rosa_rugosa	Rorug01G0101700
rosa_samantha	Rh1AG126400 Rh1BG096200 Rh1CG120300 Rh1DG130500 Rh2AG156400 Rh4CG087600
rosa_wichuraiana	Rw0G002580 Rw1G010190 Rw1G010690 Rw6G006930 Rw6G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	873
AccII	CGCG	1 cut(s)	98
AciI	CCGC	6 cut(s)	5, 42, 96, 103, 124, 986
AclWI	GGATC	1 cut(s)	745
AcsI	RAATTY	3 cut(s)	244, 350, 648
AcuI	CTGAAG	1 cut(s)	772
AfiI	CCNNNNNNNGG	2 cut(s)	202, 317
AgsI	TTSAA	3 cut(s)	109, 223, 509
AjnI	CCWGG	1 cut(s)	887
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
Alw21I	GWGCWC	1 cut(s)	1126
Alw26I	GTCTC	3 cut(s)	329, 457, 737
Alw44I	GTGCAC	1 cut(s)	1122
AlwI	GGATC	1 cut(s)	745
AoxI	GGCC	1 cut(s)	428
ApaLI	GTGCAC	1 cut(s)	1122
ApeKI	GCWGC	7 cut(s)	52, 126, 413, 416, 502, 718, 1163
ApoI	RAATTY	3 cut(s)	244, 350, 648
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	2 cut(s)	885, 1222
AsuHPI	GGTGA	3 cut(s)	56, 185, 223
AsuII	TTCGAA	1 cut(s)	134
AvaII	GGWCC	2 cut(s)	885, 1222
BaeGI	GKGCMC	1 cut(s)	1126
Bbv12I	GWGCWC	1 cut(s)	1126
BbvI	GCAGC	7 cut(s)	39, 138, 403, 425, 514, 730, 1175
BccI	CCATC	4 cut(s)	20, 167, 683, 898
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	1 cut(s)	889
BciVI	GTATCC	1 cut(s)	864
BclI	TGATCA	1 cut(s)	811
BcoDI	GTCTC	3 cut(s)	329, 457, 737
BfaI	CTAG	3 cut(s)	312, 449, 860
BfmI	CTRYAG	3 cut(s)	417, 500, 1053
BfoI	RGCGCY	1 cut(s)	581
BfuAI	ACCTGC	1 cut(s)	873
BfuI	GTATCC	1 cut(s)	864
BisI	GCNGC	9 cut(s)	53, 96, 124, 127, 414, 417, 503, 719, 1164
BlsI	GCNGC	9 cut(s)	54, 97, 125, 128, 415, 418, 504, 720, 1165
Bme1390I	CCNGG	1 cut(s)	889
Bme18I	GGWCC	2 cut(s)	885, 1222
BmgT120I	GGNCC	2 cut(s)	885, 1222
BmiI	GGNNCC	3 cut(s)	10, 71, 598
BmrFI	CCNGG	1 cut(s)	889
BmrI	ACTGGG	1 cut(s)	1136
BmuI	ACTGGG	1 cut(s)	1136
BpmI	CTGGAG	2 cut(s)	420, 900
Bpu10I	CCTNAGC	1 cut(s)	271
Bpu14I	TTCGAA	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	498
BsaAI	YACGTR	1 cut(s)	336
BsaBI	GATNNNNATC	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	866
BsaWI	WCCGGW	2 cut(s)	819, 1136
BsaXI	ACNNNNNCTCC	4 cut(s)	393, 423, 684, 714
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 317
Bse118I	RCCGGY	2 cut(s)	66, 195
Bse1I	ACTGG	3 cut(s)	403, 917, 1131
Bse3DI	GCAATG	1 cut(s)	627
Bse8I	GATNNNNATC	1 cut(s)	371
BseBI	CCWGG	1 cut(s)	889
BseDI	CCNNGG	1 cut(s)	866
BseGI	GGATG	1 cut(s)	12
BseJI	GATNNNNATC	1 cut(s)	371
BseLI	CCNNNNNNNGG	2 cut(s)	202, 317
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	4 cut(s)	393, 599, 853, 868
BseNI	ACTGG	3 cut(s)	403, 917, 1131
BseSI	GKGCMC	1 cut(s)	1126
BseXI	GCAGC	7 cut(s)	39, 138, 403, 425, 514, 730, 1175
BsgI	GTGCAG	1 cut(s)	938
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	1126
BsiSI	CCGG	5 cut(s)	67, 196, 594, 820, 1137
BslI	CCNNNNNNNGG	2 cut(s)	202, 317
BsmAI	GTCTC	3 cut(s)	329, 457, 737
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	430
Bsp119I	TTCGAA	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	1126
Bsp143I	GATC	4 cut(s)	163, 750, 811, 1022
Bsp19I	CCATGG	1 cut(s)	866
BspACI	CCGC	6 cut(s)	5, 42, 96, 103, 124, 986
BspANI	GGCC	1 cut(s)	430
BspCNI	CTCAG	4 cut(s)	392, 598, 852, 867
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	3 cut(s)	10, 71, 598
BspMAI	CTGCAG	3 cut(s)	421, 504, 1057
BspMI	ACCTGC	1 cut(s)	873
BspPI	GGATC	1 cut(s)	745
BspQI	GCTCTTC	1 cut(s)	209
BspT104I	TTCGAA	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	627
BsrFI	RCCGGY	2 cut(s)	66, 195
BsrI	ACTGG	3 cut(s)	403, 917, 1131
BssAI	RCCGGY	2 cut(s)	66, 195
BssECI	CCNNGG	1 cut(s)	866
BssMI	GATC	4 cut(s)	163, 750, 811, 1022
BssT1I	CCWWGG	1 cut(s)	866
Bst2UI	CCWGG	1 cut(s)	889
Bst4CI	ACNGT	2 cut(s)	628, 1238
Bst6I	CTCTTC	1 cut(s)	209
BstBAI	YACGTR	1 cut(s)	336
BstBI	TTCGAA	1 cut(s)	134
BstC8I	GCNNGC	4 cut(s)	151, 534, 591, 1072
BstDEI	CTNAG	8 cut(s)	119, 271, 379, 585, 714, 834, 839, 854
BstDSI	CCRYGG	1 cut(s)	866
BstENI	CCTNNNNNAGG	1 cut(s)	315
BstF5I	GGATG	1 cut(s)	12
BstFNI	CGCG	1 cut(s)	98
BstH2I	RGCGCY	1 cut(s)	581
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	4 cut(s)	166, 753, 814, 1025
BstMAI	GTCTC	3 cut(s)	329, 457, 737
BstMBI	GATC	4 cut(s)	163, 750, 811, 1022
BstMWI	GCNNNNNNNGC	4 cut(s)	422, 502, 586, 605
BstNI	CCWGG	1 cut(s)	889
BstNSI	RCATGY	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	887
BstSFI	CTRYAG	3 cut(s)	417, 500, 1053
BstSLI	GKGCMC	1 cut(s)	1126
BstSNI	TACGTA	1 cut(s)	336
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	7 cut(s)	39, 138, 403, 425, 514, 730, 1175
BsuI	GTATCC	1 cut(s)	864
BsuRI	GGCC	1 cut(s)	430
BtgI	CCRYGG	1 cut(s)	866
BtsCI	GGATG	1 cut(s)	12
BtsI	GCAGTG	2 cut(s)	893, 1050
BtsIMutI	CAGTG	6 cut(s)	396, 847, 893, 1032, 1050, 1124
BveI	ACCTGC	1 cut(s)	873
Cac8I	GCNNGC	4 cut(s)	151, 534, 591, 1072
CfoI	GCGC	1 cut(s)	580
Cfr10I	RCCGGY	2 cut(s)	66, 195
Cfr13I	GGNCC	2 cut(s)	885, 1222
CspCI	CAANNNNNGTGG	2 cut(s)	555, 590
CviAII	CATG	4 cut(s)	92, 426, 867, 1186
DdeI	CTNAG	8 cut(s)	119, 271, 379, 585, 714, 834, 839, 854
DpnI	GATC	4 cut(s)	165, 752, 813, 1024
DpnII	GATC	4 cut(s)	163, 750, 811, 1022
DraI	TTTAAA	1 cut(s)	727
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
Eco105I	TACGTA	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	866
Eco47I	GGWCC	2 cut(s)	885, 1222
Eco57I	CTGAAG	1 cut(s)	772
EcoNI	CCTNNNNNAGG	1 cut(s)	315
EcoO109I	RGGNCCY	1 cut(s)	1222
EcoRII	CCWGG	1 cut(s)	887
EcoT14I	CCWWGG	1 cut(s)	866
ErhI	CCWWGG	1 cut(s)	866
FaeI	CATG	4 cut(s)	95, 429, 870, 1189
FaiI	YATR	9 cut(s)	89, 93, 427, 475, 551, 671, 683, 868, 1187
FatI	CATG	4 cut(s)	91, 425, 866, 1185
FauI	CCCGC	1 cut(s)	49
FbaI	TGATCA	1 cut(s)	811
Fnu4HI	GCNGC	9 cut(s)	53, 96, 124, 127, 414, 417, 503, 719, 1164
Fsp4HI	GCNGC	9 cut(s)	53, 96, 124, 127, 414, 417, 503, 719, 1164
FspBI	CTAG	3 cut(s)	312, 449, 860
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	9 cut(s)	53, 96, 124, 127, 414, 417, 503, 719, 1164
GsuI	CTGGAG	2 cut(s)	420, 900
HaeII	RGCGCY	1 cut(s)	581
HaeIII	GGCC	1 cut(s)	430
HapII	CCGG	5 cut(s)	67, 196, 594, 820, 1137
HhaI	GCGC	1 cut(s)	580
Hin1II	CATG	4 cut(s)	95, 429, 870, 1189
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HindIII	AAGCTT	1 cut(s)	824
HinfI	GANTC	3 cut(s)	782, 1133, 1190
HpaII	CCGG	5 cut(s)	67, 196, 594, 820, 1137
HphI	GGTGA	3 cut(s)	56, 185, 223
Hpy166II	GTNNAC	4 cut(s)	387, 1124, 1142, 1204
Hpy188I	TCNGA	6 cut(s)	168, 437, 711, 791, 1179, 1218
Hpy188III	TCNNGA	3 cut(s)	515, 779, 1251
Hpy8I	GTNNAC	4 cut(s)	387, 1124, 1142, 1204
HpyAV	CCTTC	2 cut(s)	796, 1213
HpyCH4III	ACNGT	2 cut(s)	628, 1238
HpyCH4IV	ACGT	1 cut(s)	335
HpyF10VI	GCNNNNNNNGC	4 cut(s)	422, 502, 586, 605
HpyF3I	CTNAG	8 cut(s)	119, 271, 379, 585, 714, 834, 839, 854
HpySE526I	ACGT	1 cut(s)	335
Hsp92II	CATG	4 cut(s)	95, 429, 870, 1189
HspAI	GCGC	1 cut(s)	578
Ksp22I	TGATCA	1 cut(s)	811
Kzo9I	GATC	4 cut(s)	163, 750, 811, 1022
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	2 cut(s)	75, 596
Lsp1109I	GCAGC	7 cut(s)	39, 138, 403, 425, 514, 730, 1175
MaeI	CTAG	3 cut(s)	312, 449, 860
MaeII	ACGT	1 cut(s)	335
MaeIII	GTNAC	1 cut(s)	891
MalI	GATC	4 cut(s)	165, 752, 813, 1024
MboI	GATC	4 cut(s)	163, 750, 811, 1022
MboII	GAAGA	5 cut(s)	226, 257, 781, 841, 1142
MhlI	GDGCHC	1 cut(s)	1126
MluCI	AATT	9 cut(s)	24, 223, 244, 259, 350, 405, 601, 648, 654
MlyI	GAGTC	1 cut(s)	1184
MmeI	TCCRAC	2 cut(s)	415, 734
MnlI	CCTC	9 cut(s)	201, 477, 521, 522, 765, 785, 863, 924, 1235
MseI	TTAA	5 cut(s)	653, 726, 909, 975, 1172
MspA1I	CMGCKG	2 cut(s)	416, 721
MspI	CCGG	5 cut(s)	67, 196, 594, 820, 1137
MspR9I	CCNGG	1 cut(s)	889
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	889
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	4 cut(s)	422, 502, 586, 605
NcoI	CCATGG	1 cut(s)	866
NdeII	GATC	4 cut(s)	163, 750, 811, 1022
NlaIII	CATG	4 cut(s)	95, 429, 870, 1189
NlaIV	GGNNCC	3 cut(s)	10, 71, 598
NmuCI	GTSAC	1 cut(s)	891
NspI	RCATGY	1 cut(s)	95
NspV	TTCGAA	1 cut(s)	134
PciSI	GCTCTTC	1 cut(s)	209
PctI	GAATGC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	782, 1133
PkrI	GCNGC	9 cut(s)	54, 97, 125, 128, 415, 418, 504, 720, 1165
PleI	GAGTC	1 cut(s)	1184
PpsI	GAGTC	1 cut(s)	1184
Ppu21I	YACGTR	1 cut(s)	336
PpuMI	RGGWCCY	1 cut(s)	1222
Psp5II	RGGWCCY	1 cut(s)	1222
Psp6I	CCWGG	1 cut(s)	887
PspGI	CCWGG	1 cut(s)	887
PspN4I	GGNNCC	3 cut(s)	10, 71, 598
PspPI	GGNCC	2 cut(s)	885, 1222
PspPPI	RGGWCCY	1 cut(s)	1222
PstI	CTGCAG	3 cut(s)	421, 504, 1057
PvuII	CAGCTG	2 cut(s)	416, 721
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	5 cut(s)	653, 726, 909, 975, 1172
SatI	GCNGC	9 cut(s)	53, 96, 124, 127, 414, 417, 503, 719, 1164
Sau3AI	GATC	4 cut(s)	163, 750, 811, 1022
Sau96I	GGNCC	2 cut(s)	885, 1222
SchI	GAGTC	1 cut(s)	1184
ScrFI	CCNGG	1 cut(s)	889
SduI	GDGCHC	1 cut(s)	1126
SfcI	CTRYAG	3 cut(s)	417, 500, 1053
SfuI	TTCGAA	1 cut(s)	134
SinI	GGWCC	2 cut(s)	885, 1222
SmlI	CTYRAG	1 cut(s)	513
SmoI	CTYRAG	1 cut(s)	513
SnaBI	TACGTA	1 cut(s)	336
Sse9I	AATT	9 cut(s)	24, 223, 244, 259, 350, 405, 601, 648, 654
SsiI	CCGC	6 cut(s)	5, 42, 96, 103, 124, 986
SspI	AATATT	2 cut(s)	441, 492
SspMI	CTAG	3 cut(s)	312, 449, 860
StyD4I	CCNGG	1 cut(s)	887
StyI	CCWWGG	1 cut(s)	866
TaaI	ACNGT	2 cut(s)	628, 1238
TaiI	ACGT	1 cut(s)	338
TaqI	TCGA	6 cut(s)	115, 134, 242, 482, 778, 1021
TasI	AATT	9 cut(s)	24, 223, 244, 259, 350, 405, 601, 648, 654
TauI	GCSGC	2 cut(s)	98, 126
TfiI	GAWTC	2 cut(s)	782, 1133
Tru1I	TTAA	5 cut(s)	653, 726, 909, 975, 1172
Tru9I	TTAA	5 cut(s)	653, 726, 909, 975, 1172
TscAI	CASTG	6 cut(s)	403, 847, 900, 1032, 1057, 1131
TseFI	GTSAC	1 cut(s)	891
TseI	GCWGC	7 cut(s)	52, 126, 413, 416, 502, 718, 1163
Tsp45I	GTSAC	1 cut(s)	891
TspDTI	ATGAA	1 cut(s)	670
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	6 cut(s)	403, 847, 900, 1032, 1057, 1131
VneI	GTGCAC	1 cut(s)	1122
VpaK11BI	GGWCC	2 cut(s)	885, 1222
XagI	CCTNNNNNAGG	1 cut(s)	315
XapI	RAATTY	3 cut(s)	244, 350, 648
XceI	RCATGY	1 cut(s)	95
XspI	CTAG	3 cut(s)	312, 449, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.