Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003648

Physical Location & Seq

Genomic Coordinates Forward (+)

30827103 .. 30831029

Gene Structure 3927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1256100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCCCACCAACAGCAACTTGATTTTCTGGCGTACGAGATAGATTTTTCAGTCTATGGCGGGAACCATCCAAGCCCTGATTCTCACGCCCCGACCCGCCAACCCGCCAACCCGCTGCCGTTTGCTCACCGACTCCCACATTTTCCGTCCAAACATGCCGCATTCCGCTTCGATCTTCAACTTAACCGCTGTATCTCGAATCCCGTCAAAGCCTGGCAACACCCCGATCAGAAAGATGGCAATGGAATCAAGAGGCATTCGGGTTCGGTTAAGGGCTTGAATTGGGCTAAACCTTTGTCGAATTTTGTTGCGAATAATTTTCTTTCCTTAGTTCTTGTTGGTGGAGCAGCTTTAGGGCTTGCAAACCCTAGTTTAGGTTGTCTTGCTGATTCATACTCTTTCACAAAAGTCAGCACATTTGGGGTTTTTATCATCTCAGGGTTGACATTGCAAACTGGAGAAATTTTTGAAGCTGCAGAAGCATGGCCTGTCGGAATCTTTGGGCTAGTCTCCATTCTATTATTTACTCCATGTTTTTCGAGGGCAATATTGCAACTGCCGCTCCAACCTAAAGAGTTTGTTAGAGGGCTTGCACTATTTTGCTGTATGCCAACCACATTATCAGTTGCAGTGGCGCTTACTCAGCTTGCTGGAGGCAATTCTGCCCTTGCTCTTGCAATGACTTTGAGCTCTAACGTGTTGGGAATTTTAGTTGTCCCATTTTCTATATCAAAATTTGTAGCTGACGGATTTGGCGTATCTGTTCCAACTAAGCAGCTATTCAAAAGTCTCGTTCTCACATTGTTGATCCCTCTGATATTGGGGAAGATTTGTCGAGAATCCTTAAGAGGTGAGTATCCTTCTCTCTGTTCCAGAAGTTTTCTTAATTCTAGGATATTTTTGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF_like

Protein Analysis

303

Amino Acids

32.67

Weight (kDa)

9.26

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF_like	PF13593	109 - 282	7.1e-30	SBF-like CPA transporter family (DUF4137)
SBF	PF01758	148 - 284	5.3e-14	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56160 AT3G56160 AT3G56160 AT3G56160 AT3G56160
fragaria_vesca	FvH4_7g05590 FvH4_7g05870
malus_domestica	MD02G1255900.v1.1 MD02G1256100.v1.1 MD02G1256200.v1.1
prunus_persica	Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1
pyrus_communis	pycom02g21680
rosa_chinensis	RchiOBHm_Chr1g0332541 RchiOBHm_Chr1g0332551 RchiOBHm_Chr1g0332571
rosa_laevigata	RLG00000029655 RLG00000029664
rosa_multiflora	Rmu_sc0004413.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318140
rosa_rugosa	Rorug01G0101700
rosa_samantha	Rh1AG126400 Rh1BG096200 Rh1CG120300 Rh1DG130500 Rh2AG156400 Rh4CG087600
rosa_wichuraiana	Rw0G002580 Rw1G010190 Rw1G010690 Rw6G006930 Rw6G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	562
AciI	CCGC	8 cut(s)	60, 97, 105, 113, 159, 166, 187, 560
AclWI	GGATC	1 cut(s)	802
AcsI	RAATTY	4 cut(s)	301, 462, 705, 734
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	374
AflII	CTTAAG	1 cut(s)	844
AflIII	ACRYGT	1 cut(s)	696
AgsI	TTSAA	4 cut(s)	179, 280, 470, 784
AjnI	CCWGG	1 cut(s)	212
AjuI	GAANNNNNNNTTGG	2 cut(s)	64, 96
AluBI	AGCT	6 cut(s)	350, 473, 646, 690, 743, 778
AluI	AGCT	6 cut(s)	350, 473, 646, 690, 743, 778
Alw21I	GWGCWC	1 cut(s)	692
Alw26I	GTCTC	2 cut(s)	514, 794
AlwI	GGATC	1 cut(s)	802
AoxI	GGCC	2 cut(s)	3, 485
ApeKI	GCWGC	4 cut(s)	115, 347, 473, 775
ApoI	RAATTY	4 cut(s)	301, 462, 705, 734
AspLEI	GCGC	1 cut(s)	637
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	119, 863
BaeI	ACNNNNGTAYC	2 cut(s)	175, 208
BanII	GRGCYC	1 cut(s)	692
Bbv12I	GWGCWC	1 cut(s)	692
BbvI	GCAGC	4 cut(s)	102, 359, 460, 787
BccI	CCATC	2 cut(s)	75, 230
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	1 cut(s)	214
BciVI	GTATCC	1 cut(s)	867
BcoDI	GTCTC	2 cut(s)	514, 794
BfaI	CTAG	3 cut(s)	369, 506, 891
BfmI	CTRYAG	1 cut(s)	474
BfoI	RGCGCY	1 cut(s)	638
BfrI	CTTAAG	1 cut(s)	844
BfuI	GTATCC	1 cut(s)	867
BisI	GCNGC	6 cut(s)	116, 159, 348, 474, 560, 776
BlsI	GCNGC	6 cut(s)	117, 160, 349, 475, 561, 777
Bme1390I	CCNGG	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	65
BmrFI	CCNGG	1 cut(s)	214
BpmI	CTGGAG	2 cut(s)	477, 672
BsaXI	ACNNNNNCTCC	2 cut(s)	546, 576
Bsc4I	CCNNNNNNNGG	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	460
Bse3DI	GCAATG	3 cut(s)	247, 446, 684
BseBI	CCWGG	1 cut(s)	214
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	1 cut(s)	374
BseMI	GCAATG	3 cut(s)	247, 446, 684
BseMII	CTCAG	2 cut(s)	450, 656
BseNI	ACTGG	1 cut(s)	460
BseXI	GCAGC	4 cut(s)	102, 359, 460, 787
BshFI	GGCC	2 cut(s)	5, 487
BsiHKAI	GWGCWC	1 cut(s)	692
BsiWI	CGTACG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	701
BslI	CCNNNNNNNGG	1 cut(s)	374
BsmAI	GTCTC	2 cut(s)	514, 794
BsmFI	GGGAC	1 cut(s)	701
BsmI	GAATGC	2 cut(s)	161, 256
BsnI	GGCC	2 cut(s)	5, 487
Bsp1286I	GDGCHC	1 cut(s)	692
Bsp143I	GATC	3 cut(s)	172, 226, 807
BspACI	CCGC	8 cut(s)	60, 97, 105, 113, 159, 166, 187, 560
BspANI	GGCC	2 cut(s)	5, 487
BspCNI	CTCAG	2 cut(s)	449, 655
BspLI	GGNNCC	1 cut(s)	65
BspMAI	CTGCAG	1 cut(s)	478
BspPI	GGATC	1 cut(s)	802
BspTI	CTTAAG	1 cut(s)	844
BsrBI	CCGCTC	1 cut(s)	562
BsrDI	GCAATG	3 cut(s)	247, 446, 684
BsrI	ACTGG	1 cut(s)	460
BssMI	GATC	3 cut(s)	172, 226, 807
Bst2UI	CCWGG	1 cut(s)	214
BstAFI	CTTAAG	1 cut(s)	844
BstC8I	GCNNGC	3 cut(s)	360, 591, 648
BstDEI	CTNAG	4 cut(s)	328, 436, 642, 771
BstENI	CCTNNNNNAGG	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	67
BstH2I	RGCGCY	1 cut(s)	638
BstHHI	GCGC	1 cut(s)	637
BstKTI	GATC	3 cut(s)	175, 229, 810
BstMAI	GTCTC	2 cut(s)	514, 794
BstMBI	GATC	3 cut(s)	172, 226, 807
BstMWI	GCNNNNNNNGC	3 cut(s)	479, 559, 643
BstNI	CCWGG	1 cut(s)	214
BstNSI	RCATGY	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	474
BstV1I	GCAGC	4 cut(s)	102, 359, 460, 787
BsuI	GTATCC	1 cut(s)	867
BsuRI	GGCC	2 cut(s)	5, 487
BtsCI	GGATG	1 cut(s)	67
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	1 cut(s)	636
Cac8I	GCNNGC	3 cut(s)	360, 591, 648
CfoI	GCGC	1 cut(s)	637
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	3 cut(s)	155, 483, 531
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	4 cut(s)	328, 436, 642, 771
DpnI	GATC	3 cut(s)	174, 228, 809
DpnII	GATC	3 cut(s)	172, 226, 807
Ecl136II	GAGCTC	1 cut(s)	690
Eco24I	GRGCYC	1 cut(s)	692
Eco53kI	GAGCTC	1 cut(s)	690
EcoICRI	GAGCTC	1 cut(s)	690
EcoNI	CCTNNNNNAGG	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	212
EcoT38I	GRGCYC	1 cut(s)	692
FaeI	CATG	3 cut(s)	158, 486, 534
FaiI	YATR	7 cut(s)	57, 156, 394, 484, 532, 608, 728
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	3 cut(s)	154, 482, 530
FauI	CCCGC	4 cut(s)	53, 104, 112, 120
Fnu4HI	GCNGC	6 cut(s)	116, 159, 348, 474, 560, 776
FokI	GGATG	1 cut(s)	54
FriOI	GRGCYC	1 cut(s)	692
Fsp4HI	GCNGC	6 cut(s)	116, 159, 348, 474, 560, 776
FspBI	CTAG	3 cut(s)	369, 506, 891
GlaI	GCGC	1 cut(s)	636
GluI	GCNGC	6 cut(s)	116, 159, 348, 474, 560, 776
GsuI	CTGGAG	2 cut(s)	477, 672
HaeII	RGCGCY	1 cut(s)	638
HaeIII	GGCC	2 cut(s)	5, 487
HhaI	GCGC	1 cut(s)	637
Hin1II	CATG	3 cut(s)	158, 486, 534
Hin6I	GCGC	1 cut(s)	635
HinP1I	GCGC	1 cut(s)	635
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HinfI	GANTC	7 cut(s)	80, 132, 199, 246, 389, 495, 839
HphI	GGTGA	2 cut(s)	119, 863
Hpy166II	GTNNAC	1 cut(s)	444
Hpy188I	TCNGA	3 cut(s)	231, 494, 816
Hpy188III	TCNNGA	4 cut(s)	196, 250, 836, 873
Hpy8I	GTNNAC	1 cut(s)	444
HpyAV	CCTTC	1 cut(s)	870
HpyCH4IV	ACGT	1 cut(s)	696
HpyCH4V	TGCA	7 cut(s)	362, 451, 476, 553, 593, 629, 677
HpyF10VI	GCNNNNNNNGC	3 cut(s)	479, 559, 643
HpyF3I	CTNAG	4 cut(s)	328, 436, 642, 771
HpySE526I	ACGT	1 cut(s)	696
Hsp92II	CATG	3 cut(s)	158, 486, 534
HspAI	GCGC	1 cut(s)	635
Kzo9I	GATC	3 cut(s)	172, 226, 807
LmnI	GCTCC	2 cut(s)	344, 567
LpnPI	CCDG	9 cut(s)	14, 90, 199, 226, 423, 441, 501, 636, 886
Lsp1109I	GCAGC	4 cut(s)	102, 359, 460, 787
MaeI	CTAG	3 cut(s)	369, 506, 891
MaeII	ACGT	1 cut(s)	696
MalI	GATC	3 cut(s)	174, 228, 809
MbiI	CCGCTC	1 cut(s)	562
MboI	GATC	3 cut(s)	172, 226, 807
MboII	GAAGA	2 cut(s)	167, 838
MhlI	GDGCHC	1 cut(s)	692
MluCI	AATT	8 cut(s)	280, 301, 316, 462, 658, 705, 734, 886
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	3 cut(s)	472, 589, 791
MnlI	CCTC	6 cut(s)	246, 534, 578, 647, 822, 842
MseI	TTAA	4 cut(s)	183, 270, 845, 885
MspA1I	CMGCKG	2 cut(s)	115, 189
MspCI	CTTAAG	1 cut(s)	844
MspR9I	CCNGG	1 cut(s)	214
Mva1269I	GAATGC	2 cut(s)	161, 256
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	3 cut(s)	479, 559, 643
NdeII	GATC	3 cut(s)	172, 226, 807
NlaIII	CATG	3 cut(s)	158, 486, 534
NlaIV	GGNNCC	1 cut(s)	65
NspI	RCATGY	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	753
PctI	GAATGC	2 cut(s)	161, 256
PfeI	GAWTC	6 cut(s)	80, 199, 246, 389, 495, 839
Pfl23II	CGTACG	1 cut(s)	33
PkrI	GCNGC	6 cut(s)	117, 160, 349, 475, 561, 777
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	692
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PspLI	CGTACG	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	65
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	478
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SacI	GAGCTC	1 cut(s)	692
SaqAI	TTAA	4 cut(s)	183, 270, 845, 885
SatI	GCNGC	6 cut(s)	116, 159, 348, 474, 560, 776
Sau3AI	GATC	3 cut(s)	172, 226, 807
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	692
SfcI	CTRYAG	1 cut(s)	474
SmlI	CTYRAG	1 cut(s)	844
SmoI	CTYRAG	1 cut(s)	844
Sse9I	AATT	8 cut(s)	280, 301, 316, 462, 658, 705, 734, 886
SsiI	CCGC	8 cut(s)	60, 97, 105, 113, 159, 166, 187, 560
SspI	AATATT	1 cut(s)	549
SspMI	CTAG	3 cut(s)	369, 506, 891
SstI	GAGCTC	1 cut(s)	692
StyD4I	CCNGG	1 cut(s)	212
TaiI	ACGT	1 cut(s)	699
TaqI	TCGA	5 cut(s)	171, 197, 299, 539, 835
TasI	AATT	8 cut(s)	280, 301, 316, 462, 658, 705, 734, 886
TauI	GCSGC	2 cut(s)	161, 562
TfiI	GAWTC	6 cut(s)	80, 199, 246, 389, 495, 839
Tru1I	TTAA	4 cut(s)	183, 270, 845, 885
Tru9I	TTAA	4 cut(s)	183, 270, 845, 885
TscAI	CASTG	1 cut(s)	636
TseI	GCWGC	4 cut(s)	115, 347, 473, 775
TspDTI	ATGAA	1 cut(s)	381
TspGWI	ACGGA	2 cut(s)	135, 762
TspRI	CASTG	1 cut(s)	636
Vha464I	CTTAAG	1 cut(s)	844
XagI	CCTNNNNNAGG	1 cut(s)	372
XapI	RAATTY	4 cut(s)	301, 462, 705, 734
XceI	RCATGY	1 cut(s)	158
XspI	CTAG	3 cut(s)	369, 506, 891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.