Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003648

Physical Location & Seq

Genomic Coordinates Forward (+)

44027735 .. 44036251

Gene Structure 8517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00318140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGTTGTGATACTGGGAGAGCTGGAGCGAGTGTTAACAGTAGATGGTAATGGAAACAAAGCTGATAAACATTCCAGTTCGCTGAAGCGCTTGGATTGGGCTAAACCATTGTCAAATTTCGTGGCGAATAATTTTCTTCCTTTAGCTCTTGTTAGTGGAGTGACGTTAGGGTTTGCGTATCCAAGCCTAGGTTGTCTTGCTAATTCATACTCTTTGTCAAAATTTTCCGCATTCGGGATTTTTATCATCTCAGGGTTAACCTTGCGCACTGGCGAAATTATTGCAGCTGCAGAGGCATGGCCTGTTGGAATCTTCGGGCTACTCCAACCTCAAGAATTTGTTAGAGGGCTTGCAATATTTTGCTGCATGCCAACTACGTTATCAAGTGGAGTGGCGCTTACTCAGCTAGCTGGGGCCAATTCTGCTCTTGCTCTCGCAATGACTGTCATCTCTAATCTGTTGGGAATTTTGATTGTCCCATTTTCTGTATCAAAATTCATAGCTGATGGAGCTGGTTTATCTGTTCCAACTAAGCAGCTGTTCAAAAGTCTTTTTGTCACATTATTGATCCCCTTAATCTTGGGGAAGATTTTTCGAGAATCTTTTGAAGGTGTTGCAGACTTCGTTGATCAGAACCGTAAAAAACTTTCCAAGATCAGTGCAATCCTCCTCAGTTTATTCCTCCAAGCCACATCTGTGGTTGAAGATCTACCTTTGCTATCTCCTCAATTTGTATTTGCACTTGCCTGTTGGTACTCCGTCAAGTGTGAAGTCTTTATGGACCTCAGTTATGGAAAGGTGCCATGGATGCAAGTTAGCAGGTCAAGGTCACTGCTGCTGATGGTTAAGCCTGCAGTTTTTCTTGGGGCCGTTGGAATGGGAGTGTCCAATATCATTGTGAATCCACTACTGCATCTCATCTTGTTAGCCTTTAATGCTGTTGCTGTTAAGAGCCTCTCAGCTCTGTCTGGTGGTAGTCAATCTGTTTTTTCCAAGAAGGAAAATGCAAATGCTGTTCTCCTTGTTGCAAGCCAGAAAACACTGCCTGTAATGGTGGCTGTGGTGGACCAACTAGGTGGTGCACTTGGTGAATCTGGTTTACTTGTTCTTCCTTGTGTTGCAGCACATTTAAATCAGATTATTCTGGACTCTATTCTTGTAAATTACTGGCTTCGCAAAGATCTCCCAACCAACAATGCCAAGGTATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF_like

Protein Analysis

403

Amino Acids

42.91

Weight (kDa)

9.18

Isoelectric Point (pI)

29.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF_like	PF13593	109 - 390	4.1e-28	SBF-like CPA transporter family (DUF4137)
SBF	PF01758	110 - 229	1.1e-14	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56160 AT3G56160 AT3G56160 AT3G56160 AT3G56160
fragaria_vesca	FvH4_7g05590 FvH4_7g05870
malus_domestica	MD02G1255900.v1.1 MD02G1256100.v1.1 MD02G1256200.v1.1
prunus_persica	Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1
pyrus_communis	pycom02g21680
rosa_chinensis	RchiOBHm_Chr1g0332541 RchiOBHm_Chr1g0332551 RchiOBHm_Chr1g0332571
rosa_laevigata	RLG00000029655 RLG00000029664
rosa_multiflora	Rmu_sc0004413.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318140
rosa_rugosa	Rorug01G0101700
rosa_samantha	Rh1AG126400 Rh1BG096200 Rh1CG120300 Rh1DG130500 Rh2AG156400 Rh4CG087600
rosa_wichuraiana	Rw0G002580 Rw1G010190 Rw1G010690 Rw6G006930 Rw6G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	266
Acc36I	ACCTGC	1 cut(s)	810
AccB1I	GGYRCC	1 cut(s)	799
AciI	CCGC	1 cut(s)	228
AclWI	GGATC	1 cut(s)	562
AcsI	RAATTY	5 cut(s)	115, 221, 335, 465, 494
AcuI	CTGAAG	1 cut(s)	104
AdeI	CACNNNGTG	1 cut(s)	1088
AfaI	GTAC	1 cut(s)	755
AfeI	AGCGCT	1 cut(s)	89
AfiI	CCNNNNNNNGG	2 cut(s)	188, 234
AgsI	TTSAA	3 cut(s)	544, 608, 704
AleI	CACNNNNGTG	1 cut(s)	695
Alw21I	GWGCWC	1 cut(s)	1084
Alw44I	GTGCAC	1 cut(s)	1080
AlwI	GGATC	1 cut(s)	562
Aor51HI	AGCGCT	1 cut(s)	89
AoxI	GGCC	3 cut(s)	299, 414, 867
ApaLI	GTGCAC	1 cut(s)	1080
ApeKI	GCWGC	6 cut(s)	284, 287, 363, 535, 835, 1121
ApoI	RAATTY	5 cut(s)	115, 221, 335, 465, 494
AspA2I	CCTAGG	1 cut(s)	187
AspLEI	GCGC	3 cut(s)	90, 267, 397
AspS9I	GGNCC	4 cut(s)	414, 781, 867, 1066
AsuHPI	GGTGA	1 cut(s)	1100
AsuNHI	GCTAGC	1 cut(s)	406
AvaII	GGWCC	2 cut(s)	781, 1066
AvrII	CCTAGG	1 cut(s)	187
BaeGI	GKGCMC	1 cut(s)	1084
BanI	GGYRCC	1 cut(s)	799
Bbv12I	GWGCWC	1 cut(s)	1084
BbvI	GCAGC	6 cut(s)	274, 296, 350, 547, 822, 1133
BccI	CCATC	3 cut(s)	38, 500, 835
BceAI	ACGGC	1 cut(s)	854
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BciVI	GTATCC	1 cut(s)	189
BclI	TGATCA	1 cut(s)	628
BfaI	CTAG	3 cut(s)	188, 407, 1073
BfmI	CTRYAG	2 cut(s)	288, 852
BfoI	RGCGCY	2 cut(s)	91, 398
BfuAI	ACCTGC	1 cut(s)	810
BfuI	GTATCC	1 cut(s)	189
BglII	AGATCT	2 cut(s)	706, 1180
BisI	GCNGC	6 cut(s)	285, 288, 364, 536, 836, 1122
BlnI	CCTAGG	1 cut(s)	187
BlsI	GCNGC	6 cut(s)	286, 289, 365, 537, 837, 1123
Bme18I	GGWCC	2 cut(s)	781, 1066
BmgT120I	GGNCC	4 cut(s)	414, 781, 867, 1066
BmiI	GGNNCC	3 cut(s)	415, 801, 868
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	2 cut(s)	798, 922
BmtI	GCTAGC	1 cut(s)	410
BmuI	ACTGGG	1 cut(s)	23
BpmI	CTGGAG	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	315
BsaBI	GATNNNNATC	1 cut(s)	242
BsaJI	CCNNGG	3 cut(s)	187, 803, 1200
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 234
Bse1I	ACTGG	4 cut(s)	18, 75, 274, 1172
Bse3DI	GCAATG	1 cut(s)	444
Bse8I	GATNNNNATC	1 cut(s)	242
BseDI	CCNNGG	3 cut(s)	187, 803, 1200
BseGI	GGATG	1 cut(s)	813
BseJI	GATNNNNATC	1 cut(s)	242
BseLI	CCNNNNNNNGG	2 cut(s)	188, 234
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	5 cut(s)	264, 416, 685, 799, 972
BseNI	ACTGG	4 cut(s)	18, 75, 274, 1172
BseRI	GAGGAG	2 cut(s)	659, 714
BseSI	GKGCMC	1 cut(s)	1084
BseXI	GCAGC	6 cut(s)	274, 296, 350, 547, 822, 1133
BseYI	CCCAGC	1 cut(s)	410
BshFI	GGCC	3 cut(s)	301, 416, 869
BshNI	GGYRCC	1 cut(s)	799
BsiHKAI	GWGCWC	1 cut(s)	1084
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	2 cut(s)	188, 234
BsmFI	GGGAC	1 cut(s)	461
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	3 cut(s)	301, 416, 869
Bsp1286I	GDGCHC	1 cut(s)	1084
Bsp143I	GATC	5 cut(s)	567, 628, 654, 706, 1180
Bsp19I	CCATGG	1 cut(s)	803
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	3 cut(s)	301, 416, 869
BspCNI	CTCAG	5 cut(s)	263, 415, 684, 798, 971
BspHI	TCATGA	1 cut(s)	1208
BspLI	GGNNCC	3 cut(s)	415, 801, 868
BspMAI	CTGCAG	2 cut(s)	292, 856
BspMI	ACCTGC	1 cut(s)	810
BspOI	GCTAGC	1 cut(s)	410
BspPI	GGATC	1 cut(s)	562
BspT107I	GGYRCC	1 cut(s)	799
BsrDI	GCAATG	1 cut(s)	444
BsrI	ACTGG	4 cut(s)	18, 75, 274, 1172
BssECI	CCNNGG	3 cut(s)	187, 803, 1200
BssMI	GATC	5 cut(s)	567, 628, 654, 706, 1180
BssT1I	CCWWGG	3 cut(s)	187, 803, 1200
Bst4CI	ACNGT	3 cut(s)	40, 445, 638
BstC8I	GCNNGC	5 cut(s)	351, 368, 408, 852, 1030
BstDEI	CTNAG	6 cut(s)	250, 402, 531, 671, 785, 958
BstDSI	CCRYGG	1 cut(s)	803
BstF5I	GGATG	1 cut(s)	813
BstH2I	RGCGCY	2 cut(s)	91, 398
BstHHI	GCGC	3 cut(s)	90, 267, 397
BstKTI	GATC	5 cut(s)	570, 631, 657, 709, 1183
BstMBI	GATC	5 cut(s)	567, 628, 654, 706, 1180
BstMWI	GCNNNNNNNGC	6 cut(s)	293, 403, 422, 509, 808, 935
BstNSI	RCATGY	1 cut(s)	370
BstSFI	CTRYAG	2 cut(s)	288, 852
BstSLI	GKGCMC	1 cut(s)	1084
BstV1I	GCAGC	6 cut(s)	274, 296, 350, 547, 822, 1133
BstX2I	RGATCY	2 cut(s)	706, 1180
BstXI	CCANNNNNNTGG	2 cut(s)	697, 1076
BstYI	RGATCY	2 cut(s)	706, 1180
BsuI	GTATCC	1 cut(s)	189
BsuRI	GGCC	3 cut(s)	301, 416, 869
BtgI	CCRYGG	1 cut(s)	803
BtsCI	GGATG	1 cut(s)	813
BtsI	GCAGTG	2 cut(s)	830, 1040
BtsIMutI	CAGTG	4 cut(s)	267, 664, 830, 1040
BveI	ACCTGC	1 cut(s)	810
Cac8I	GCNNGC	5 cut(s)	351, 368, 408, 852, 1030
CciI	TCATGA	1 cut(s)	1208
CfoI	GCGC	3 cut(s)	90, 267, 397
Cfr13I	GGNCC	4 cut(s)	414, 781, 867, 1066
Csp6I	GTAC	1 cut(s)	754
CspCI	CAANNNNNGTGG	4 cut(s)	102, 137, 372, 407
CviAII	CATG	4 cut(s)	297, 367, 804, 1209
CviQI	GTAC	1 cut(s)	754
DdeI	CTNAG	6 cut(s)	250, 402, 531, 671, 785, 958
DpnI	GATC	5 cut(s)	569, 630, 656, 708, 1182
DpnII	GATC	5 cut(s)	567, 628, 654, 706, 1180
DraI	TTTAAA	1 cut(s)	1131
DraIII	CACNNNGTG	1 cut(s)	1088
Eco130I	CCWWGG	3 cut(s)	187, 803, 1200
Eco47I	GGWCC	2 cut(s)	781, 1066
Eco47III	AGCGCT	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	104
EcoT14I	CCWWGG	3 cut(s)	187, 803, 1200
ErhI	CCWWGG	3 cut(s)	187, 803, 1200
FaeI	CATG	4 cut(s)	300, 370, 807, 1212
FaiI	YATR	8 cut(s)	208, 298, 368, 500, 779, 792, 805, 1210
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	4 cut(s)	296, 366, 803, 1208
FbaI	TGATCA	1 cut(s)	628
Fnu4HI	GCNGC	6 cut(s)	285, 288, 364, 536, 836, 1122
FokI	GGATG	1 cut(s)	820
Fsp4HI	GCNGC	6 cut(s)	285, 288, 364, 536, 836, 1122
FspBI	CTAG	3 cut(s)	188, 407, 1073
FspI	TGCGCA	1 cut(s)	266
GlaI	GCGC	3 cut(s)	89, 266, 396
GluI	GCNGC	6 cut(s)	285, 288, 364, 536, 836, 1122
GsaI	CCCAGC	1 cut(s)	414
GsuI	CTGGAG	1 cut(s)	44
HaeII	RGCGCY	2 cut(s)	91, 398
HaeIII	GGCC	3 cut(s)	301, 416, 869
HhaI	GCGC	3 cut(s)	90, 267, 397
Hin1II	CATG	4 cut(s)	300, 370, 807, 1212
Hin6I	GCGC	3 cut(s)	88, 265, 395
HinP1I	GCGC	3 cut(s)	88, 265, 395
HincII	GTYRAC	2 cut(s)	36, 258
HindII	GTYRAC	2 cut(s)	36, 258
HinfI	GANTC	5 cut(s)	309, 599, 901, 1091, 1148
HpaI	GTTAAC	2 cut(s)	36, 258
HphI	GGTGA	1 cut(s)	1100
Hpy166II	GTNNAC	5 cut(s)	36, 258, 1066, 1082, 1100
Hpy188I	TCNGA	2 cut(s)	633, 1137
Hpy188III	TCNNGA	5 cut(s)	235, 332, 596, 1145, 1209
Hpy8I	GTNNAC	5 cut(s)	36, 258, 1066, 1082, 1100
HpyAV	CCTTC	2 cut(s)	602, 991
HpyCH4III	ACNGT	3 cut(s)	40, 445, 638
HpyCH4IV	ACGT	2 cut(s)	164, 377
HpyF10VI	GCNNNNNNNGC	6 cut(s)	293, 403, 422, 509, 808, 935
HpyF3I	CTNAG	6 cut(s)	250, 402, 531, 671, 785, 958
HpySE526I	ACGT	2 cut(s)	164, 377
Hsp92II	CATG	4 cut(s)	300, 370, 807, 1212
HspAI	GCGC	3 cut(s)	88, 265, 395
Ksp22I	TGATCA	1 cut(s)	628
KspAI	GTTAAC	2 cut(s)	36, 258
Kzo9I	GATC	5 cut(s)	567, 628, 654, 706, 1180
LmnI	GCTCC	2 cut(s)	25, 509
Lsp1109I	GCAGC	6 cut(s)	274, 296, 350, 547, 822, 1133
LweI	GCATC	2 cut(s)	798, 922
MaeI	CTAG	3 cut(s)	188, 407, 1073
MaeII	ACGT	2 cut(s)	164, 377
MaeIII	GTNAC	3 cut(s)	160, 556, 828
MalI	GATC	5 cut(s)	569, 630, 656, 708, 1182
MboI	GATC	5 cut(s)	567, 628, 654, 706, 1180
MboII	GAAGA	5 cut(s)	128, 304, 598, 716, 1100
MflI	RGATCY	2 cut(s)	706, 1180
MhlI	GDGCHC	1 cut(s)	1084
MlyI	GAGTC	1 cut(s)	1142
MmeI	TCCRAC	4 cut(s)	286, 349, 551, 853
MnlI	CCTC	9 cut(s)	286, 338, 339, 677, 680, 692, 735, 794, 965
MseI	TTAA	7 cut(s)	35, 257, 575, 846, 933, 948, 1130
MslI	CAYNNNNRTG	1 cut(s)	695
MspA1I	CMGCKG	2 cut(s)	287, 538
Mva1269I	GAATGC	1 cut(s)	230
MwoI	GCNNNNNNNGC	6 cut(s)	293, 403, 422, 509, 808, 935
NcoI	CCATGG	1 cut(s)	803
NdeII	GATC	5 cut(s)	567, 628, 654, 706, 1180
NheI	GCTAGC	1 cut(s)	406
NlaIII	CATG	4 cut(s)	300, 370, 807, 1212
NlaIV	GGNNCC	3 cut(s)	415, 801, 868
NmuCI	GTSAC	3 cut(s)	160, 556, 828
NsbI	TGCGCA	1 cut(s)	266
NspI	RCATGY	1 cut(s)	370
OliI	CACNNNNGTG	1 cut(s)	695
PaeI	GCATGC	1 cut(s)	370
PagI	TCATGA	1 cut(s)	1208
PctI	GAATGC	1 cut(s)	230
PfeI	GAWTC	4 cut(s)	309, 599, 901, 1091
PkrI	GCNGC	6 cut(s)	286, 289, 365, 537, 837, 1123
PleI	GAGTC	1 cut(s)	1142
PpsI	GAGTC	1 cut(s)	1142
PspFI	CCCAGC	1 cut(s)	410
PspN4I	GGNNCC	3 cut(s)	415, 801, 868
PspPI	GGNCC	4 cut(s)	414, 781, 867, 1066
PstI	CTGCAG	2 cut(s)	292, 856
PsuI	RGATCY	2 cut(s)	706, 1180
PvuII	CAGCTG	2 cut(s)	287, 538
RsaI	GTAC	1 cut(s)	755
RsaNI	GTAC	1 cut(s)	754
RseI	CAYNNNNRTG	1 cut(s)	695
SaqAI	TTAA	7 cut(s)	35, 257, 575, 846, 933, 948, 1130
SatI	GCNGC	6 cut(s)	285, 288, 364, 536, 836, 1122
Sau3AI	GATC	5 cut(s)	567, 628, 654, 706, 1180
Sau96I	GGNCC	4 cut(s)	414, 781, 867, 1066
SchI	GAGTC	1 cut(s)	1142
SduI	GDGCHC	1 cut(s)	1084
SfaNI	GCATC	2 cut(s)	798, 922
SfcI	CTRYAG	2 cut(s)	288, 852
SinI	GGWCC	2 cut(s)	781, 1066
SmiI	ATTTAAAT	1 cut(s)	1131
SmiMI	CAYNNNNRTG	1 cut(s)	695
SmlI	CTYRAG	1 cut(s)	330
SmoI	CTYRAG	1 cut(s)	330
SphI	GCATGC	1 cut(s)	370
SsiI	CCGC	1 cut(s)	228
SspI	AATATT	1 cut(s)	357
SspMI	CTAG	3 cut(s)	188, 407, 1073
StyI	CCWWGG	3 cut(s)	187, 803, 1200
SwaI	ATTTAAAT	1 cut(s)	1131
TaaI	ACNGT	3 cut(s)	40, 445, 638
TaiI	ACGT	2 cut(s)	167, 380
TaqI	TCGA	1 cut(s)	595
TfiI	GAWTC	4 cut(s)	309, 599, 901, 1091
Tru1I	TTAA	7 cut(s)	35, 257, 575, 846, 933, 948, 1130
Tru9I	TTAA	7 cut(s)	35, 257, 575, 846, 933, 948, 1130
TscAI	CASTG	4 cut(s)	274, 664, 837, 1047
TseFI	GTSAC	3 cut(s)	160, 556, 828
TseI	GCWGC	6 cut(s)	284, 287, 363, 535, 835, 1121
Tsp45I	GTSAC	3 cut(s)	160, 556, 828
TspDTI	ATGAA	2 cut(s)	195, 487
TspGWI	ACGGA	1 cut(s)	748
TspRI	CASTG	4 cut(s)	274, 664, 837, 1047
VneI	GTGCAC	1 cut(s)	1080
VpaK11BI	GGWCC	2 cut(s)	781, 1066
XapI	RAATTY	5 cut(s)	115, 221, 335, 465, 494
XceI	RCATGY	1 cut(s)	370
XmaJI	CCTAGG	1 cut(s)	187
XspI	CTAG	3 cut(s)	188, 407, 1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.