Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003648

Physical Location & Seq

Genomic Coordinates Reverse (-)

27239083 .. 27247901

Gene Structure 8819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG130500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGCGGGAATCATCCAAACCCTAGTTCTCACACCTCCGCCCACTAAAATCCTGTCCTTCTCTCACCGATTCTCCTGTTCTCCGTCCAATCACGCCGCATTCCGTTTCAATTTCCGTTTCAGCCGCTCCAATTCGAGACCCGTCCGAGCCTGCCACCACTCCGATCAGGTAGATGGTAATGGAAACAAAGCTGATAAGCATTCCGGTTCCCTCAAGGGCTTGGATTGGGCTAAACCATTGTCGAATTTCGTGGCGAATAATTTTCTTCCTTTAGCTCTTGTTGGTGGAGTGACGTTAGGGTTTGCGTATCCAAGCCTAGGTTGTCTTGCTGATTCATACTCTTTGTCAAAATTTTCCACGTTCGGGATTTTTATCATCTCAGGGTTAACCTTGCACACTGGTGAAATTATTGCAGCTGCAGACGCATGGCCTGTTGGAATCTTCGGGCTAGTCTCCATTTTATTATTTACTCCATATTTTTCGAGGGTAATATTGCAACTGCAGCTCCAACCTCAAGAATTTGTTAGAGGGCTTGCAATATTTTGCTGCATGCCAACTACGTTATCAAGTGGAGTGGCGCTTACTCAGCTAGCTGGGGCCAATTCTGCTCTTGCTCTCGCAATGACTGTCATCTCTAATCTGTTGGGAATTTTGATTGTCCCATTTTCTTTATCAAAATTCATAGCTGATGGAGCTGGTTTATCTGTTCCAACTAAGCAGCTGTTCATAAGTCTTTTTCTCACATTATTGATCCCCCTAATCTTGGGGAAGATTTTTCGAGAATCTTTCGAAGGTGTTGCAGACTTCGTTGATCAGAACCGTAAAAAACTTTCCAAGATCAGTGCAATCCTCCTCAGTTTAGTGCCATGGATGCAAGTTAGCAGGTCAAGGTCACTGCTGCTGATGGTTAAGCCTGCAGTTTTTCTTGGGGCCGTTGGAATGGGAGTACTACTGCATCTCATCTTGTTAGCCTTTAATGCTGTTGCTGTCAAGAGCCTCTCAGCTCTTTCTGGTGGTAGTCAATCTGTTTTTTCCAAGAAGGAAAATGCAAATGCTGTTCTCCTCGTTGCAAGCCAGAAAACACTGCCTGTAATGGTGGCTGTGGTGGACCAACTAGGTGGTGCACTTGGTGAATCTGGTTTACTTGTTCTTCCTTGTGTTGCAGCACATTTAAATCAGATTATTCTCGACTCTATTCTTGTAAATTACTGGCTTGGCAAAGATCTCTCAACCAACAATGCCAAGGTATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF_like

Protein Analysis

417

Amino Acids

44.4

Weight (kDa)

9.65

Isoelectric Point (pI)

32.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF_like	PF13593	89 - 403	2e-45	SBF-like CPA transporter family (DUF4137)
SBF	PF01758	147 - 290	2e-13	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56160 AT3G56160 AT3G56160 AT3G56160 AT3G56160
fragaria_vesca	FvH4_7g05590 FvH4_7g05870
malus_domestica	MD02G1255900.v1.1 MD02G1256100.v1.1 MD02G1256200.v1.1
prunus_persica	Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1
pyrus_communis	pycom02g21680
rosa_chinensis	RchiOBHm_Chr1g0332541 RchiOBHm_Chr1g0332551 RchiOBHm_Chr1g0332571
rosa_laevigata	RLG00000029655 RLG00000029664
rosa_multiflora	Rmu_sc0004413.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318140
rosa_rugosa	Rorug01G0101700
rosa_samantha	Rh1AG126400 Rh1BG096200 Rh1CG120300 Rh1DG130500 Rh2AG156400 Rh4CG087600
rosa_wichuraiana	Rw0G002580 Rw1G010190 Rw1G010690 Rw6G006930 Rw6G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	873
AccBSI	CCGCTC	1 cut(s)	126
AciI	CCGC	4 cut(s)	5, 38, 96, 124
AclWI	GGATC	1 cut(s)	745
AcsI	RAATTY	5 cut(s)	244, 350, 518, 648, 677
AdeI	CACNNNGTG	1 cut(s)	1130
AfaI	GTAC	1 cut(s)	948
AfiI	CCNNNNNNNGG	3 cut(s)	317, 363, 763
AgsI	TTSAA	1 cut(s)	109
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AleI	CACNNNNGTG	1 cut(s)	399
Alw21I	GWGCWC	1 cut(s)	1126
Alw26I	GTCTC	2 cut(s)	130, 457
Alw44I	GTGCAC	1 cut(s)	1122
AlwI	GGATC	1 cut(s)	745
AoxI	GGCC	3 cut(s)	428, 597, 930
ApaLI	GTGCAC	1 cut(s)	1122
ApeKI	GCWGC	7 cut(s)	413, 416, 502, 546, 718, 898, 1163
ApoI	RAATTY	5 cut(s)	244, 350, 518, 648, 677
AspA2I	CCTAGG	1 cut(s)	316
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	3 cut(s)	597, 930, 1108
AsuHPI	GGTGA	3 cut(s)	56, 413, 1142
AsuII	TTCGAA	1 cut(s)	789
AsuNHI	GCTAGC	1 cut(s)	589
AvaII	GGWCC	1 cut(s)	1108
AvrII	CCTAGG	1 cut(s)	316
BaeGI	GKGCMC	1 cut(s)	1126
Bbv12I	GWGCWC	1 cut(s)	1126
BbvI	GCAGC	7 cut(s)	403, 425, 514, 533, 730, 885, 1175
BccI	CCATC	3 cut(s)	167, 683, 898
BceAI	ACGGC	1 cut(s)	917
BcgI	CGANNNNNNTGC	2 cut(s)	779, 813
BciVI	GTATCC	1 cut(s)	318
BclI	TGATCA	1 cut(s)	811
BcoDI	GTCTC	2 cut(s)	130, 457
BfaI	CTAG	5 cut(s)	23, 317, 449, 590, 1115
BfmI	CTRYAG	3 cut(s)	417, 500, 915
BfoI	RGCGCY	1 cut(s)	581
BfuAI	ACCTGC	1 cut(s)	873
BfuI	GTATCC	1 cut(s)	318
BglII	AGATCT	1 cut(s)	1222
BisI	GCNGC	9 cut(s)	96, 124, 414, 417, 503, 547, 719, 899, 1164
BlnI	CCTAGG	1 cut(s)	316
BlsI	GCNGC	9 cut(s)	97, 125, 415, 418, 504, 548, 720, 900, 1165
BmcAI	AGTACT	1 cut(s)	948
Bme18I	GGWCC	1 cut(s)	1108
BmgT120I	GGNCC	3 cut(s)	597, 930, 1108
BmiI	GGNNCC	3 cut(s)	208, 598, 931
BmsI	GCATC	2 cut(s)	861, 964
BmtI	GCTAGC	1 cut(s)	593
Bpu14I	TTCGAA	1 cut(s)	789
BpuEI	CTTGAG	2 cut(s)	197, 498
BsaBI	GATNNNNATC	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	3 cut(s)	316, 866, 1242
BsaWI	WCCGGW	1 cut(s)	203
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 489, 519
Bsc4I	CCNNNNNNNGG	3 cut(s)	317, 363, 763
Bse1I	ACTGG	2 cut(s)	403, 1214
Bse3DI	GCAATG	1 cut(s)	627
Bse8I	GATNNNNATC	1 cut(s)	371
BseDI	CCNNGG	3 cut(s)	316, 866, 1242
BseGI	GGATG	2 cut(s)	12, 876
BseJI	GATNNNNATC	1 cut(s)	371
BseLI	CCNNNNNNNGG	3 cut(s)	317, 363, 763
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	4 cut(s)	393, 599, 868, 1014
BseNI	ACTGG	2 cut(s)	403, 1214
BseRI	GAGGAG	2 cut(s)	842, 1052
BseSI	GKGCMC	1 cut(s)	1126
BseXI	GCAGC	7 cut(s)	403, 425, 514, 533, 730, 885, 1175
BseYI	CCCAGC	1 cut(s)	593
BshFI	GGCC	3 cut(s)	430, 599, 932
BsiHKAI	GWGCWC	1 cut(s)	1126
BsiSI	CCGG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	644
BslI	CCNNNNNNNGG	3 cut(s)	317, 363, 763
BsmAI	GTCTC	2 cut(s)	130, 457
BsmFI	GGGAC	1 cut(s)	644
BsmI	GAATGC	2 cut(s)	98, 199
BsnI	GGCC	3 cut(s)	430, 599, 932
Bso31I	GGTCTC	1 cut(s)	130
Bsp119I	TTCGAA	1 cut(s)	789
Bsp1286I	GDGCHC	1 cut(s)	1126
Bsp143I	GATC	5 cut(s)	163, 750, 811, 837, 1222
Bsp19I	CCATGG	1 cut(s)	866
BspACI	CCGC	4 cut(s)	5, 38, 96, 124
BspANI	GGCC	3 cut(s)	430, 599, 932
BspCNI	CTCAG	4 cut(s)	392, 598, 867, 1013
BspHI	TCATGA	1 cut(s)	1250
BspLI	GGNNCC	3 cut(s)	208, 598, 931
BspMAI	CTGCAG	3 cut(s)	421, 504, 919
BspMI	ACCTGC	1 cut(s)	873
BspOI	GCTAGC	1 cut(s)	593
BspPI	GGATC	1 cut(s)	745
BspT104I	TTCGAA	1 cut(s)	789
BspTNI	GGTCTC	1 cut(s)	130
BsrBI	CCGCTC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	627
BsrI	ACTGG	2 cut(s)	403, 1214
BssECI	CCNNGG	3 cut(s)	316, 866, 1242
BssMI	GATC	5 cut(s)	163, 750, 811, 837, 1222
BssT1I	CCWWGG	3 cut(s)	316, 866, 1242
Bst4CI	ACNGT	2 cut(s)	628, 821
BstBI	TTCGAA	1 cut(s)	789
BstC8I	GCNNGC	6 cut(s)	151, 534, 551, 591, 915, 1072
BstDEI	CTNAG	5 cut(s)	379, 585, 714, 854, 1000
BstDSI	CCRYGG	1 cut(s)	866
BstF5I	GGATG	2 cut(s)	12, 876
BstH2I	RGCGCY	1 cut(s)	581
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	5 cut(s)	166, 753, 814, 840, 1225
BstMAI	GTCTC	2 cut(s)	130, 457
BstMBI	GATC	5 cut(s)	163, 750, 811, 837, 1222
BstMWI	GCNNNNNNNGC	7 cut(s)	422, 502, 586, 605, 692, 871, 977
BstNSI	RCATGY	1 cut(s)	553
BstSFI	CTRYAG	3 cut(s)	417, 500, 915
BstSLI	GKGCMC	1 cut(s)	1126
BstV1I	GCAGC	7 cut(s)	403, 425, 514, 533, 730, 885, 1175
BstX2I	RGATCY	1 cut(s)	1222
BstXI	CCANNNNNNTGG	1 cut(s)	1118
BstYI	RGATCY	1 cut(s)	1222
BsuI	GTATCC	1 cut(s)	318
BsuRI	GGCC	3 cut(s)	430, 599, 932
BtgI	CCRYGG	1 cut(s)	866
BtsCI	GGATG	2 cut(s)	12, 876
BtsI	GCAGTG	2 cut(s)	893, 1082
BtsIMutI	CAGTG	4 cut(s)	396, 847, 893, 1082
BveI	ACCTGC	1 cut(s)	873
Cac8I	GCNNGC	6 cut(s)	151, 534, 551, 591, 915, 1072
CciI	TCATGA	1 cut(s)	1250
CfoI	GCGC	1 cut(s)	580
Cfr13I	GGNCC	3 cut(s)	597, 930, 1108
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	947
CspCI	CAANNNNNGTGG	2 cut(s)	555, 590
CviAII	CATG	4 cut(s)	426, 550, 867, 1251
CviQI	GTAC	1 cut(s)	947
DdeI	CTNAG	5 cut(s)	379, 585, 714, 854, 1000
DpnI	GATC	5 cut(s)	165, 752, 813, 839, 1224
DpnII	GATC	5 cut(s)	163, 750, 811, 837, 1222
DraI	TTTAAA	1 cut(s)	1173
DraIII	CACNNNGTG	1 cut(s)	1130
EciI	GGCGGA	1 cut(s)	27
Eco130I	CCWWGG	3 cut(s)	316, 866, 1242
Eco31I	GGTCTC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	1108
EcoT14I	CCWWGG	3 cut(s)	316, 866, 1242
ErhI	CCWWGG	3 cut(s)	316, 866, 1242
FaeI	CATG	4 cut(s)	429, 553, 870, 1254
FaiI	YATR	8 cut(s)	337, 427, 475, 551, 683, 728, 868, 1252
FaqI	GGGAC	1 cut(s)	644
FatI	CATG	4 cut(s)	425, 549, 866, 1250
FbaI	TGATCA	1 cut(s)	811
Fnu4HI	GCNGC	9 cut(s)	96, 124, 414, 417, 503, 547, 719, 899, 1164
FokI	GGATG	1 cut(s)	883
Fsp4HI	GCNGC	9 cut(s)	96, 124, 414, 417, 503, 547, 719, 899, 1164
FspBI	CTAG	5 cut(s)	23, 317, 449, 590, 1115
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	9 cut(s)	96, 124, 414, 417, 503, 547, 719, 899, 1164
GsaI	CCCAGC	1 cut(s)	597
HaeII	RGCGCY	1 cut(s)	581
HaeIII	GGCC	3 cut(s)	430, 599, 932
HapII	CCGG	1 cut(s)	204
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	1 cut(s)	580
Hin1II	CATG	4 cut(s)	429, 553, 870, 1254
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HinfI	GANTC	7 cut(s)	9, 69, 332, 438, 782, 1133, 1190
HpaI	GTTAAC	1 cut(s)	387
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	3 cut(s)	56, 413, 1142
Hpy166II	GTNNAC	4 cut(s)	387, 1108, 1124, 1142
Hpy188I	TCNGA	4 cut(s)	146, 163, 816, 1179
Hpy188III	TCNNGA	7 cut(s)	135, 364, 515, 779, 991, 1187, 1251
Hpy8I	GTNNAC	4 cut(s)	387, 1108, 1124, 1142
HpyAV	CCTTC	3 cut(s)	67, 785, 1033
HpyCH4III	ACNGT	2 cut(s)	628, 821
HpyCH4IV	ACGT	3 cut(s)	293, 359, 560
HpyF10VI	GCNNNNNNNGC	7 cut(s)	422, 502, 586, 605, 692, 871, 977
HpyF3I	CTNAG	5 cut(s)	379, 585, 714, 854, 1000
HpySE526I	ACGT	3 cut(s)	293, 359, 560
Hsp92II	CATG	4 cut(s)	429, 553, 870, 1254
HspAI	GCGC	1 cut(s)	578
Ksp22I	TGATCA	1 cut(s)	811
KspAI	GTTAAC	1 cut(s)	387
Kzo9I	GATC	5 cut(s)	163, 750, 811, 837, 1222
LmnI	GCTCC	3 cut(s)	131, 510, 692
Lsp1109I	GCAGC	7 cut(s)	403, 425, 514, 533, 730, 885, 1175
LweI	GCATC	2 cut(s)	861, 964
MaeI	CTAG	5 cut(s)	23, 317, 449, 590, 1115
MaeII	ACGT	3 cut(s)	293, 359, 560
MaeIII	GTNAC	2 cut(s)	289, 891
MalI	GATC	5 cut(s)	165, 752, 813, 839, 1224
MbiI	CCGCTC	1 cut(s)	126
MboI	GATC	5 cut(s)	163, 750, 811, 837, 1222
MboII	GAAGA	4 cut(s)	257, 433, 781, 1142
MflI	RGATCY	1 cut(s)	1222
MhlI	GDGCHC	1 cut(s)	1126
MlyI	GAGTC	1 cut(s)	1184
MmeI	TCCRAC	4 cut(s)	415, 532, 734, 916
MnlI	CCTC	9 cut(s)	45, 221, 477, 521, 522, 860, 863, 1007, 1073
MseI	TTAA	4 cut(s)	386, 909, 975, 1172
MslI	CAYNNNNRTG	1 cut(s)	399
MspA1I	CMGCKG	2 cut(s)	416, 721
MspI	CCGG	1 cut(s)	204
Mva1269I	GAATGC	2 cut(s)	98, 199
MwoI	GCNNNNNNNGC	7 cut(s)	422, 502, 586, 605, 692, 871, 977
NcoI	CCATGG	1 cut(s)	866
NdeII	GATC	5 cut(s)	163, 750, 811, 837, 1222
NheI	GCTAGC	1 cut(s)	589
NlaIII	CATG	4 cut(s)	429, 553, 870, 1254
NlaIV	GGNNCC	3 cut(s)	208, 598, 931
NmuCI	GTSAC	2 cut(s)	289, 891
NspI	RCATGY	1 cut(s)	553
NspV	TTCGAA	1 cut(s)	789
OliI	CACNNNNGTG	1 cut(s)	399
PaeI	GCATGC	1 cut(s)	553
PagI	TCATGA	1 cut(s)	1250
PctI	GAATGC	2 cut(s)	98, 199
PfeI	GAWTC	6 cut(s)	9, 69, 332, 438, 782, 1133
PkrI	GCNGC	9 cut(s)	97, 125, 415, 418, 504, 548, 720, 900, 1165
PleI	GAGTC	1 cut(s)	1184
PpsI	GAGTC	1 cut(s)	1184
PspFI	CCCAGC	1 cut(s)	593
PspN4I	GGNNCC	3 cut(s)	208, 598, 931
PspPI	GGNCC	3 cut(s)	597, 930, 1108
PstI	CTGCAG	3 cut(s)	421, 504, 919
PsuI	RGATCY	1 cut(s)	1222
PvuII	CAGCTG	2 cut(s)	416, 721
RsaI	GTAC	1 cut(s)	948
RsaNI	GTAC	1 cut(s)	947
RseI	CAYNNNNRTG	1 cut(s)	399
SaqAI	TTAA	4 cut(s)	386, 909, 975, 1172
SatI	GCNGC	9 cut(s)	96, 124, 414, 417, 503, 547, 719, 899, 1164
Sau3AI	GATC	5 cut(s)	163, 750, 811, 837, 1222
Sau96I	GGNCC	3 cut(s)	597, 930, 1108
ScaI	AGTACT	1 cut(s)	948
SchI	GAGTC	1 cut(s)	1184
SduI	GDGCHC	1 cut(s)	1126
SfaNI	GCATC	2 cut(s)	861, 964
SfcI	CTRYAG	3 cut(s)	417, 500, 915
SfuI	TTCGAA	1 cut(s)	789
SinI	GGWCC	1 cut(s)	1108
SmiI	ATTTAAAT	1 cut(s)	1173
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	2 cut(s)	212, 513
SmoI	CTYRAG	2 cut(s)	212, 513
SphI	GCATGC	1 cut(s)	553
SsiI	CCGC	4 cut(s)	5, 38, 96, 124
SspI	AATATT	2 cut(s)	492, 540
SspMI	CTAG	5 cut(s)	23, 317, 449, 590, 1115
StyI	CCWWGG	3 cut(s)	316, 866, 1242
SwaI	ATTTAAAT	1 cut(s)	1173
TaaI	ACNGT	2 cut(s)	628, 821
TaiI	ACGT	3 cut(s)	296, 362, 563
TaqI	TCGA	6 cut(s)	134, 242, 482, 778, 789, 1188
TatI	WGTACW	1 cut(s)	946
TauI	GCSGC	2 cut(s)	98, 126
TfiI	GAWTC	6 cut(s)	9, 69, 332, 438, 782, 1133
Tru1I	TTAA	4 cut(s)	386, 909, 975, 1172
Tru9I	TTAA	4 cut(s)	386, 909, 975, 1172
TscAI	CASTG	4 cut(s)	403, 847, 900, 1089
TseFI	GTSAC	2 cut(s)	289, 891
TseI	GCWGC	7 cut(s)	413, 416, 502, 546, 718, 898, 1163
Tsp45I	GTSAC	2 cut(s)	289, 891
TspDTI	ATGAA	3 cut(s)	324, 670, 715
TspGWI	ACGGA	3 cut(s)	72, 92, 104
TspRI	CASTG	4 cut(s)	403, 847, 900, 1089
VneI	GTGCAC	1 cut(s)	1122
VpaK11BI	GGWCC	1 cut(s)	1108
XapI	RAATTY	5 cut(s)	244, 350, 518, 648, 677
XceI	RCATGY	1 cut(s)	553
XmaJI	CCTAGG	1 cut(s)	316
XspI	CTAG	5 cut(s)	23, 317, 449, 590, 1115
ZrmI	AGTACT	1 cut(s)	948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.