Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003648

Physical Location & Seq

Genomic Coordinates Forward (+)

19908161 .. 19913991

Gene Structure 5831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g21680.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGCGGGAACCATCCAAGCCCTAATTCTCACACCCCCACCCGCCCAAACGCTGCCGTTTGCACACCGGCTTCCTCATTTTCCGTCCAAACATGCCGCGTTCCGCTTCAATCATCGACTTAGCCGCTGCATTTCGAACCCCGTCAAGGCCTGCCAACACCCCAATCAGAAAGATGGTAATGGAAACAAAGCTCACCGGCATTCGGCTCTTGTTGGTGGAGTAGCTTTAGGGATTGCAAATCCTAGTTTAGGTTGTCTCGCTGATACGTATTCTTTGTCAAAATTCAGCACATTTGGGATTTTTATCATCTCAGGGTTGACCTTGCACACTGGAGAAATTGTTGCAGCTGCAGAAGCATGGCCTGTCGGAATATTTGGGCTAGTCTCCATTCTATTATTTACTCCATATTTTTCGAGGGTAATATTGCAACTGCAGCTCCAACCTCAAGAGTTTGTTAGAGGGCTTGCACTATTTTGCTGTATGCCAACCACATTATCAAGTGGAGTGGCGCTTACTCAGCTTGCCGGAGCCAATTCTGCCCTTGCTCTTGCAATGACTGTGATTTCTAACCTGTTAGGAATTTTAATTGTCCCATTTTCTATATCAAAGTTCGTAGCTGATGGAGTTGGTGTATCTGTTCCAACTAAGCAGCTGTTTAAAAGTCTCGTTCTCACATTGTTGATCCCTCTAATCTTGGGGAAGATTTGTCGAGAATCCTTCAGAGGTGTCGCAGACTTTGTTGATCAAAACCGGAAGCTTTTTTCTAAGCTCAGTGCAATCTTCCTCAGTCTAGTGCCATGGATACAAGTTAGCAGGTCCAGGTCACTGCTGTTGATGGTTAAGCCTCCAGTTTTTCTTGTGGCTATTGGAATGGGAATACTTCTGCACATCAGCTTGTTCGTCTTTAATGCTCTTGCAGTAAAGGGTGTTTCAGCTCTCTCTGGTGGCAGTCGATCAGTGTTTTCCAAGAAAGAAAATGCCACTGCATTTCTCCTTGTTGCAAGCCAGAAAACTCTGCCCGTAATGGTGGCTGTTGTTGAGCAACTTGGTGGTGCGCTGGGAGAATCCGGTTTACTTGTTCTTCCTTGTGTTGCAGCGCACTTAAATCAGATCATTATGGACTCGTTTCTTGTAAACTTCTGGCTGCGGAAGGACCTCTCAACCAACAGTACAAAGGTATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF_like

Protein Analysis

395

Amino Acids

42.1

Weight (kDa)

10.04

Isoelectric Point (pI)

32.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56160 AT3G56160 AT3G56160 AT3G56160 AT3G56160
fragaria_vesca	FvH4_7g05590 FvH4_7g05870
malus_domestica	MD02G1255900.v1.1 MD02G1256100.v1.1 MD02G1256200.v1.1
prunus_persica	Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1
pyrus_communis	pycom02g21680
rosa_chinensis	RchiOBHm_Chr1g0332541 RchiOBHm_Chr1g0332551 RchiOBHm_Chr1g0332571
rosa_laevigata	RLG00000029655 RLG00000029664
rosa_multiflora	Rmu_sc0004413.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318140
rosa_rugosa	Rorug01G0101700
rosa_samantha	Rh1AG126400 Rh1BG096200 Rh1CG120300 Rh1DG130500 Rh2AG156400 Rh4CG087600
rosa_wichuraiana	Rw0G002580 Rw1G010190 Rw1G010690 Rw6G006930 Rw6G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	804
AccII	CGCG	1 cut(s)	98
AciI	CCGC	6 cut(s)	5, 42, 96, 103, 124, 1147
AclWI	GGATC	1 cut(s)	676
AcsI	RAATTY	2 cut(s)	281, 579
AcuI	CTGAAG	1 cut(s)	703
AfaI	GTAC	1 cut(s)	1171
AfiI	CCNNNNNNNGG	3 cut(s)	145, 202, 248
AgsI	TTSAA	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	818
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
Alw26I	GTCTC	3 cut(s)	260, 388, 668
AlwI	GGATC	1 cut(s)	676
AoxI	GGCC	2 cut(s)	147, 359
ApeKI	GCWGC	8 cut(s)	52, 126, 344, 347, 433, 649, 1094, 1144
ApoI	RAATTY	2 cut(s)	281, 579
AspLEI	GCGC	3 cut(s)	511, 1057, 1099
AspS9I	GGNCC	2 cut(s)	816, 1153
AsuHPI	GGTGA	1 cut(s)	185
AsuII	TTCGAA	1 cut(s)	134
AvaII	GGWCC	2 cut(s)	816, 1153
BaeI	ACNNNNGTAYC	1 cut(s)	1161
BbvI	GCAGC	8 cut(s)	39, 113, 334, 356, 445, 661, 1106, 1131
BccI	CCATC	4 cut(s)	20, 167, 614, 829
BceAI	ACGGC	1 cut(s)	40
BciT130I	CCWGG	1 cut(s)	820
BciVI	GTATCC	1 cut(s)	795
BclI	TGATCA	1 cut(s)	742
BcoDI	GTCTC	3 cut(s)	260, 388, 668
BfaI	CTAG	3 cut(s)	243, 380, 791
BfmI	CTRYAG	2 cut(s)	348, 431
BfoI	RGCGCY	1 cut(s)	512
BfuAI	ACCTGC	1 cut(s)	804
BfuI	GTATCC	1 cut(s)	795
Bme1390I	CCNGG	1 cut(s)	820
Bme18I	GGWCC	2 cut(s)	816, 1153
BmgT120I	GGNCC	2 cut(s)	816, 1153
BmiI	GGNNCC	2 cut(s)	10, 529
BmrFI	CCNGG	1 cut(s)	820
BpmI	CTGGAG	2 cut(s)	351, 831
Bpu14I	TTCGAA	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	429
BsaAI	YACGTR	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	797
BsaWI	WCCGGW	2 cut(s)	750, 1067
BsaXI	ACNNNNNCTCC	6 cut(s)	324, 354, 420, 450, 615, 645
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 202, 248
Bse118I	RCCGGY	2 cut(s)	66, 195
Bse1I	ACTGG	2 cut(s)	334, 848
Bse3DI	GCAATG	1 cut(s)	558
Bse8I	GATNNNNATC	1 cut(s)	302
BseBI	CCWGG	1 cut(s)	820
BseDI	CCNNGG	1 cut(s)	797
BseGI	GGATG	1 cut(s)	12
BseJI	GATNNNNATC	1 cut(s)	302
BseLI	CCNNNNNNNGG	3 cut(s)	145, 202, 248
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	4 cut(s)	324, 530, 784, 799
BseNI	ACTGG	2 cut(s)	334, 848
BseXI	GCAGC	8 cut(s)	39, 113, 334, 356, 445, 661, 1106, 1131
BseYI	CCCAGC	1 cut(s)	1057
BsgI	GTGCAG	1 cut(s)	869
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	2 cut(s)	149, 361
BsiSI	CCGG	5 cut(s)	67, 196, 525, 751, 1068
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	3 cut(s)	145, 202, 248
BsmAI	GTCTC	3 cut(s)	260, 388, 668
BsmFI	GGGAC	1 cut(s)	575
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	2 cut(s)	149, 361
Bsp119I	TTCGAA	1 cut(s)	134
Bsp143I	GATC	4 cut(s)	681, 742, 953, 1110
Bsp19I	CCATGG	1 cut(s)	797
BspACI	CCGC	6 cut(s)	5, 42, 96, 103, 124, 1147
BspANI	GGCC	2 cut(s)	149, 361
BspCNI	CTCAG	4 cut(s)	323, 529, 783, 798
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	2 cut(s)	10, 529
BspMAI	CTGCAG	2 cut(s)	352, 435
BspMI	ACCTGC	1 cut(s)	804
BspPI	GGATC	1 cut(s)	676
BspT104I	TTCGAA	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	558
BsrFI	RCCGGY	2 cut(s)	66, 195
BsrI	ACTGG	2 cut(s)	334, 848
BssAI	RCCGGY	2 cut(s)	66, 195
BssECI	CCNNGG	1 cut(s)	797
BssMI	GATC	4 cut(s)	681, 742, 953, 1110
BssT1I	CCWWGG	1 cut(s)	797
Bst2UI	CCWGG	1 cut(s)	820
Bst4CI	ACNGT	2 cut(s)	559, 1169
BstBAI	YACGTR	1 cut(s)	267
BstBI	TTCGAA	1 cut(s)	134
BstC8I	GCNNGC	4 cut(s)	151, 465, 522, 1003
BstDEI	CTNAG	7 cut(s)	119, 310, 516, 645, 765, 770, 785
BstDSI	CCRYGG	1 cut(s)	797
BstENI	CCTNNNNNAGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	12
BstFNI	CGCG	1 cut(s)	98
BstH2I	RGCGCY	1 cut(s)	512
BstHHI	GCGC	3 cut(s)	511, 1057, 1099
BstKTI	GATC	4 cut(s)	684, 745, 956, 1113
BstMAI	GTCTC	3 cut(s)	260, 388, 668
BstMBI	GATC	4 cut(s)	681, 742, 953, 1110
BstMWI	GCNNNNNNNGC	4 cut(s)	353, 433, 517, 536
BstNI	CCWGG	1 cut(s)	820
BstNSI	RCATGY	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	818
BstSFI	CTRYAG	2 cut(s)	348, 431
BstSNI	TACGTA	1 cut(s)	267
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	8 cut(s)	39, 113, 334, 356, 445, 661, 1106, 1131
BsuI	GTATCC	1 cut(s)	795
BsuRI	GGCC	2 cut(s)	149, 361
BtgI	CCRYGG	1 cut(s)	797
BtsCI	GGATG	1 cut(s)	12
BtsI	GCAGTG	2 cut(s)	824, 981
BtsIMutI	CAGTG	5 cut(s)	327, 778, 824, 963, 981
BveI	ACCTGC	1 cut(s)	804
Cac8I	GCNNGC	4 cut(s)	151, 465, 522, 1003
CfoI	GCGC	3 cut(s)	511, 1057, 1099
Cfr10I	RCCGGY	2 cut(s)	66, 195
Cfr13I	GGNCC	2 cut(s)	816, 1153
Csp6I	GTAC	1 cut(s)	1170
CspCI	CAANNNNNGTGG	2 cut(s)	486, 521
CviAII	CATG	3 cut(s)	92, 357, 798
CviQI	GTAC	1 cut(s)	1170
DdeI	CTNAG	7 cut(s)	119, 310, 516, 645, 765, 770, 785
DpnI	GATC	4 cut(s)	683, 744, 955, 1112
DpnII	GATC	4 cut(s)	681, 742, 953, 1110
DraI	TTTAAA	1 cut(s)	658
Eco105I	TACGTA	1 cut(s)	267
Eco130I	CCWWGG	1 cut(s)	797
Eco147I	AGGCCT	1 cut(s)	149
Eco47I	GGWCC	2 cut(s)	816, 1153
Eco57I	CTGAAG	1 cut(s)	703
EcoNI	CCTNNNNNAGG	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	1153
EcoRII	CCWGG	1 cut(s)	818
EcoT14I	CCWWGG	1 cut(s)	797
ErhI	CCWWGG	1 cut(s)	797
FaeI	CATG	3 cut(s)	95, 360, 801
FaiI	YATR	7 cut(s)	93, 358, 406, 482, 602, 799, 1118
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	3 cut(s)	91, 356, 797
FauI	CCCGC	1 cut(s)	49
FbaI	TGATCA	1 cut(s)	742
FspBI	CTAG	3 cut(s)	243, 380, 791
GlaI	GCGC	3 cut(s)	510, 1056, 1098
GsaI	CCCAGC	1 cut(s)	1061
GsuI	CTGGAG	2 cut(s)	351, 831
HaeII	RGCGCY	1 cut(s)	512
HaeIII	GGCC	2 cut(s)	149, 361
HapII	CCGG	5 cut(s)	67, 196, 525, 751, 1068
HhaI	GCGC	3 cut(s)	511, 1057, 1099
Hin1II	CATG	3 cut(s)	95, 360, 801
Hin6I	GCGC	3 cut(s)	509, 1055, 1097
HinP1I	GCGC	3 cut(s)	509, 1055, 1097
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HindIII	AAGCTT	1 cut(s)	755
HinfI	GANTC	3 cut(s)	713, 1064, 1121
HpaII	CCGG	5 cut(s)	67, 196, 525, 751, 1068
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	3 cut(s)	318, 1073, 1135
Hpy188I	TCNGA	4 cut(s)	168, 368, 722, 1110
Hpy188III	TCNNGA	3 cut(s)	446, 710, 1182
Hpy8I	GTNNAC	3 cut(s)	318, 1073, 1135
HpyAV	CCTTC	2 cut(s)	727, 1144
HpyCH4III	ACNGT	2 cut(s)	559, 1169
HpyCH4IV	ACGT	1 cut(s)	266
HpyF10VI	GCNNNNNNNGC	4 cut(s)	353, 433, 517, 536
HpyF3I	CTNAG	7 cut(s)	119, 310, 516, 645, 765, 770, 785
HpySE526I	ACGT	1 cut(s)	266
Hsp92II	CATG	3 cut(s)	95, 360, 801
HspAI	GCGC	3 cut(s)	509, 1055, 1097
Ksp22I	TGATCA	1 cut(s)	742
Kzo9I	GATC	4 cut(s)	681, 742, 953, 1110
LmnI	GCTCC	2 cut(s)	441, 527
Lsp1109I	GCAGC	8 cut(s)	39, 113, 334, 356, 445, 661, 1106, 1131
MaeI	CTAG	3 cut(s)	243, 380, 791
MaeII	ACGT	1 cut(s)	266
MaeIII	GTNAC	1 cut(s)	822
MalI	GATC	4 cut(s)	683, 744, 955, 1112
MboI	GATC	4 cut(s)	681, 742, 953, 1110
MboII	GAAGA	3 cut(s)	712, 772, 1073
MluCI	AATT	6 cut(s)	24, 281, 336, 532, 579, 585
MlyI	GAGTC	1 cut(s)	1115
MmeI	TCCRAC	3 cut(s)	346, 463, 665
MnlI	CCTC	9 cut(s)	84, 408, 452, 453, 696, 716, 794, 855, 1166
MseI	TTAA	5 cut(s)	584, 657, 840, 906, 1103
MspA1I	CMGCKG	3 cut(s)	126, 347, 652
MspI	CCGG	5 cut(s)	67, 196, 525, 751, 1068
MspR9I	CCNGG	1 cut(s)	820
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	820
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	4 cut(s)	353, 433, 517, 536
NcoI	CCATGG	1 cut(s)	797
NdeII	GATC	4 cut(s)	681, 742, 953, 1110
NlaIII	CATG	3 cut(s)	95, 360, 801
NlaIV	GGNNCC	2 cut(s)	10, 529
NmuCI	GTSAC	1 cut(s)	822
NspI	RCATGY	1 cut(s)	95
NspV	TTCGAA	1 cut(s)	134
PceI	AGGCCT	1 cut(s)	149
PctI	GAATGC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	713, 1064
PleI	GAGTC	1 cut(s)	1115
PpsI	GAGTC	1 cut(s)	1115
Ppu21I	YACGTR	1 cut(s)	267
PpuMI	RGGWCCY	1 cut(s)	1153
Psp5II	RGGWCCY	1 cut(s)	1153
Psp6I	CCWGG	1 cut(s)	818
PspFI	CCCAGC	1 cut(s)	1057
PspGI	CCWGG	1 cut(s)	818
PspN4I	GGNNCC	2 cut(s)	10, 529
PspPI	GGNCC	2 cut(s)	816, 1153
PspPPI	RGGWCCY	1 cut(s)	1153
PstI	CTGCAG	2 cut(s)	352, 435
PvuII	CAGCTG	2 cut(s)	347, 652
RsaI	GTAC	1 cut(s)	1171
RsaNI	GTAC	1 cut(s)	1170
SaqAI	TTAA	5 cut(s)	584, 657, 840, 906, 1103
Sau3AI	GATC	4 cut(s)	681, 742, 953, 1110
Sau96I	GGNCC	2 cut(s)	816, 1153
SchI	GAGTC	1 cut(s)	1115
ScrFI	CCNGG	1 cut(s)	820
SfcI	CTRYAG	2 cut(s)	348, 431
SfuI	TTCGAA	1 cut(s)	134
SinI	GGWCC	2 cut(s)	816, 1153
SmlI	CTYRAG	1 cut(s)	444
SmoI	CTYRAG	1 cut(s)	444
SnaBI	TACGTA	1 cut(s)	267
Sse9I	AATT	6 cut(s)	24, 281, 336, 532, 579, 585
SseBI	AGGCCT	1 cut(s)	149
SsiI	CCGC	6 cut(s)	5, 42, 96, 103, 124, 1147
SspI	AATATT	2 cut(s)	372, 423
SspMI	CTAG	3 cut(s)	243, 380, 791
StuI	AGGCCT	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	818
StyI	CCWWGG	1 cut(s)	797
TaaI	ACNGT	2 cut(s)	559, 1169
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	5 cut(s)	115, 134, 413, 709, 952
TasI	AATT	6 cut(s)	24, 281, 336, 532, 579, 585
TatI	WGTACW	1 cut(s)	1169
TauI	GCSGC	2 cut(s)	98, 126
TfiI	GAWTC	2 cut(s)	713, 1064
Tru1I	TTAA	5 cut(s)	584, 657, 840, 906, 1103
Tru9I	TTAA	5 cut(s)	584, 657, 840, 906, 1103
TscAI	CASTG	5 cut(s)	334, 778, 831, 963, 988
TseFI	GTSAC	1 cut(s)	822
TseI	GCWGC	8 cut(s)	52, 126, 344, 347, 433, 649, 1094, 1144
Tsp45I	GTSAC	1 cut(s)	822
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	5 cut(s)	334, 778, 831, 963, 988
VpaK11BI	GGWCC	2 cut(s)	816, 1153
XagI	CCTNNNNNAGG	1 cut(s)	246
XapI	RAATTY	2 cut(s)	281, 579
XceI	RCATGY	1 cut(s)	95
XspI	CTAG	3 cut(s)	243, 380, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.