Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003648

Physical Location & Seq

Genomic Coordinates Reverse (-)

22577247 .. 22593204

Gene Structure 15958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G010190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGCGGGAATCATCCAAACCCTAGTTCTCACACCTCCGCCACTCAAATCCTGTCCTTCTCTCACCGATTCTCCCGTTCTCCCGTCCAACCACGCCGCATTCCGTTTCTTTAGCCGCTCCAATTCCACACCCGTCCGAGCCTGCCACCACTCCGATCAGGTTCTTTTCTCTTCTTTTAATTTCTCTTGCTATGGTAATGGAAACAAAGCTGATAAGCACTCCGGTTCGCTCAAGGGCTTGGATTGGGCTAAACCATTGTCAAATTTCGTGGCGAATAATTTTCTTCCTTTAGCTCTTGTTGGTGGAGTGACGTTAGGGTTTGCGTATCCAAGCCTAGGTTGTCTTGCTGATTCATACTCTTTGTCAAAATTTTCCACATTCGGGATTTTTATCATCTCAGGGTTAACCTTGCACACTGGCGAAATTATTGCAGCTGCAGACGCATGGCCTGTTGGAATCTTCGGGCTAGTCTCCATTTTATTATTTACTCCATATTTTTCGAGGGTAATATTGCAACTGCAGCTCCAACCTCAAGAATTTGTTAGAGGGCTTGCAATATTTTGCTGCATGCCAACTACGTTATCAAGTGGAGTGGCGCTTACTCAGCTAGCTGGCGCCAATTCTGCTCTTGCACTCGCAATGACTGTCATCTCTAATCTGTTGGGAATTTTGATTGTCCCATTTTCTGTATCAAAATTCATAGTTGATGGAGCTGGTTTATCTGTTCCAACTAAGCAGCTGTTCAAAAGTCTTTTTCTCACATTATTGATTCCCCTAATCTTGGGGAAGATTTTTCGAGAATCTTTCGAAGGTGTTGCAGACTTCGTTGATCAGAACCGTAAAAAACTTTCCAAGATCAGTGCAATCCTCCTCAGTTTAGTGCCATGGATGCAAGTTAGCAGGTCAAGGTCAGTGCTGCTGATGGTTAAGCCTGCTGTTTTTCTTGGGGCCGTTGGAATGGGAGTACTACTGCATCTCATCTTGTTAGCCTTTAATGCTGTTGCCGTTAAAAGCCTCTCAGCTCTGTCTGGTGGTAGTGAATCAGTTTTTTCCAAGAAGGAAAATGCAAATGCTGTTGTCCTTGTTGCAAGCCAGAAAACACTGCCTGTAATGGTGGCTGTGGTGGACCAACTAGGTGGTGCACTTGGTGATGAATCTGGTTTACTTGTTCTTCCTTGCGTTGCAGCACATTTAAATCAGATTATTCTGGACTCTATTCTTGTAAATTACTGGCTTCGCAAAGATCTCCCAACCAACAATGCCAAGGTATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF_like

Protein Analysis

424

Amino Acids

45.08

Weight (kDa)

9.31

Isoelectric Point (pI)

34.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF_like	PF13593	95 - 411	3.3e-46	SBF-like CPA transporter family (DUF4137)
SBF	PF01758	153 - 298	1.1e-13	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56160 AT3G56160 AT3G56160 AT3G56160 AT3G56160
fragaria_vesca	FvH4_7g05590 FvH4_7g05870
malus_domestica	MD02G1255900.v1.1 MD02G1256100.v1.1 MD02G1256200.v1.1
prunus_persica	Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1
pyrus_communis	pycom02g21680
rosa_chinensis	RchiOBHm_Chr1g0332541 RchiOBHm_Chr1g0332551 RchiOBHm_Chr1g0332571
rosa_laevigata	RLG00000029655 RLG00000029664
rosa_multiflora	Rmu_sc0004413.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318140
rosa_rugosa	Rorug01G0101700
rosa_samantha	Rh1AG126400 Rh1BG096200 Rh1CG120300 Rh1DG130500 Rh2AG156400 Rh4CG087600
rosa_wichuraiana	Rw0G002580 Rw1G010190 Rw1G010690 Rw6G006930 Rw6G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	891
AccB1I	GGYRCC	1 cut(s)	614
AccBSI	CCGCTC	1 cut(s)	117
AciI	CCGC	4 cut(s)	5, 38, 96, 115
AcsI	RAATTY	5 cut(s)	262, 368, 536, 666, 695
AcyI	GRCGYC	1 cut(s)	615
AdeI	CACNNNGTG	1 cut(s)	1148
AfaI	GTAC	1 cut(s)	966
AfiI	CCNNNNNNNGG	3 cut(s)	335, 381, 781
AgsI	TTSAA	1 cut(s)	745
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AluBI	AGCT	9 cut(s)	209, 293, 434, 523, 607, 611, 713, 739, 1022
AluI	AGCT	9 cut(s)	209, 293, 434, 523, 607, 611, 713, 739, 1022
Alw21I	GWGCWC	1 cut(s)	1144
Alw26I	GTCTC	1 cut(s)	475
Alw44I	GTGCAC	1 cut(s)	1140
AoxI	GGCC	2 cut(s)	446, 948
ApaLI	GTGCAC	1 cut(s)	1140
ApeKI	GCWGC	7 cut(s)	431, 434, 520, 564, 736, 916, 1184
ApoI	RAATTY	5 cut(s)	262, 368, 536, 666, 695
AspA2I	CCTAGG	1 cut(s)	334
AspLEI	GCGC	2 cut(s)	598, 617
AspS9I	GGNCC	2 cut(s)	948, 1126
AsuHPI	GGTGA	2 cut(s)	55, 1160
AsuII	TTCGAA	1 cut(s)	807
AsuNHI	GCTAGC	1 cut(s)	607
AvaII	GGWCC	1 cut(s)	1126
AvrII	CCTAGG	1 cut(s)	334
BaeGI	GKGCMC	1 cut(s)	1144
BanI	GGYRCC	1 cut(s)	614
Bbv12I	GWGCWC	1 cut(s)	1144
BbvI	GCAGC	7 cut(s)	421, 443, 532, 551, 748, 903, 1196
BccI	CCATC	2 cut(s)	701, 916
BceAI	ACGGC	2 cut(s)	935, 989
BcgI	CGANNNNNNTGC	4 cut(s)	410, 444, 797, 831
BciVI	GTATCC	1 cut(s)	336
BclI	TGATCA	1 cut(s)	829
BcoDI	GTCTC	1 cut(s)	475
BfaI	CTAG	5 cut(s)	23, 335, 467, 608, 1133
BfmI	CTRYAG	2 cut(s)	435, 518
BfoI	RGCGCY	2 cut(s)	599, 618
BfuAI	ACCTGC	1 cut(s)	891
BfuI	GTATCC	1 cut(s)	336
BglII	AGATCT	1 cut(s)	1243
BisI	GCNGC	9 cut(s)	96, 115, 432, 435, 521, 565, 737, 917, 1185
BlnI	CCTAGG	1 cut(s)	334
BlsI	GCNGC	9 cut(s)	97, 116, 433, 436, 522, 566, 738, 918, 1186
BmcAI	AGTACT	1 cut(s)	966
Bme18I	GGWCC	1 cut(s)	1126
BmgT120I	GGNCC	2 cut(s)	948, 1126
BmiI	GGNNCC	2 cut(s)	616, 949
BmsI	GCATC	2 cut(s)	879, 982
BmtI	GCTAGC	1 cut(s)	611
Bpu14I	TTCGAA	1 cut(s)	807
BpuEI	CTTGAG	2 cut(s)	215, 516
BsaBI	GATNNNNATC	1 cut(s)	389
BsaHI	GRCGYC	1 cut(s)	615
BsaJI	CCNNGG	3 cut(s)	334, 884, 1263
BsaWI	WCCGGW	1 cut(s)	221
BsaXI	ACNNNNNCTCC	4 cut(s)	55, 85, 507, 537
Bsc4I	CCNNNNNNNGG	3 cut(s)	335, 381, 781
Bse1I	ACTGG	2 cut(s)	421, 1235
Bse3DI	GCAATG	1 cut(s)	645
Bse8I	GATNNNNATC	1 cut(s)	389
BseDI	CCNNGG	3 cut(s)	334, 884, 1263
BseGI	GGATG	2 cut(s)	12, 894
BseJI	GATNNNNATC	1 cut(s)	389
BseLI	CCNNNNNNNGG	3 cut(s)	335, 381, 781
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	4 cut(s)	411, 617, 886, 1032
BseNI	ACTGG	2 cut(s)	421, 1235
BseRI	GAGGAG	1 cut(s)	860
BseSI	GKGCMC	1 cut(s)	1144
BseXI	GCAGC	7 cut(s)	421, 443, 532, 551, 748, 903, 1196
BshFI	GGCC	2 cut(s)	448, 950
BshNI	GGYRCC	1 cut(s)	614
BsiHKAI	GWGCWC	1 cut(s)	1144
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	662
BslI	CCNNNNNNNGG	3 cut(s)	335, 381, 781
BsmAI	GTCTC	1 cut(s)	475
BsmFI	GGGAC	1 cut(s)	662
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	448, 950
Bsp119I	TTCGAA	1 cut(s)	807
Bsp1286I	GDGCHC	1 cut(s)	1144
Bsp143I	GATC	4 cut(s)	154, 829, 855, 1243
Bsp19I	CCATGG	1 cut(s)	884
BspACI	CCGC	4 cut(s)	5, 38, 96, 115
BspANI	GGCC	2 cut(s)	448, 950
BspCNI	CTCAG	4 cut(s)	410, 616, 885, 1031
BspHI	TCATGA	1 cut(s)	1271
BspLI	GGNNCC	2 cut(s)	616, 949
BspMAI	CTGCAG	2 cut(s)	439, 522
BspMI	ACCTGC	1 cut(s)	891
BspOI	GCTAGC	1 cut(s)	611
BspT104I	TTCGAA	1 cut(s)	807
BspT107I	GGYRCC	1 cut(s)	614
BsrBI	CCGCTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	645
BsrI	ACTGG	2 cut(s)	421, 1235
BssECI	CCNNGG	3 cut(s)	334, 884, 1263
BssMI	GATC	4 cut(s)	154, 829, 855, 1243
BssNI	GRCGYC	1 cut(s)	615
BssT1I	CCWWGG	3 cut(s)	334, 884, 1263
Bst4CI	ACNGT	2 cut(s)	646, 839
Bst6I	CTCTTC	1 cut(s)	175
BstACI	GRCGYC	1 cut(s)	615
BstBI	TTCGAA	1 cut(s)	807
BstC8I	GCNNGC	7 cut(s)	142, 552, 569, 609, 613, 933, 1090
BstDEI	CTNAG	5 cut(s)	397, 603, 732, 872, 1018
BstDSI	CCRYGG	1 cut(s)	884
BstF5I	GGATG	2 cut(s)	12, 894
BstH2I	RGCGCY	2 cut(s)	599, 618
BstHHI	GCGC	2 cut(s)	598, 617
BstKTI	GATC	4 cut(s)	157, 832, 858, 1246
BstMAI	GTCTC	1 cut(s)	475
BstMBI	GATC	4 cut(s)	154, 829, 855, 1243
BstMWI	GCNNNNNNNGC	6 cut(s)	440, 520, 604, 623, 889, 995
BstNSI	RCATGY	1 cut(s)	571
BstSFI	CTRYAG	2 cut(s)	435, 518
BstSLI	GKGCMC	1 cut(s)	1144
BstV1I	GCAGC	7 cut(s)	421, 443, 532, 551, 748, 903, 1196
BstX2I	RGATCY	1 cut(s)	1243
BstXI	CCANNNNNNTGG	1 cut(s)	1136
BstYI	RGATCY	1 cut(s)	1243
BsuI	GTATCC	1 cut(s)	336
BsuRI	GGCC	2 cut(s)	448, 950
BtgI	CCRYGG	1 cut(s)	884
BtsCI	GGATG	2 cut(s)	12, 894
BtsI	GCAGTG	1 cut(s)	1100
BtsIMutI	CAGTG	4 cut(s)	414, 865, 918, 1100
BveI	ACCTGC	1 cut(s)	891
Cac8I	GCNNGC	7 cut(s)	142, 552, 569, 609, 613, 933, 1090
CciI	TCATGA	1 cut(s)	1271
CfoI	GCGC	2 cut(s)	598, 617
Cfr13I	GGNCC	2 cut(s)	948, 1126
CseI	GACGC	1 cut(s)	449
Csp6I	GTAC	1 cut(s)	965
CspCI	CAANNNNNGTGG	4 cut(s)	249, 284, 573, 608
CviAII	CATG	4 cut(s)	444, 568, 885, 1272
CviQI	GTAC	1 cut(s)	965
DdeI	CTNAG	5 cut(s)	397, 603, 732, 872, 1018
DinI	GGCGCC	1 cut(s)	616
DpnI	GATC	4 cut(s)	156, 831, 857, 1245
DpnII	GATC	4 cut(s)	154, 829, 855, 1243
DraI	TTTAAA	1 cut(s)	1194
DraIII	CACNNNGTG	1 cut(s)	1148
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
EciI	GGCGGA	1 cut(s)	27
Eco130I	CCWWGG	3 cut(s)	334, 884, 1263
Eco47I	GGWCC	1 cut(s)	1126
EcoT14I	CCWWGG	3 cut(s)	334, 884, 1263
EgeI	GGCGCC	1 cut(s)	616
EheI	GGCGCC	1 cut(s)	616
ErhI	CCWWGG	3 cut(s)	334, 884, 1263
FaeI	CATG	4 cut(s)	447, 571, 888, 1275
FaiI	YATR	8 cut(s)	192, 355, 445, 493, 569, 701, 886, 1273
FaqI	GGGAC	1 cut(s)	662
FatI	CATG	4 cut(s)	443, 567, 884, 1271
FbaI	TGATCA	1 cut(s)	829
Fnu4HI	GCNGC	9 cut(s)	96, 115, 432, 435, 521, 565, 737, 917, 1185
FokI	GGATG	1 cut(s)	901
Fsp4HI	GCNGC	9 cut(s)	96, 115, 432, 435, 521, 565, 737, 917, 1185
FspBI	CTAG	5 cut(s)	23, 335, 467, 608, 1133
GlaI	GCGC	2 cut(s)	597, 616
GluI	GCNGC	9 cut(s)	96, 115, 432, 435, 521, 565, 737, 917, 1185
HaeII	RGCGCY	2 cut(s)	599, 618
HaeIII	GGCC	2 cut(s)	448, 950
HapII	CCGG	1 cut(s)	222
HgaI	GACGC	1 cut(s)	449
HhaI	GCGC	2 cut(s)	598, 617
Hin1I	GRCGYC	1 cut(s)	615
Hin1II	CATG	4 cut(s)	447, 571, 888, 1275
Hin6I	GCGC	2 cut(s)	596, 615
HinP1I	GCGC	2 cut(s)	596, 615
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HinfI	GANTC	9 cut(s)	9, 68, 350, 456, 769, 800, 1040, 1154, 1211
HpaI	GTTAAC	1 cut(s)	405
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	2 cut(s)	55, 1160
Hpy166II	GTNNAC	4 cut(s)	405, 1126, 1142, 1163
Hpy188I	TCNGA	4 cut(s)	137, 154, 834, 1200
Hpy188III	TCNNGA	5 cut(s)	382, 533, 797, 1208, 1272
Hpy8I	GTNNAC	4 cut(s)	405, 1126, 1142, 1163
HpyAV	CCTTC	3 cut(s)	66, 803, 1051
HpyCH4III	ACNGT	2 cut(s)	646, 839
HpyCH4IV	ACGT	2 cut(s)	311, 578
HpyF10VI	GCNNNNNNNGC	6 cut(s)	440, 520, 604, 623, 889, 995
HpyF3I	CTNAG	5 cut(s)	397, 603, 732, 872, 1018
HpySE526I	ACGT	2 cut(s)	311, 578
Hsp92I	GRCGYC	1 cut(s)	615
Hsp92II	CATG	4 cut(s)	447, 571, 888, 1275
HspAI	GCGC	2 cut(s)	596, 615
KasI	GGCGCC	1 cut(s)	614
Ksp22I	TGATCA	1 cut(s)	829
KspAI	GTTAAC	1 cut(s)	405
Kzo9I	GATC	4 cut(s)	154, 829, 855, 1243
LmnI	GCTCC	3 cut(s)	122, 528, 710
Lsp1109I	GCAGC	7 cut(s)	421, 443, 532, 551, 748, 903, 1196
LweI	GCATC	2 cut(s)	879, 982
MaeI	CTAG	5 cut(s)	23, 335, 467, 608, 1133
MaeII	ACGT	2 cut(s)	311, 578
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	4 cut(s)	156, 831, 857, 1245
MbiI	CCGCTC	1 cut(s)	117
MboI	GATC	4 cut(s)	154, 829, 855, 1243
MboII	GAAGA	5 cut(s)	162, 275, 451, 799, 1163
MflI	RGATCY	1 cut(s)	1243
MhlI	GDGCHC	1 cut(s)	1144
Mly113I	GGCGCC	1 cut(s)	615
MlyI	GAGTC	1 cut(s)	1205
MmeI	TCCRAC	5 cut(s)	111, 433, 550, 752, 934
MnlI	CCTC	7 cut(s)	45, 495, 539, 540, 878, 881, 1025
MseI	TTAA	6 cut(s)	177, 404, 927, 993, 1008, 1193
MspA1I	CMGCKG	2 cut(s)	434, 739
MspI	CCGG	1 cut(s)	222
Mva1269I	GAATGC	1 cut(s)	98
MwoI	GCNNNNNNNGC	6 cut(s)	440, 520, 604, 623, 889, 995
NarI	GGCGCC	1 cut(s)	615
NcoI	CCATGG	1 cut(s)	884
NdeII	GATC	4 cut(s)	154, 829, 855, 1243
NheI	GCTAGC	1 cut(s)	607
NlaIII	CATG	4 cut(s)	447, 571, 888, 1275
NlaIV	GGNNCC	2 cut(s)	616, 949
NmuCI	GTSAC	1 cut(s)	307
NspI	RCATGY	1 cut(s)	571
NspV	TTCGAA	1 cut(s)	807
PaeI	GCATGC	1 cut(s)	571
PagI	TCATGA	1 cut(s)	1271
PctI	GAATGC	1 cut(s)	98
PfeI	GAWTC	8 cut(s)	9, 68, 350, 456, 769, 800, 1040, 1154
PkrI	GCNGC	9 cut(s)	97, 116, 433, 436, 522, 566, 738, 918, 1186
PleI	GAGTC	1 cut(s)	1205
PluTI	GGCGCC	1 cut(s)	618
PpsI	GAGTC	1 cut(s)	1205
PspN4I	GGNNCC	2 cut(s)	616, 949
PspPI	GGNCC	2 cut(s)	948, 1126
PstI	CTGCAG	2 cut(s)	439, 522
PsuI	RGATCY	1 cut(s)	1243
PvuII	CAGCTG	2 cut(s)	434, 739
RsaI	GTAC	1 cut(s)	966
RsaNI	GTAC	1 cut(s)	965
SaqAI	TTAA	6 cut(s)	177, 404, 927, 993, 1008, 1193
SatI	GCNGC	9 cut(s)	96, 115, 432, 435, 521, 565, 737, 917, 1185
Sau3AI	GATC	4 cut(s)	154, 829, 855, 1243
Sau96I	GGNCC	2 cut(s)	948, 1126
ScaI	AGTACT	1 cut(s)	966
SchI	GAGTC	1 cut(s)	1205
SduI	GDGCHC	1 cut(s)	1144
SfaNI	GCATC	2 cut(s)	879, 982
SfcI	CTRYAG	2 cut(s)	435, 518
SfoI	GGCGCC	1 cut(s)	616
SfuI	TTCGAA	1 cut(s)	807
SinI	GGWCC	1 cut(s)	1126
SmiI	ATTTAAAT	1 cut(s)	1194
SmlI	CTYRAG	2 cut(s)	230, 531
SmoI	CTYRAG	2 cut(s)	230, 531
SphI	GCATGC	1 cut(s)	571
SsiI	CCGC	4 cut(s)	5, 38, 96, 115
SspDI	GGCGCC	1 cut(s)	614
SspI	AATATT	2 cut(s)	510, 558
SspMI	CTAG	5 cut(s)	23, 335, 467, 608, 1133
StyI	CCWWGG	3 cut(s)	334, 884, 1263
SwaI	ATTTAAAT	1 cut(s)	1194
TaaI	ACNGT	2 cut(s)	646, 839
TaiI	ACGT	2 cut(s)	314, 581
TaqI	TCGA	3 cut(s)	500, 796, 807
TatI	WGTACW	1 cut(s)	964
TauI	GCSGC	2 cut(s)	98, 117
TfiI	GAWTC	8 cut(s)	9, 68, 350, 456, 769, 800, 1040, 1154
Tru1I	TTAA	6 cut(s)	177, 404, 927, 993, 1008, 1193
Tru9I	TTAA	6 cut(s)	177, 404, 927, 993, 1008, 1193
TscAI	CASTG	4 cut(s)	421, 865, 918, 1107
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	7 cut(s)	431, 434, 520, 564, 736, 916, 1184
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	3 cut(s)	342, 688, 1167
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	4 cut(s)	421, 865, 918, 1107
VneI	GTGCAC	1 cut(s)	1140
VpaK11BI	GGWCC	1 cut(s)	1126
XapI	RAATTY	5 cut(s)	262, 368, 536, 666, 695
XceI	RCATGY	1 cut(s)	571
XmaJI	CCTAGG	1 cut(s)	334
XspI	CTAG	5 cut(s)	23, 335, 467, 608, 1133
ZrmI	AGTACT	1 cut(s)	966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.