Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003648

Physical Location & Seq

Genomic Coordinates Forward (+)

6093406 .. 6096273

Gene Structure 2868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCCAACTACGTTATCAAGTGGAGTGGCACTTACTCAGTTAGCTGGGGCCAATACTGCTCTTGCTCTTGCAATGACAGTCATCTCTAATCTGTTGGGAATCTTGATTGTCCCATTTTCTATATCAAAATTCATTGCTGACGGAGTTGGTGTATCTGTTCCAACTAAGCAGATTTTTCGAGAATCTTTCAGAGGTGTCGCGGACTTTGTTGATCAGAACCGTAAAAATCTTTCCAAGATCAGTGCAATTCTCCTCAGTTTAGTCGTCGGCATCAAACAACCTAAACAAAGACTAGTTTTGGAATCAGAAGCAGCGTTGGCCACTTGTTTTCTGCTGGGTCCGGCAATGGCGTCAAGGACCAGCCTTGAACAGGTGCAGATTGTGCACCGCCACAGGGCCTATCATATGAGAATTGGCCTTGGCTCGGGCCACCAAGAGTTGATAATAAGCTCACATAATTTGTCAATAAACAACGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF_like

Protein Analysis

160

Amino Acids

17.03

Weight (kDa)

10.12

Isoelectric Point (pI)

29.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF_like	PF13593	1 - 59	2e-09	SBF-like CPA transporter family (DUF4137)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56160 AT3G56160 AT3G56160 AT3G56160 AT3G56160
fragaria_vesca	FvH4_7g05590 FvH4_7g05870
malus_domestica	MD02G1255900.v1.1 MD02G1256100.v1.1 MD02G1256200.v1.1
prunus_persica	Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1
pyrus_communis	pycom02g21680
rosa_chinensis	RchiOBHm_Chr1g0332541 RchiOBHm_Chr1g0332551 RchiOBHm_Chr1g0332571
rosa_laevigata	RLG00000029655 RLG00000029664
rosa_multiflora	Rmu_sc0004413.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318140
rosa_rugosa	Rorug01G0101700
rosa_samantha	Rh1AG126400 Rh1BG096200 Rh1CG120300 Rh1DG130500 Rh2AG156400 Rh4CG087600
rosa_wichuraiana	Rw0G002580 Rw1G010190 Rw1G010690 Rw6G006930 Rw6G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	200
AciI	CCGC	2 cut(s)	200, 388
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	350
AfiI	CCNNNNNNNGG	3 cut(s)	370, 394, 424
AgsI	TTSAA	1 cut(s)	368
AhlI	ACTAGT	1 cut(s)	292
AluBI	AGCT	2 cut(s)	44, 450
AluI	AGCT	2 cut(s)	44, 450
Alw21I	GWGCWC	1 cut(s)	387
Alw44I	GTGCAC	1 cut(s)	383
Ama87I	CYCGRG	1 cut(s)	424
AoxI	GGCC	5 cut(s)	48, 318, 396, 415, 427
ApaLI	GTGCAC	1 cut(s)	383
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	128
AspS9I	GGNCC	5 cut(s)	48, 338, 357, 396, 427
AvaI	CYCGRG	1 cut(s)	424
AvaII	GGWCC	2 cut(s)	338, 357
BaeGI	GKGCMC	1 cut(s)	387
BalI	TGGCCA	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	387
BbvI	GCAGC	1 cut(s)	323
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BclI	TGATCA	1 cut(s)	211
BcuI	ACTAGT	1 cut(s)	292
BfaI	CTAG	1 cut(s)	293
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
Bme18I	GGWCC	2 cut(s)	338, 357
BmeT110I	CYCGRG	1 cut(s)	424
BmgT120I	GGNCC	5 cut(s)	48, 338, 357, 396, 427
BmiI	GGNNCC	2 cut(s)	49, 339
BmsI	GCATC	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	418
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bsc4I	CCNNNNNNNGG	3 cut(s)	370, 394, 424
Bse3DI	GCAATG	3 cut(s)	78, 132, 351
BseDI	CCNNGG	1 cut(s)	418
BseLI	CCNNNNNNNGG	3 cut(s)	370, 394, 424
BseMI	GCAATG	3 cut(s)	78, 132, 351
BseMII	CTCAG	2 cut(s)	50, 268
BseRI	GAGGAG	1 cut(s)	242
BseSI	GKGCMC	1 cut(s)	387
BseXI	GCAGC	1 cut(s)	323
BseYI	CCCAGC	2 cut(s)	44, 334
BsgI	GTGCAG	1 cut(s)	395
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	5 cut(s)	50, 320, 398, 417, 429
BsiHKAI	GWGCWC	1 cut(s)	387
BsiHKCI	CYCGRG	1 cut(s)	424
BsiSI	CCGG	1 cut(s)	341
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	3 cut(s)	370, 394, 424
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	5 cut(s)	50, 320, 398, 417, 429
BsoBI	CYCGRG	1 cut(s)	424
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	211, 237
BspACI	CCGC	2 cut(s)	200, 388
BspANI	GGCC	5 cut(s)	50, 320, 398, 417, 429
BspCNI	CTCAG	2 cut(s)	49, 267
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	2 cut(s)	49, 339
BsrDI	GCAATG	3 cut(s)	78, 132, 351
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	2 cut(s)	211, 237
BssNI	GRCGYC	1 cut(s)	350
BssT1I	CCWWGG	1 cut(s)	418
Bst4CI	ACNGT	2 cut(s)	79, 221
BstACI	GRCGYC	1 cut(s)	350
BstAPI	GCANNNNNTGC	1 cut(s)	382
BstDEI	CTNAG	3 cut(s)	36, 165, 254
BstENI	CCTNNNNNAGG	1 cut(s)	368
BstFNI	CGCG	1 cut(s)	200
BstKTI	GATC	2 cut(s)	214, 240
BstMBI	GATC	2 cut(s)	211, 237
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 317, 382
BstSLI	GKGCMC	1 cut(s)	387
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	323
BsuRI	GGCC	5 cut(s)	50, 320, 398, 417, 429
BtsIMutI	CAGTG	1 cut(s)	247
Cfr13I	GGNCC	5 cut(s)	48, 338, 357, 396, 427
CseI	GACGC	1 cut(s)	339
CspCI	CAANNNNNGTGG	2 cut(s)	6, 41
CviJI	RGCY	9 cut(s)	44, 50, 320, 363, 398, 417, 423, 429, 450
CviKI_1	RGCY	9 cut(s)	44, 50, 320, 363, 398, 417, 423, 429, 450
DdeI	CTNAG	3 cut(s)	36, 165, 254
DpnI	GATC	2 cut(s)	213, 239
DpnII	GATC	2 cut(s)	211, 237
EaeI	YGGCCR	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	418
Eco47I	GGWCC	2 cut(s)	338, 357
Eco88I	CYCGRG	1 cut(s)	424
EcoNI	CCTNNNNNAGG	1 cut(s)	368
EcoO109I	RGGNCCY	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	418
FaiI	YATR	5 cut(s)	122, 405, 407, 456, 478
FaqI	GGGAC	1 cut(s)	95
FauNDI	CATATG	1 cut(s)	405
FbaI	TGATCA	1 cut(s)	211
Fnu4HI	GCNGC	1 cut(s)	312
Fsp4HI	GCNGC	1 cut(s)	312
FspBI	CTAG	1 cut(s)	293
GluI	GCNGC	1 cut(s)	312
GsaI	CCCAGC	2 cut(s)	48, 338
HaeIII	GGCC	5 cut(s)	50, 320, 398, 417, 429
HapII	CCGG	1 cut(s)	341
HgaI	GACGC	1 cut(s)	339
Hin1I	GRCGYC	1 cut(s)	350
HinfI	GANTC	3 cut(s)	99, 182, 302
HpaII	CCGG	1 cut(s)	341
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	3 cut(s)	191, 216, 307
Hpy188III	TCNNGA	2 cut(s)	103, 179
Hpy8I	GTNNAC	1 cut(s)	385
Hpy99I	CGWCG	1 cut(s)	269
HpyCH4III	ACNGT	2 cut(s)	79, 221
HpyCH4IV	ACGT	2 cut(s)	11, 474
HpyCH4V	TGCA	4 cut(s)	71, 245, 376, 385
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 317, 382
HpyF3I	CTNAG	3 cut(s)	36, 165, 254
HpySE526I	ACGT	2 cut(s)	11, 474
Hsp92I	GRCGYC	1 cut(s)	350
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	2 cut(s)	211, 237
LpnPI	CCDG	6 cut(s)	30, 320, 354, 356, 373, 379
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	1 cut(s)	279
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	2 cut(s)	11, 474
MalI	GATC	2 cut(s)	213, 239
MboI	GATC	2 cut(s)	211, 237
MhlI	GDGCHC	1 cut(s)	387
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	4 cut(s)	128, 246, 411, 457
MluNI	TGGCCA	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	2 cut(s)	185, 263
Mox20I	TGGCCA	1 cut(s)	320
MscI	TGGCCA	1 cut(s)	320
Msp20I	TGGCCA	1 cut(s)	320
MspI	CCGG	1 cut(s)	341
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	3 cut(s)	56, 317, 382
NdeI	CATATG	1 cut(s)	405
NdeII	GATC	2 cut(s)	211, 237
NlaIV	GGNNCC	2 cut(s)	49, 339
PfeI	GAWTC	3 cut(s)	99, 182, 302
PkrI	GCNGC	1 cut(s)	313
PspFI	CCCAGC	2 cut(s)	44, 334
PspN4I	GGNNCC	2 cut(s)	49, 339
PspPI	GGNCC	5 cut(s)	48, 338, 357, 396, 427
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	2 cut(s)	211, 237
Sau96I	GGNCC	5 cut(s)	48, 338, 357, 396, 427
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	7 cut(s)	14, 46, 196, 283, 375, 452, 477
SfaNI	GCATC	1 cut(s)	279
SinI	GGWCC	2 cut(s)	338, 357
SpeI	ACTAGT	1 cut(s)	292
Sse9I	AATT	4 cut(s)	128, 246, 411, 457
SsiI	CCGC	2 cut(s)	200, 388
SspMI	CTAG	1 cut(s)	293
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	2 cut(s)	79, 221
TaiI	ACGT	2 cut(s)	14, 477
TaqI	TCGA	1 cut(s)	178
TasI	AATT	4 cut(s)	128, 246, 411, 457
TfiI	GAWTC	3 cut(s)	99, 182, 302
TscAI	CASTG	1 cut(s)	247
TseI	GCWGC	1 cut(s)	311
TspDTI	ATGAA	1 cut(s)	121
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	247
VneI	GTGCAC	1 cut(s)	383
VpaK11BI	GGWCC	2 cut(s)	338, 357
XagI	CCTNNNNNAGG	1 cut(s)	368
XapI	RAATTY	1 cut(s)	128
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.