Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003648

Physical Location & Seq

Genomic Coordinates Reverse (-)

25997058 .. 26006484

Gene Structure 9427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG120300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGCGTTTTTGTTATGGACAAAATGTTTGTGGATTACTATGTGCAGCTCTTGTTGGTGGAGTGACGTTAGGGTTTGCGTATCCAAGCCTAGGTTGTCTTGCTGATTCATACTCTTTGTCAAAATTTTCCACATTCGGGATTTTTATCATCTCAGGATTAACCTTGCACACTGGCGAAATTATTGCAGCTGCAGACGCATGGCCTGTTGGAATCTTCGGGCTAGTCTCCATTTTATTATTTACTCCATATTTTTCGAGGGTAATATTGCAACTGCAGCTCCAACCTCAAGAATTTGTTAGAGGGCTTGCAATATTTTGCTGCATGCCAACTACGTTATCAAGTGGAGTGGCGCTTACCCAGCTAGCTGGGGCCAATTCTGCTCTTGCTCTCGCAATGACTGTCATCTCTAATCTGTTGGGAATTTTGATTGTCCCATTTTCTGTATCAAAATTCATAGCTGATGGAGCTGGTTTATCTGTTCCAACTAAGCAGCTGTTCAAAAGTCTTTTTCTCACATTATTGATCCCCCTAATCTTGGGGAAGATTTTTCGAGAATCTTTCGAAGGTGTTGCAGACTTCGTTGATCAGAACCGTAAAAAACTTTCCAAGATCAGTGCAATCCTCCTCAGTTTAGTGCCATGGATGCAAGTTAGCAGGTCAAGGTCACTGCTGCTGATGGTTAAGCCTGCAGTTTTTCTTGGGGCCGTTGGAATGGGAGTACTACTGCATCTCATCTTGTTAGCCTTTAATGCTGTTGCTGTTAAGAGCCTCTCAGCTCTTTCTGGTGGTAGTCAATCTGTTTTTTCCAAGAAGGAAAATGCAAATGCTGTTCTCCTCGTTGCAAGCCAGAAAACACTGCCTGTAATGGTGGCTGTGGTGGACCAACTAGGTGGTGCACTTGGTGAATCTGGTTTACTTGTTCTTCCTTGTGTTGCAGCACATTTAAATCAGATTATTCTGGACTCTATTCTTGTAAATTACTGGCTTCGCAAAGATCTCCCAACCAACAATGCCAAGATCAAAGTCGGTGTGCTTCTCCAAAGTATGAGAATACTCGGCATCTCGTACCTTTTTAACAAGAGAAAAGTTTACAAGAATCATCAAATGAAGCAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF_like

Protein Analysis

372

Amino Acids

39.85

Weight (kDa)

9.71

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF_like	PF13593	15 - 328	1.8e-45	SBF-like CPA transporter family (DUF4137)
SBF	PF01758	71 - 214	4.3e-14	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56160 AT3G56160 AT3G56160 AT3G56160 AT3G56160
fragaria_vesca	FvH4_7g05590 FvH4_7g05870
malus_domestica	MD02G1255900.v1.1 MD02G1256100.v1.1 MD02G1256200.v1.1
prunus_persica	Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1
pyrus_communis	pycom02g21680
rosa_chinensis	RchiOBHm_Chr1g0332541 RchiOBHm_Chr1g0332551 RchiOBHm_Chr1g0332571
rosa_laevigata	RLG00000029655 RLG00000029664
rosa_multiflora	Rmu_sc0004413.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318140
rosa_rugosa	Rorug01G0101700
rosa_samantha	Rh1AG126400 Rh1BG096200 Rh1CG120300 Rh1DG130500 Rh2AG156400 Rh4CG087600
rosa_wichuraiana	Rw0G002580 Rw1G010190 Rw1G010690 Rw6G006930 Rw6G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	645
AclWI	GGATC	1 cut(s)	517
AcsI	RAATTY	4 cut(s)	122, 290, 420, 449
AdeI	CACNNNGTG	1 cut(s)	902
AfaI	GTAC	2 cut(s)	720, 1067
AfiI	CCNNNNNNNGG	3 cut(s)	89, 135, 535
AgsI	TTSAA	1 cut(s)	499
AluBI	AGCT	9 cut(s)	47, 188, 277, 361, 365, 458, 467, 493, 776
AluI	AGCT	9 cut(s)	47, 188, 277, 361, 365, 458, 467, 493, 776
Alw21I	GWGCWC	1 cut(s)	898
Alw26I	GTCTC	1 cut(s)	229
Alw44I	GTGCAC	1 cut(s)	894
AlwI	GGATC	1 cut(s)	517
AoxI	GGCC	3 cut(s)	200, 369, 702
ApaLI	GTGCAC	1 cut(s)	894
ApeKI	GCWGC	8 cut(s)	44, 185, 188, 274, 318, 490, 670, 935
ApoI	RAATTY	4 cut(s)	122, 290, 420, 449
ArsI	GACNNNNNNTTYG	2 cut(s)	9, 41
AspA2I	CCTAGG	1 cut(s)	88
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	3 cut(s)	369, 702, 880
AsuHPI	GGTGA	1 cut(s)	914
AsuII	TTCGAA	1 cut(s)	561
AsuNHI	GCTAGC	1 cut(s)	361
AvaII	GGWCC	1 cut(s)	880
AvrII	CCTAGG	1 cut(s)	88
BaeGI	GKGCMC	1 cut(s)	898
Bbv12I	GWGCWC	1 cut(s)	898
BbvI	GCAGC	8 cut(s)	56, 175, 197, 286, 305, 502, 657, 947
BccI	CCATC	2 cut(s)	455, 670
BceAI	ACGGC	1 cut(s)	689
BcgI	CGANNNNNNTGC	4 cut(s)	164, 198, 551, 585
BciVI	GTATCC	1 cut(s)	90
BclI	TGATCA	1 cut(s)	583
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	4 cut(s)	89, 221, 362, 887
BfmI	CTRYAG	3 cut(s)	189, 272, 687
BfoI	RGCGCY	1 cut(s)	353
BfuAI	ACCTGC	1 cut(s)	645
BfuI	GTATCC	1 cut(s)	90
BglII	AGATCT	1 cut(s)	994
BisI	GCNGC	8 cut(s)	45, 186, 189, 275, 319, 491, 671, 936
BlnI	CCTAGG	1 cut(s)	88
BlsI	GCNGC	8 cut(s)	46, 187, 190, 276, 320, 492, 672, 937
BmcAI	AGTACT	1 cut(s)	720
Bme18I	GGWCC	1 cut(s)	880
BmgT120I	GGNCC	3 cut(s)	369, 702, 880
BmiI	GGNNCC	2 cut(s)	370, 703
BmsI	GCATC	3 cut(s)	633, 736, 1068
BmtI	GCTAGC	1 cut(s)	365
Bpu14I	TTCGAA	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	270
BsaBI	GATNNNNATC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	88, 638
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 135, 535
Bse1I	ACTGG	2 cut(s)	175, 986
Bse3DI	GCAATG	1 cut(s)	399
Bse8I	GATNNNNATC	1 cut(s)	143
BseDI	CCNNGG	2 cut(s)	88, 638
BseGI	GGATG	1 cut(s)	648
BseJI	GATNNNNATC	1 cut(s)	143
BseLI	CCNNNNNNNGG	3 cut(s)	89, 135, 535
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	3 cut(s)	165, 640, 786
BseNI	ACTGG	2 cut(s)	175, 986
BseRI	GAGGAG	2 cut(s)	614, 824
BseSI	GKGCMC	1 cut(s)	898
BseXI	GCAGC	8 cut(s)	56, 175, 197, 286, 305, 502, 657, 947
BseYI	CCCAGC	2 cut(s)	357, 365
BsgI	GTGCAG	1 cut(s)	63
BshFI	GGCC	3 cut(s)	202, 371, 704
BsiHKAI	GWGCWC	1 cut(s)	898
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	3 cut(s)	89, 135, 535
BsmAI	GTCTC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	3 cut(s)	202, 371, 704
Bsp119I	TTCGAA	1 cut(s)	561
Bsp1286I	GDGCHC	1 cut(s)	898
Bsp143I	GATC	5 cut(s)	522, 583, 609, 994, 1017
Bsp19I	CCATGG	1 cut(s)	638
BspANI	GGCC	3 cut(s)	202, 371, 704
BspCNI	CTCAG	3 cut(s)	164, 639, 785
BspLI	GGNNCC	2 cut(s)	370, 703
BspMAI	CTGCAG	3 cut(s)	193, 276, 691
BspMI	ACCTGC	1 cut(s)	645
BspOI	GCTAGC	1 cut(s)	365
BspPI	GGATC	1 cut(s)	517
BspT104I	TTCGAA	1 cut(s)	561
BsrDI	GCAATG	1 cut(s)	399
BsrI	ACTGG	2 cut(s)	175, 986
BssECI	CCNNGG	2 cut(s)	88, 638
BssMI	GATC	5 cut(s)	522, 583, 609, 994, 1017
BssT1I	CCWWGG	2 cut(s)	88, 638
Bst4CI	ACNGT	2 cut(s)	400, 593
BstBI	TTCGAA	1 cut(s)	561
BstC8I	GCNNGC	5 cut(s)	306, 323, 363, 687, 844
BstDEI	CTNAG	4 cut(s)	151, 486, 626, 772
BstDSI	CCRYGG	1 cut(s)	638
BstF5I	GGATG	1 cut(s)	648
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	5 cut(s)	525, 586, 612, 997, 1020
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	5 cut(s)	522, 583, 609, 994, 1017
BstMWI	GCNNNNNNNGC	7 cut(s)	194, 274, 358, 377, 464, 643, 749
BstNSI	RCATGY	1 cut(s)	325
BstSFI	CTRYAG	3 cut(s)	189, 272, 687
BstSLI	GKGCMC	1 cut(s)	898
BstV1I	GCAGC	8 cut(s)	56, 175, 197, 286, 305, 502, 657, 947
BstX2I	RGATCY	1 cut(s)	994
BstXI	CCANNNNNNTGG	2 cut(s)	365, 890
BstYI	RGATCY	1 cut(s)	994
BsuI	GTATCC	1 cut(s)	90
BsuRI	GGCC	3 cut(s)	202, 371, 704
BtgI	CCRYGG	1 cut(s)	638
BtsCI	GGATG	1 cut(s)	648
BtsI	GCAGTG	2 cut(s)	665, 854
BtsIMutI	CAGTG	4 cut(s)	168, 619, 665, 854
BveI	ACCTGC	1 cut(s)	645
Cac8I	GCNNGC	5 cut(s)	306, 323, 363, 687, 844
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	3 cut(s)	369, 702, 880
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	2 cut(s)	719, 1066
CspCI	CAANNNNNGTGG	2 cut(s)	327, 362
CviAII	CATG	4 cut(s)	198, 322, 639, 1116
CviQI	GTAC	2 cut(s)	719, 1066
DdeI	CTNAG	4 cut(s)	151, 486, 626, 772
DpnI	GATC	5 cut(s)	524, 585, 611, 996, 1019
DpnII	GATC	5 cut(s)	522, 583, 609, 994, 1017
DraI	TTTAAA	1 cut(s)	945
DraIII	CACNNNGTG	1 cut(s)	902
Eco130I	CCWWGG	2 cut(s)	88, 638
Eco47I	GGWCC	1 cut(s)	880
EcoT14I	CCWWGG	2 cut(s)	88, 638
ErhI	CCWWGG	2 cut(s)	88, 638
FaeI	CATG	4 cut(s)	201, 325, 642, 1119
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	4 cut(s)	197, 321, 638, 1115
FbaI	TGATCA	1 cut(s)	583
Fnu4HI	GCNGC	8 cut(s)	45, 186, 189, 275, 319, 491, 671, 936
FokI	GGATG	1 cut(s)	655
Fsp4HI	GCNGC	8 cut(s)	45, 186, 189, 275, 319, 491, 671, 936
FspBI	CTAG	4 cut(s)	89, 221, 362, 887
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	8 cut(s)	45, 186, 189, 275, 319, 491, 671, 936
GsaI	CCCAGC	2 cut(s)	361, 369
HaeII	RGCGCY	1 cut(s)	353
HaeIII	GGCC	3 cut(s)	202, 371, 704
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	4 cut(s)	201, 325, 642, 1119
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HinfI	GANTC	6 cut(s)	104, 210, 554, 905, 962, 1096
HphI	GGTGA	1 cut(s)	914
Hpy166II	GTNNAC	4 cut(s)	880, 896, 914, 1090
Hpy188I	TCNGA	2 cut(s)	588, 951
Hpy188III	TCNNGA	5 cut(s)	136, 153, 287, 551, 959
Hpy8I	GTNNAC	4 cut(s)	880, 896, 914, 1090
HpyAV	CCTTC	2 cut(s)	557, 805
HpyCH4III	ACNGT	2 cut(s)	400, 593
HpyCH4IV	ACGT	2 cut(s)	65, 332
HpyF10VI	GCNNNNNNNGC	7 cut(s)	194, 274, 358, 377, 464, 643, 749
HpyF3I	CTNAG	4 cut(s)	151, 486, 626, 772
HpySE526I	ACGT	2 cut(s)	65, 332
Hsp92II	CATG	4 cut(s)	201, 325, 642, 1119
HspAI	GCGC	1 cut(s)	350
Ksp22I	TGATCA	1 cut(s)	583
Kzo9I	GATC	5 cut(s)	522, 583, 609, 994, 1017
LmnI	GCTCC	2 cut(s)	282, 464
Lsp1109I	GCAGC	8 cut(s)	56, 175, 197, 286, 305, 502, 657, 947
LweI	GCATC	3 cut(s)	633, 736, 1068
MaeI	CTAG	4 cut(s)	89, 221, 362, 887
MaeII	ACGT	2 cut(s)	65, 332
MaeIII	GTNAC	2 cut(s)	61, 663
MalI	GATC	5 cut(s)	524, 585, 611, 996, 1019
MboI	GATC	5 cut(s)	522, 583, 609, 994, 1017
MboII	GAAGA	3 cut(s)	205, 553, 914
MflI	RGATCY	1 cut(s)	994
MhlI	GDGCHC	1 cut(s)	898
MluCI	AATT	7 cut(s)	122, 177, 290, 373, 420, 449, 976
MlyI	GAGTC	1 cut(s)	956
MmeI	TCCRAC	4 cut(s)	187, 304, 506, 688
MnlI	CCTC	7 cut(s)	249, 293, 294, 632, 635, 779, 845
MseI	TTAA	6 cut(s)	158, 681, 747, 762, 944, 1074
MspA1I	CMGCKG	2 cut(s)	188, 493
MwoI	GCNNNNNNNGC	7 cut(s)	194, 274, 358, 377, 464, 643, 749
NcoI	CCATGG	1 cut(s)	638
NdeII	GATC	5 cut(s)	522, 583, 609, 994, 1017
NheI	GCTAGC	1 cut(s)	361
NlaIII	CATG	4 cut(s)	201, 325, 642, 1119
NlaIV	GGNNCC	2 cut(s)	370, 703
NmeAIII	GCCGAG	1 cut(s)	1035
NmuCI	GTSAC	2 cut(s)	61, 663
NspI	RCATGY	1 cut(s)	325
NspV	TTCGAA	1 cut(s)	561
PaeI	GCATGC	1 cut(s)	325
PfeI	GAWTC	5 cut(s)	104, 210, 554, 905, 1096
PkrI	GCNGC	8 cut(s)	46, 187, 190, 276, 320, 492, 672, 937
PleI	GAGTC	1 cut(s)	956
PpsI	GAGTC	1 cut(s)	956
PspFI	CCCAGC	2 cut(s)	357, 365
PspN4I	GGNNCC	2 cut(s)	370, 703
PspPI	GGNCC	3 cut(s)	369, 702, 880
PstI	CTGCAG	3 cut(s)	193, 276, 691
PsuI	RGATCY	1 cut(s)	994
PvuII	CAGCTG	2 cut(s)	188, 493
RsaI	GTAC	2 cut(s)	720, 1067
RsaNI	GTAC	2 cut(s)	719, 1066
SaqAI	TTAA	6 cut(s)	158, 681, 747, 762, 944, 1074
SatI	GCNGC	8 cut(s)	45, 186, 189, 275, 319, 491, 671, 936
Sau3AI	GATC	5 cut(s)	522, 583, 609, 994, 1017
Sau96I	GGNCC	3 cut(s)	369, 702, 880
ScaI	AGTACT	1 cut(s)	720
SchI	GAGTC	1 cut(s)	956
SduI	GDGCHC	1 cut(s)	898
SfaNI	GCATC	3 cut(s)	633, 736, 1068
SfcI	CTRYAG	3 cut(s)	189, 272, 687
SfuI	TTCGAA	1 cut(s)	561
SinI	GGWCC	1 cut(s)	880
SmiI	ATTTAAAT	1 cut(s)	945
SmlI	CTYRAG	1 cut(s)	285
SmoI	CTYRAG	1 cut(s)	285
SphI	GCATGC	1 cut(s)	325
Sse9I	AATT	7 cut(s)	122, 177, 290, 373, 420, 449, 976
SspI	AATATT	2 cut(s)	264, 312
SspMI	CTAG	4 cut(s)	89, 221, 362, 887
StyI	CCWWGG	2 cut(s)	88, 638
SwaI	ATTTAAAT	1 cut(s)	945
TaaI	ACNGT	2 cut(s)	400, 593
TaiI	ACGT	2 cut(s)	68, 335
TaqI	TCGA	3 cut(s)	254, 550, 561
TasI	AATT	7 cut(s)	122, 177, 290, 373, 420, 449, 976
TatI	WGTACW	1 cut(s)	718
TfiI	GAWTC	5 cut(s)	104, 210, 554, 905, 1096
Tru1I	TTAA	6 cut(s)	158, 681, 747, 762, 944, 1074
Tru9I	TTAA	6 cut(s)	158, 681, 747, 762, 944, 1074
TscAI	CASTG	4 cut(s)	175, 619, 672, 861
TseFI	GTSAC	2 cut(s)	61, 663
TseI	GCWGC	8 cut(s)	44, 185, 188, 274, 318, 490, 670, 935
Tsp45I	GTSAC	2 cut(s)	61, 663
TspDTI	ATGAA	2 cut(s)	96, 442
TspRI	CASTG	4 cut(s)	175, 619, 672, 861
VneI	GTGCAC	1 cut(s)	894
VpaK11BI	GGWCC	1 cut(s)	880
XapI	RAATTY	4 cut(s)	122, 290, 420, 449
XceI	RCATGY	1 cut(s)	325
XmaJI	CCTAGG	1 cut(s)	88
XspI	CTAG	4 cut(s)	89, 221, 362, 887
ZrmI	AGTACT	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.