Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003648

Physical Location & Seq

Genomic Coordinates Reverse (-)

15784125 .. 15787598

Gene Structure 3474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG087600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAAGTCGATACCGAAGGAAAGTGGTTCATTTGACCAACTTGGAAGCTCCACCAGAGGGCTTGCAATATTTTGCTGCATGCCAACTACGTTATCAAGTGGAGTGGCTCTTACTCGGCTAGCTGGGGCCAATTCTGCTCTTGCTCTCGCAATGACTGTCATCTCTAATCTGTTGGGAATTTTGATTGTCCCATTTTCTGTATCAAAATTCATAGCTGATGGAGCTGGTTTATCTGTTCCAACTAAGCAGCTGTTCAAAAGTCTTTTTCTCACATTATTGATCCCCCTAATCTTAGGGAAGATTTGTAAGTCTTCAATATTTTTCTGCTTTAAGAATCAAAGCCATACAACAGGTGGACTGCCGACTTTTATTGATGTTGGGAATAGCTTTGGTGCTCTAGCAATTGTTGAAGATAATTTGTTACATCAGTTCCATAGCCTTGCCTTTCTATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBF_like

Protein Analysis

151

Amino Acids

15.9

Weight (kDa)

9.07

Isoelectric Point (pI)

24.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBF_like	PF13593	20 - 111	1.9e-21	SBF-like CPA transporter family (DUF4137)
SBF	PF01758	20 - 112	1.1e-12	Sodium Bile acid symporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56160 AT3G56160 AT3G56160 AT3G56160 AT3G56160
fragaria_vesca	FvH4_7g05590 FvH4_7g05870
malus_domestica	MD02G1255900.v1.1 MD02G1256100.v1.1 MD02G1256200.v1.1
prunus_persica	Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1 Prupe.2G079400_v2.0.a1
pyrus_communis	pycom02g21680
rosa_chinensis	RchiOBHm_Chr1g0332541 RchiOBHm_Chr1g0332551 RchiOBHm_Chr1g0332571
rosa_laevigata	RLG00000029655 RLG00000029664
rosa_multiflora	Rmu_sc0004413.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318140
rosa_rugosa	Rorug01G0101700
rosa_samantha	Rh1AG126400 Rh1BG096200 Rh1CG120300 Rh1DG130500 Rh2AG156400 Rh4CG087600
rosa_wichuraiana	Rw0G002580 Rw1G010190 Rw1G010690 Rw6G006930 Rw6G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	274
AcsI	RAATTY	2 cut(s)	177, 206
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgsI	TTSAA	3 cut(s)	256, 315, 410
AluBI	AGCT	6 cut(s)	48, 122, 215, 224, 250, 387
AluI	AGCT	6 cut(s)	48, 122, 215, 224, 250, 387
Alw21I	GWGCWC	1 cut(s)	397
AlwI	GGATC	1 cut(s)	274
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	2 cut(s)	75, 247
ApoI	RAATTY	2 cut(s)	177, 206
AspS9I	GGNCC	1 cut(s)	126
AsuNHI	GCTAGC	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	2 cut(s)	62, 259
BccI	CCATC	1 cut(s)	212
BfaI	CTAG	2 cut(s)	119, 398
BisI	GCNGC	2 cut(s)	76, 248
BlsI	GCNGC	2 cut(s)	77, 249
BmgT120I	GGNCC	1 cut(s)	126
BmiI	GGNNCC	1 cut(s)	127
BmtI	GCTAGC	1 cut(s)	122
BpiI	GAAGAC	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMI	GCAATG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	62, 259
BseYI	CCCAGC	1 cut(s)	122
BshFI	GGCC	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	397
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	1 cut(s)	279
BspANI	GGCC	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	127
BspOI	GCTAGC	1 cut(s)	122
BspPI	GGATC	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	156
BssMI	GATC	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	157
BstC8I	GCNNGC	3 cut(s)	63, 80, 120
BstDEI	CTNAG	2 cut(s)	243, 292
BstKTI	GATC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	279
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 221
BstNSI	RCATGY	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	62, 259
BstV2I	GAAGAC	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	128
Cac8I	GCNNGC	3 cut(s)	63, 80, 120
Cfr13I	GGNCC	1 cut(s)	126
CspCI	CAANNNNNGTGG	2 cut(s)	84, 119
CviAII	CATG	1 cut(s)	79
DdeI	CTNAG	2 cut(s)	243, 292
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
FaeI	CATG	1 cut(s)	82
FaiI	YATR	5 cut(s)	80, 212, 345, 435, 454
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	1 cut(s)	78
Fnu4HI	GCNGC	2 cut(s)	76, 248
Fsp4HI	GCNGC	2 cut(s)	76, 248
FspBI	CTAG	2 cut(s)	119, 398
GluI	GCNGC	2 cut(s)	76, 248
GsaI	CCCAGC	1 cut(s)	126
HaeIII	GGCC	1 cut(s)	128
Hin1II	CATG	1 cut(s)	82
HinfI	GANTC	1 cut(s)	334
Hpy166II	GTNNAC	1 cut(s)	356
Hpy8I	GTNNAC	1 cut(s)	356
HpyAV	CCTTC	1 cut(s)	10
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	2 cut(s)	65, 78
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 221
HpyF3I	CTNAG	2 cut(s)	243, 292
HpySE526I	ACGT	1 cut(s)	89
Hsp92II	CATG	1 cut(s)	82
Kzo9I	GATC	1 cut(s)	279
LmnI	GCTCC	2 cut(s)	53, 221
LpnPI	CCDG	4 cut(s)	67, 108, 210, 336
Lsp1109I	GCAGC	2 cut(s)	62, 259
MaeI	CTAG	2 cut(s)	119, 398
MaeII	ACGT	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	420
MalI	GATC	1 cut(s)	281
MboI	GATC	1 cut(s)	279
MboII	GAAGA	3 cut(s)	303, 310, 422
MfeI	CAATTG	1 cut(s)	402
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	5 cut(s)	130, 177, 206, 402, 415
MmeI	TCCRAC	1 cut(s)	263
MnlI	CCTC	1 cut(s)	50
MseI	TTAA	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	250
MunI	CAATTG	1 cut(s)	402
MwoI	GCNNNNNNNGC	2 cut(s)	134, 221
NdeII	GATC	1 cut(s)	279
NheI	GCTAGC	1 cut(s)	118
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	1 cut(s)	127
NmeAIII	GCCGAG	1 cut(s)	94
NspI	RCATGY	1 cut(s)	82
PaeI	GCATGC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	2 cut(s)	77, 249
PspFI	CCCAGC	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	126
PvuII	CAGCTG	1 cut(s)	250
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	2 cut(s)	76, 248
Sau3AI	GATC	1 cut(s)	279
Sau96I	GGNCC	1 cut(s)	126
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	8 cut(s)	50, 92, 124, 217, 226, 252, 355, 389
SphI	GCATGC	1 cut(s)	82
Sse9I	AATT	5 cut(s)	130, 177, 206, 402, 415
SspI	AATATT	2 cut(s)	69, 318
SspMI	CTAG	2 cut(s)	119, 398
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	1 cut(s)	92
TaqI	TCGA	1 cut(s)	8
TasI	AATT	5 cut(s)	130, 177, 206, 402, 415
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseI	GCWGC	2 cut(s)	75, 247
TspDTI	ATGAA	3 cut(s)	17, 18, 199
XapI	RAATTY	2 cut(s)	177, 206
XceI	RCATGY	1 cut(s)	82
XcmI	CCANNNNNNNNNTGG	1 cut(s)	350
XspI	CTAG	2 cut(s)	119, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.